LOC120565776


Basic Information

Item Value
gene id LOC120565776
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 13335734 ~ 13342098 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU128265
ACAAGATGCCGCTCCCAAACCAAGACATTCCGAAAGACTTTTAGTCGTTTCACAGCTTCAGAGTCGCCAGGGTGTCCAACTCCATCAGGGTTCTCTCTGTAGGGACATCGTAGTTTCCTGTTTCTGCGGGTGGTGCAACTGGTGTCAGATGGATCGTGAGTTAAAAAATCGAGAAAACACTCCCACTGTTGTCAATGTGCAGCATCAAAATGTTGTAAACGTGAATGTGCAGCAGCCGACTCCAATGATGATGGCTCCTATAAACCCTGCTCCTATGATGATGGCTCCTATAAACCCTGCTCCTATGATGATGGCTCCCATAAACCCTGCTCCTATGATGATAGCTCCTGCTGTGGGTCCTGAACAGCCTGCTCAAATGATGATGCCTCCTGTATACCAATTAGTGGAAACCAAAGAGTGAgagtatgatgatgatgactttCAGTTTCTTAACCCTCACGGGTCTAATCCAGTTTTTCCCATATTTGGTTTGCCTGGTCTCCTTGTGTAATAATGCTTGTATAACCCTGTGATGCACAATCAAGTTATAGACATATTCTTTTTCAGGACGACCTGGGCTATCAGGATATGTATGCTGCAGGGATGTCACATGAATGTATGCATTGTTATATGACTATAAAAgatgacagaaacaaaaaacagaaattgaagggttttttattgttgcatttattttttattgttttattatttttgtgttgtgcatctgttgtatgttattgtttattcattgattgtgttcagcactttggtcaacagtgttgtttttaaggtgctttataaata
>TU128266
ACAAGATGCCGCTCCCAAACCAAGACATTCCGAAAGACTTTTAGTCGTTTCACAGCTTCAGAGTCGCCAGGGTGTCCAACTCCATCAGGTTcattgttcagtgtgtgtggcAGAAGTAGTCCAACATCCGATGGAAGAACGACCCTTAAAAGACTGGAACAGTGGTCTCTTTGACTGCTTTGAAAACGCGAATACTTGGTTCTCTCTGTAGGGACATCGTAGTTTCCTGTTTCTGCGGGTGGTGCAACTGGTGTCAGATGGATCGTGAGTTAAAAAATCGAGAAAACACTCCCACTGTTGTCAATGTGCAGCATCAAAATGTTGTAAACGTGAATGTGCAGCAGCCGACTCCAATGATGATGGCTCCTATAAACCCTGCTCCTATGATGATGGCTCCTATAAACCCTGCTCCTATGATGATGGCTCCCATAAACCCTGCTCCTATGATGATAGCTCCTGCTGTGGGTCCTGAACAGCCTGCTCAAATGATGATGCCTCCTGTATACCAATTAGTGGAAACCAAAGAGTGAgagtatgatgatgatgactttCAGTTTCTTAACCCTCACGGGTCTAATCCAGTTTTTCCCATATTTGGTTTGCCTGGTCTCCTTGTGTAATAATGCTTGTATAACCCTGTGATGCACAATCAAGTTATAGACATATTCTTTTTCAGGACGACCTGGGCTATCAGGATATGTATGCTGCAGGGATGTCACATGAATGTATGCATTGTTATATGACTATAAAAgatgacagaaacaaaaaacagaaattgaagggttttttattgttgcatttattttttattgttttattatttttgtgttgtgcatctgttgtatgttattgtttattcattgattgtgttcagcactttggtcaacagtgttgtttttaaggtgctttataaata
>XM_039811793.1
ACTTTTAGTCGTTTCACAGCTTCAGAGTCGCCAGGGTGTCCAACTCCATCAGGTTcattgttcagtgtgtgtggcAGAAGTAGTCCAACATCCGATGGAAGAACGACCCTTAAAAGACTGGAACAGTGGTCTCTTTGACTGCTTTGAAAACGCGAATACTTttTGCTATGGCTTCTGGTGCTGCCCTTGCCTTGCCTGTACAGTTTCAGGAAAATTTGGAGAGAACAGTTGTCTCCCATTATGTGACATGGCTGGCCCCGCCATAATGGCCATCTTTGGGATACCTATGTGTATGGCGCCTCCTGCAGGTCTGTCCTTAAGGGCTGCCATGCGAAACAGATATGCTATCAAGGGTTCTCTCTGTAGGGACATCGTAGTTTCCTGTTTCTGCGGGTGGTGCAACTGGTGTCAGATGGATCGTGAGTTAAAAAATCGAGAAAACACTCCCACTGTTGTCAATGTGCAGCATCAAAATGTTGTAAACGTGAATGTGCAGCAGCCGACTCCAATGATGATGGCTCCTATAAACCCTGCTCCTATGATGATGGCTCCTATAAACCCTGCTCCTATGATGATGGCTCCCATAAACCCTGCTCCTATGATGATAGCTCCTGCTGTGGGTCCTGAACAGCCTGCTCAAATGATGATGCCTCCTGTATACCAATTAGTGGAAACCAAAGAGTGAgagtatgatgatgatgactttCAGTTTCTTAACCCTCACGGGTCTAATCCAGTTTTTCCCATATTTGGTTTGCCTGGTCTCCTTGTGTAATAATGCTTGTATAACCCTGTGATGCACAATCAAGTTATAGACATATTCTTTTTCAGGACGACCTGGGCTATCAGGATATGTATGCTGCAGGGATGTCACATGAATGTATGCATTGTTATATGACTATAAAAgatgacagaaacaaaaaa

