si:ch211-162e15.3 (LOC103376230,LOC100712485,LOC108238459,LOC102795316,LOC102207055)


Basic Information

Item Value
gene id si:ch211-162e15.3
gene name LOC103376230,LOC100712485,LOC108238459,LOC102795316,LOC102207055
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 10946932 ~ 10948316 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU127615
CGAGTTGTGGATTCGTGCGTCGAGCGAAGGATAATGTTAAGTGGAGACCTAAAGGAATCGCATCTAAACCAACTTCAGCCTCACTCCACAGTATGTTATGTCATGTAATGCAACCTAATGGTCGGTTCAGCTGAGGGCAGAAATACGGGACAGCTGTGCTAGCTAACTGGCTATCGTCAAGCTAACGTGTCAAGGATTTTTGGAAACACTCGACAACATGCTCGCTCGTATGTTATTTAACCTCCTGAACAACCTCCATGTCGTTGAGAAGTTGGCAGAGTCTCGACCGATTCGCAGGGCGGCCCAGATAACAGCCTACGCCATCACCAAAGCTCAGATAGCCGGCAGGGATGCCTCTGAGCGGGTCATGCGGTCCCAGACGCTGCGGCAGGTCCGGGACGAGGCCGGCAGAGTCCCTGGTGACCTGGGAGAGATGGGCAGCCGCCTCAGGCGAGTCAGAGAAACATTTGTGAAAGAAGTGAAGGAGGGATTAAAGGACGGATCCAGACAGATCAAGAAATAAAAGAGGACAGGCTGGCTGTAGGATGTTACAGTGACCGGTAATACACGGATAGCACCTGGGTGGCCGGTTATTTATAAGATGACaacatgtttttgtaatttattgAACGGCACAATCTGTCTCAGTAATGCACGACAACAGTTTGATGGTTAACTGCAACATGTTGGACGCTGACCAAGTTCACAATCAAGAAATCAGGAATGCTGGTTGTTAAGGTCCACACTGACCTGCAATATATGGCCAGATATTTTATGATAAACTGTGGctaaacaaaataaattcaCTTCATTCACATTTCTGAGAATCCATGGAAATCTGAAGTGTTTATTGCATCTTTCATGTCCCTGTGGAAAAGTAGGAATGGTCTTGGAAAGTGAGGTGGAAGTTTGGATTAGtgtgcacttaaaaaaaaaaattaaattcatgattcaaagtaatttaaatataaaCAGAGCCCTTGAACTACCTTTTATCGATGACCTTTTCACATTAATGTGCGATACATAACCACATACTACTGGTAGTTCAACCATGTCCTGTTTATCCATTTCCCTCCACCCATGTGCACCATGACACCAATCCTGCCGAAAAGGTAAATAATTTTGTTGGCAAATAtgtgatgat
>XM_039811575.1
ACCGTTTGCCACAACGTTGAAGTTAGCTTCTTATTCGTAGATTCCGAGTTGTGGATTCGTGCGTCGAGCGAAGGATAATGTTAAGTGGAGACCTAAAGGAATCGCATCTAAACCAACTTCAGCCTCACTCCACAGTATGTTATGTCATGTAATGCAACCTAATGGTCGGTTCAGCTGAGGGCAGAAATACGGGACAGCTGTGCTAGCTAACTGGCTATCGTCAAGCTAACGTGTCAAGGATTTTTGGAAACACTCGACAACATGCTCGCTCGTATGTTATTTAACCTCCTGAACAACCTCCATGTCGTTGAGAAGTTGGCAGAGTCTCGACCGATTCGCAGGGCGGCCCAGATAACAGCCTACGCCATCACCAAAGCTCAGATAGCCGGCAGGGATGCCTCTGAGCGGGTCATGCGGTCCCAGACGCTGCGGCAGGTCCGGGACGAGGCCGGCAGAGTCCCTGGTGACCTGGGAGAGATGGGCAGCCGCCTCAGGCGAGTCAGAGAAACATTTGTGAAAGAAGTGAAGGAGGGATTAAAGGACGGATCCAGACAGATCAAGAAATAAAAGAGGACAGGCTGGCTGTAGGATGTTACAGTGACCGGTAATACACGGATAGCACCTGGGTGGCCGGTTATTTATAAGATGACaacatgtttttgtaatttattgAACGGCACAATCTGTCTCAGTAATGCACGACAACAGTTTGATGGTTAACTGCAACATGTTGGACGCTGACCAAGTTCACAATCAAGAAATCAGGAATGCTGGTTGTTAAGGTCCACACTGACCTGCAATATATGGCCAGATATTTTATGATAAACTGTGGctaaacaaaataaattcaCTTCATTCACATTTCTGAGAATCCATGGAAATCTGAAGTGTTTATTGCATCTTTCATGTCCCTGTGGAAAAGTAGGAATGGTCTTGGAAAGTGAGGTGGAAGTTTGGATTAGtgtgcacttaaaaaaaaaaattaaattcatgattcaaagtaatttaaatataaaCAGAGCCCTTGAACTACCTTTTATCGATGACCTTTTCACATTAATGTGCGATACATAACCACATACTACTGGTAGTTCAACCATGTCCTGTTTATCCATTTCCCTCCACCCATGTGCACCATGACACCAATCCTGCCGAAAAGGTAAATAATTTTGTTGGCAAATAtgtgatgatatatatatatatatatactatgaattttgttGTGACTGTGTAAATAAACACAACAGAACTTTGACTGCTA

