LOC120566016


Basic Information

Item Value
gene id LOC120566016
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 9493981 ~ 9495357 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU127112
CATTTACTGTTCACTGTGCCACAATCTAATACCTCAACTTGTACCCATATATTTTTTAGAGAGTGTAGGCTGTGGGAGTCCACCACCTCTCACAGATGGAGACATCAAGTACACCATTAAAAGTAATTACAGCCATCAAGAAAGGGTTGATGTCAATGTGTACTACACACACCTGGAGGGTGGGCCTAACAGAACCTGCATCAGCGGTGAATGGACCGGACAGATGAGATGCCTCAAACCCTGTATTGTGAATGAAGACCTCTATAGACAACACAACATTACTATAAAATCTAGTGACAGTACATTTTTCCCTCATGATGAAATAATTGAGTTCAGGTGTGCCAGAGGAGTACCAGTCGGTGCAGTGGCAATGCGTCAGAGGTGTAATGGGGGTGTGATTCTCCTGCCTACCTGCCAGTGAGAGTCATCTGAAAGTAATCTACAGAGCATGCAGACTTATCCTCCACTTTAACTGTGaac
>XR_005640322.1
CTGGAGGGTGGGCCTAACAGAACCTGCATCAGCGGTGAATGGACCGGACAGATGAGATGCCTCAAACCCTGTATTGTGAATGAAGACCTCTATAGACAACACAACATTACTATAAAATCTAGTGACAGTACATTTTTCCCTCATGATGAAATAATTGAGTTCAGGTGTGCCAGAGGAGTACCAGTCGGTGCAGTGGCAATGCGTCAGAGGTGTAATGGGGGTGTGATTCTCCTGCCTACCTGCCAGTGAGAGTCATCTGAAAGTAATCTACAGAGCATGCAGACTTATCCTCCACTTTAACTGTGaacattataataaaacatacttgatctctgtc

Function

GO:

id name namespace
GO:0044421 obsolete extracellular region part cellular_component
GO:0005576 extracellular region cellular_component
GO:0005615 extracellular space cellular_component
GO:0061783 peptidoglycan muralytic activity molecular_function
GO:0003796 lysozyme activity molecular_function

KEGG:

id description
ko00760 Nicotinate and nicotinamide metabolism
ko04610 Complement and coagulation cascades

RNA

RNA id representative length rna type GC content exon number start site end site
TU127112 True 480 lncRNA 0.44 2 9493981 9495328
XR_005640322.1 False 337 lncRNA 0.45 2 9494153 9495357

Neighbor

gene id symbol gene type direction distance location
LOC120566014 NA coding upstream 20607 9462445 ~ 9473374 (+)
LOC120564889 rgs2,LOC103367537 coding upstream 410124 9080859 ~ 9083857 (+)
LOC120566074 LOC104935955,LOC103367504 coding upstream 423305 9067178 ~ 9070676 (+)
LOC120564878 NA coding upstream 431945 9057341 ~ 9062036 (+)
LOC120564973 LOC103367494,LOC104965670,LOC104935957 coding upstream 460301 9021517 ~ 9033680 (+)
trnah-gug_12 NA coding downstream 76941 9572298 ~ 9572369 (+)
depdc1a depdc1 coding downstream 79901 9575258 ~ 9587669 (+)
LOC120566020 LOC103374322,LOC104940880,LOC103131468,LOC106964853 coding downstream 93799 9589156 ~ 9603575 (+)
fnbp1l fnbp1l,LOC102783810 coding downstream 119438 9614795 ~ 9671788 (+)
hps3 hps3 coding downstream 270719 9766076 ~ 9785140 (+)
G94232 NA non-coding upstream 8016 9484003 ~ 9485965 (+)
LOC120566015 NA non-coding upstream 56360 9434721 ~ 9437621 (+)
G94201 NA non-coding upstream 324224 9169319 ~ 9169757 (+)
G94192 uchl5 non-coding upstream 397689 9089828 ~ 9096292 (+)
G94169 NA non-coding upstream 492275 9001456 ~ 9001706 (+)
G94231 NA non-coding downstream 45180 9540537 ~ 9541059 (+)
G94238 NA non-coding downstream 52357 9547714 ~ 9551691 (+)
G94259 NA non-coding downstream 166775 9662132 ~ 9679737 (+)
G94266 bcar3,LOC102779191,LOC102207586,LOC101480816 non-coding downstream 196572 9691929 ~ 9693033 (+)
G94373 NA non-coding downstream 405838 9901195 ~ 9902122 (+)
G94199 LOC103367571,LOC102312400,LOC100710958,LOC101467655 other upstream 325104 9147162 ~ 9168877 (+)
G94073 rgs5,LOC107393027,LOC104951458,LOC100708109,LOC105932873 other upstream 1207545 8237370 ~ 8286436 (+)
LOC120565614 NA other upstream 1588734 7896145 ~ 7905247 (+)
LOC120565294 pycrl other upstream 1603804 7878919 ~ 7890177 (+)
G93938 NA other upstream 2143394 7349810 ~ 7350587 (+)
G94239 NA other downstream 56939 9552296 ~ 9557568 (+)
G94281 NA other downstream 322264 9817621 ~ 9879198 (+)
LOC120565620 NA other downstream 348914 9844271 ~ 9846275 (+)
G94376 NA other downstream 406928 9902285 ~ 9903189 (+)
ttc14 ttc14 other downstream 438256 9933613 ~ 9948237 (+)

Expression


Co-expression Network