Function

GO:

id name namespace
GO:0005886 plasma membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU128265 False 807 lncRNA 0.41 2 13335734 13342098
TU128266 False 916 lncRNA 0.41 3 13335734 13342098
XM_039811793.1 True 924 mRNA 0.45 4 13335770 13341951

Neighbor

gene id symbol gene type direction distance location
LOC120565057 NA coding upstream 636 13328617 ~ 13335098 (+)
LOC120565891 NA coding upstream 15037 13317776 ~ 13320697 (+)
ttc22 ttc22 coding upstream 30500 13293866 ~ 13305234 (+)
lepr NA coding upstream 77173 13211481 ~ 13258561 (+)
dnajc6 dnajc6,LOC102786137 coding upstream 131365 13163705 ~ 13204369 (+)
LOC120565910 NA coding downstream 14274 13356372 ~ 13359125 (+)
LOC120565922 NA coding downstream 25196 13367294 ~ 13369007 (+)
insl5a LOC104957723,LOC104925860,LOC103372744 coding downstream 71263 13413361 ~ 13415999 (+)
swt1 LOC102799620 coding downstream 453996 13796094 ~ 13820008 (+)
hmcn1 hmcn1 coding downstream 514936 13857034 ~ 13947979 (+)
G95040 NA non-coding upstream 188939 13146305 ~ 13146795 (+)
G95027 jak1,LOC102785183 non-coding upstream 223414 13107689 ~ 13112320 (+)
G95002 NA non-coding upstream 340080 12995235 ~ 12995654 (+)
G94997 NA non-coding upstream 469483 12865912 ~ 12866251 (+)
G94813 NA non-coding upstream 1415697 11916631 ~ 11920037 (+)
LOC120564967 NA non-coding downstream 30346 13372444 ~ 13375668 (+)
G95114 NA non-coding downstream 57732 13399830 ~ 13400932 (+)
G95139 NA non-coding downstream 144938 13487036 ~ 13487366 (+)
G95148 NA non-coding downstream 168095 13510193 ~ 13514065 (+)
LOC120565805 NA non-coding downstream 362269 13704367 ~ 13747072 (+)
G95046 NA other upstream 115362 13173025 ~ 13220372 (+)
raver2 raver2 other upstream 235289 13005568 ~ 13100445 (+)
ror1 ror1 other upstream 469892 12742805 ~ 12865842 (+)
lrp8 LOC103355569 other upstream 892654 12161638 ~ 12443080 (+)
znhit6 znhit6,LOC102790327 other upstream 1513852 11789135 ~ 11821882 (+)
LOC120564964 LOC102797871,LOC101481459,LOC102301033,LOC106675533,LOC102797273,LOC102300313,LOC102200286 other downstream 37300 13379398 ~ 13382747 (+)
LOC120564965 LOC102299696 other downstream 48725 13390823 ~ 13399744 (+)
G95460 NA other downstream 1277260 14619358 ~ 14621413 (+)
LOC120565380 NA other downstream 1347284 14689382 ~ 14704353 (+)
dennd1b NA other downstream 1468270 14810368 ~ 14923845 (+)

Expression


Co-expression Network