Function

NR:

description
PREDICTED: uncharacterized protein DKFZp762I1415-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU127615 False 1147 TUCP 0.45 2 10946976 10948246
XM_039811575.1 True 1261 mRNA 0.43 2 10946932 10948316

Neighbor

gene id symbol gene type direction distance location
LOC120566056 LOC103374891,LOC100702684,LOC101467020,LOC102305063 coding upstream 187003 10748929 ~ 10759929 (+)
LOC120566058 LOC103374891,LOC102305063,LOC100702684,LOC101467020 coding upstream 212971 10722902 ~ 10733961 (+)
tm4sf18 LOC100702951,LOC102305373,LOC101466751,LOC102228636,LOC103155263,LOC104936000,LOC103374892,LOC105936905 coding upstream 232050 10696023 ~ 10714882 (+)
LOC120565966 LOC101466472,LOC102777579,LOC108238401,LOC101066382,LOC106527066 coding upstream 255846 10681539 ~ 10691086 (+)
slc25a24 slc25a24,LOC104951356,LOC104935995 coding upstream 278046 10653639 ~ 10668886 (+)
LOC120565506 NA coding downstream 156825 11105141 ~ 11107198 (+)
ccdc17 NA coding downstream 274206 11222522 ~ 11237901 (+)
LOC120565497 LOC103370597 coding downstream 300118 11248434 ~ 11304093 (+)
trnam-cau_8 NA coding downstream 300259 11248575 ~ 11248647 (+)
LOC120566075 LOC101470345,LOC102300495,LOC102205443,LOC103370586 coding downstream 363422 11311738 ~ 11356871 (+)
G94587 NA non-coding upstream 235436 10711203 ~ 10711496 (+)
G94515 NA non-coding upstream 415551 10530696 ~ 10531381 (+)
G94450 NA non-coding upstream 437394 10507652 ~ 10509538 (+)
G94426 NA non-coding upstream 541699 10339236 ~ 10405233 (+)
G94604 NA non-coding downstream 187 10948503 ~ 10948822 (+)
G94609 NA non-coding downstream 15232 10963548 ~ 10977065 (+)
G94613 NA non-coding downstream 48161 10996477 ~ 10997201 (+)
G94674 NA non-coding downstream 153012 11101328 ~ 11101569 (+)
G94676 NA non-coding downstream 154160 11102476 ~ 11102815 (+)
G94598 NA other upstream 5688 10916925 ~ 10941244 (+)
atp11b atp11b other upstream 532106 10363462 ~ 10414826 (+)
LOC120565490 NA other upstream 787051 9985719 ~ 10159881 (+)
ttc14 ttc14 other upstream 998695 9933613 ~ 9948237 (+)
G94376 NA other upstream 1043743 9902285 ~ 9903189 (+)
LOC120565923 LOC103370579,LOC100695501,LOC102794561,LOC101470646,LOC102226407,LOC102291616 other downstream 411374 11359690 ~ 11458146 (+)
znhit6 znhit6,LOC102790327 other downstream 840819 11789135 ~ 11821882 (+)
lrp8 LOC103355569 other downstream 1213322 12161638 ~ 12443080 (+)
ror1 ror1 other downstream 1794489 12742805 ~ 12865842 (+)
raver2 raver2 other downstream 2057252 13005568 ~ 13100445 (+)

Expression


Co-expression Network