LOC120565491


Basic Information

Item Value
gene id LOC120565491
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 10204140 ~ 10297258 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU127376
CGCGGCGAGCAGATTCCTCTGAGCTAGCCATTATCTCAGGGAGGAAGTTAATTAAAGTGGCCCAGTCTGAATCAATGGGGGAATTTGCTGCCGCGCGACGGACAGACCGACGGACTGACAGGAAGAGCGGAGTGACGGCCATGACACCACTTCAGAAGAGAAGATTAGCCCAGAGACAAAACTCTCGGCTCTGATCAGCCCTACAGTGTGGCTCTCCTCCTGGATTACTCCTCTCccacccctccctctcctcctttctttttctatctctccctcgctatccatccatccacgcCTCCCCCATCCTCCATCCCCGAAAGAACTTCAGGGGGCTTGTCTTCAAAGCTCGTCCCCTCCTTCCATCCCTGTAATTC
>XR_005640263.1
TAGAGGCCGGGACTTTAGCCGTGGCCCATGTGAAAATTATAACGAAGCAATATGACAATTAATTGCTTCATTATGGGTAAAGAATTGCATCACTGTACCTTGGCATAGGCTAGGTAAGAAAAACCCGCCTTTATTAATCATTGCACCACCATGGTAGCACGTTTAGGGACGCAATTCAAACACACCTGTTGCTGGCTAACGTTCGGCCTGGCTAACAGGCTAAATGCTCATGGTGGGTCCTCCAACGGTGACTTCTTCGTTCACTGAGGAAGCTTTACCTTTAATGAGGTGTATGTGAGGGCCATCTACTGCCTGTGATAATAATCCCTGGGACAGAGAGACTAAGTGGACTGGTTATATTGGGAATAAACAAGCAGAGAAATGGAACCTGGAGCAGATTGAGGACTTCGCAGGGCTTCGTGCACAGTGACAGGACTCGCAGAAGGCCGCTCCGAAAGGCTACATCTGCAATTTGAGCCACAACAGGGAGATTTTGAGCATGCCAAGCAACTTTCAAGGAAAATGTTCACGTGTCTGATAAACCATTCAGGCCTCCAAGGACGTTTTTCCCATCCAAGCATCCATCCAGTGAAATTACACACTCAACACATAATAGAGTCTGTTCCTATCGTCTCAGCACAGAGAGACCCAGAACCCACATCTGCTCCAGAATACCCCAGACAATAAACAATTCACTCTTCATGTTCAAATCTCATTTTTCGGACAAAGTCttgacaataaaaaagaaataaattacGCCGCCTCTGAAGGGGCCGCCTTAGCCATCCTAAAGACGGAAGGAAAAGTTTTTCTCAGAGTTTTTTCGCGGCGAGCAGATTCCTCTGAGCTAGCCATTATCTCAGGGAGGAAGTTAATTAAAGTGGCCCAGTCTGAATCAATGGGGGAATTTGCTGCCGCGCGACGGACAGACCGACGGACTGACAGGAAGAGCGGAGTGACGGCCATGACACCACTTCAGAAGAGAAGATTAGCCCAGAGACAAAACTCTCGGCTCTGATCAGCCCTACAGTGTGGCTCTCCTCCTGGATTACTCCTCTCccacccctccctctcctcctttctttttctatctctccctcgctatccatccatccacgcCTCCCCCATCCTCCATCCCCGAAAGAACTTCAGGGGGCTTGTCTTCAAAGCTCGTCCCCTCCTTCCATCCCTGTAATTCCTCACATCATTACCAAGTTTCCAAAACTTAATTTTAGCAATTACACatgcaattaattaataaatgtgCTGTCATTACAGCCCCTTGTGTGATCTGAGCCCCATCAATGGGAGGTTGAAATAAAGTGGTCAAATGA

Function

GO: NA

KEGG:

id description
ko03022 Basal transcription factors

RNA

RNA id representative length rna type GC content exon number start site end site
TU127376 False 374 lncRNA 0.55 1 10296749 10297122
XR_005640263.1 True 1334 lncRNA 0.47 3 10204140 10297258

Neighbor

gene id symbol gene type direction distance location
sox2 sox2 coding upstream 88818 10112982 ~ 10115322 (+)
fxr1 fxr1,LOC106531534 coding upstream 224398 9967354 ~ 9979742 (+)
LOC120565621 NA coding upstream 338685 9851125 ~ 9865455 (+)
LOC120565507 NA coding upstream 407151 9785792 ~ 9796989 (+)
hps3 hps3 coding upstream 419000 9766076 ~ 9785140 (+)
kng1 NA coding downstream 143300 10440558 ~ 10450982 (+)
zmat3 zmat3 coding downstream 196271 10493529 ~ 10503066 (+)
LOC120565703 NA coding downstream 246450 10543708 ~ 10553852 (+)
LOC120565623 NA coding downstream 295579 10592837 ~ 10609226 (+)
henmt1 NA coding downstream 320117 10617375 ~ 10627039 (+)
G94405 NA non-coding upstream 20732 10183194 ~ 10183408 (+)
G94400 NA non-coding upstream 220296 9981422 ~ 9983844 (+)
LOC120565916 NA non-coding upstream 292040 9908907 ~ 9912100 (+)
G94373 NA non-coding upstream 302018 9901195 ~ 9902122 (+)
G94266 bcar3,LOC102779191,LOC102207586,LOC101480816 non-coding upstream 511107 9691929 ~ 9693033 (+)
G94426 NA non-coding downstream 41978 10339236 ~ 10405233 (+)
G94427 NA non-coding downstream 48939 10346197 ~ 10358788 (+)
G94450 NA non-coding downstream 210394 10507652 ~ 10509538 (+)
G94515 NA non-coding downstream 233438 10530696 ~ 10531381 (+)
G94587 NA non-coding downstream 413945 10711203 ~ 10711496 (+)
LOC120565490 NA other upstream 44259 9985719 ~ 10159881 (+)
ttc14 ttc14 other upstream 255903 9933613 ~ 9948237 (+)
G94376 NA other upstream 300951 9902285 ~ 9903189 (+)
G94281 NA other upstream 324942 9817621 ~ 9879198 (+)
atp11b atp11b other downstream 66204 10363462 ~ 10414826 (+)
G94598 NA other downstream 619667 10916925 ~ 10941244 (+)
si:ch211-162e15.3 LOC103376230,LOC100712485,LOC108238459,LOC102795316,LOC102207055 other downstream 649674 10946932 ~ 10948316 (+)
LOC120565923 LOC103370579,LOC100695501,LOC102794561,LOC101470646,LOC102226407,LOC102291616 other downstream 1062432 11359690 ~ 11458146 (+)
znhit6 znhit6,LOC102790327 other downstream 1491877 11789135 ~ 11821882 (+)

Expression


Co-expression Network