LOC120564965 (LOC102299696)


Basic Information

Item Value
gene id LOC120564965
gene name LOC102299696
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 13390823 ~ 13399744 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU128288
CTTTTAGTCGTTTTACAGCTTCAGAGTCGCCAGGGTGTCCAACTCCATCAGgtTGCTATGGTTTCTGGTGCTGCCCTTGCCTTGCCTGCACAGTTTCAGGAAGATTTGGAGAGAACCGTTGTCTCCCATTATGTGACATATGCAGCCCTGCCATATTATCAGCCTTGGGGATACCTCTGTTTGCGGCGCCTCCTGCAGGCCTGTCCTTAAGGGCTGCCATGCGAAATAGATATGGTATCAAGGGTTCTCTCTGTAAGGACATCGCAGTTTCCTGTTTCTGCGGGTGGTGCAACTGGTGTCAGATGCATCGTGAGTTAAGACATCGCGAAAAAACTCCCACTGTCGTCAACATTACAAACGTGAACGTGCATCAGCCTGCTCCAGTGATGATGACTCCTGTATACCAATATCAGTGAAAACCAAAGATTGAGAGTATGATGATGAATAACTTTCACTTTCTTAATAATCATGACAATTAGAGTCTAATAATTGTTGACTATCACGTCAAATTATTTTCTGAAGTTTCTGTTTAAAACAAATCgaatttactgtatatatccTAAACCTctcttattttgtttctgtgaagTTTGTTCCAAGTCGGATTCACCAAAACTCTCTTACACAAACCTGAAGTAAATTAATCAGTTCATCATGAATGTCACCTGTTGTTTGTACGATTATATCATAAGCATAATTGACCATGCAAGGCTACCTGATACTGTTGCAGTATGTTTGTGGGCAAGTTTCATTCACAAAAAATGAATTTCACACTGCTGAGCTTCAACTCCTCTTGTCATAAATCACCTGACAAAAACTTTAGCAGTCAGTAATCATATTAGAGAATCAAAAACTATTAGAAACTATTAATAATACAATGACGTTTCATCATAAGAGTTACAGACATAAAGAGTGAATGGTTTGACATGAAGTCCTATGCTACAAACCATCTTTATAAAGCAAAGCAGTCCATGACTAATATGTGAGGTGGTCAAGAGAATGTGACAACTCCCCCTGTGGATGAAGTCTATCTGTTGAAAATTTTGTTCGTACCTACGATAAAATTTATAAATGCCAAAAAATCCCTCGTACAACCCACTTAACAACAAATCTGTTCCTCTGAGTGTTTTTATATGTATAGTGCTATCTAACATTGCTAGTTTGCAGTTGGCTGTTAGTCTTTGCTGGGTCTTCAAATGCAACTTTTCGGCCAAGACACAGGAAAGAGTGTTCTATGTTCATGAGGCGATTCAACAGTCGGCCTTCATCGCCACTAATTAT
>XM_039810238.1
GTCGTTTTACAGCTTCAGAGTCGCCAGGGTGTCCAACTCCATCAGGTTCATTGTTCACTGTGTGTGGCTGAAGAAGTCCAACATCCAATGGCAGCACAAGACTGGAGCAGTGGTCTCTGTGACTGCTTTGAAAGCTCAAGTACTTgtTGCTATGGTTTCTGGTGCTGCCCTTGCCTTGCCTGCACAGTTTCAGGAAGATTTGGAGAGAACCGTTGTCTCCCATTATGTGACATATGCAGCCCTGCCATATTATCAGCCTTGGGGATACCTCTGTTTGCGGCGCCTCCTGCAGGCCTGTCCTTAAGGGCTGCCATGCGAAATAGATATGGTATCAAGGGTTCTCTCTGTAAGGACATCGCAGTTTCCTGTTTCTGCGGGTGGTGCAACTGGTGTCAGATGCATCGTGAGTTAAGACATCGCGAAAAAACTCCCACTGTCGTCAACATTACAAACGTGAACGTGCATCAGCCTGCTCCAGTGATGATGACTCCTGTATACCAATATCAGTGAAAACCAAAGATTGAGAGTATGATGATGAATAACTTTCACTTTCTTAATAATCATGACAATTAGAGTCTAATAATTGTTGACTATCACGTCAAATTATTTTCTGAAGTTTCTGTTTAAAACAAATCgaatttactgtatatatccTAAACCTctcttattttgtttctgtgaagTTTGTTCCAAGTCGGATTCACCAAAACTCTCTTACACAAACCTGAAGTAAATTAATCAGTTCATCATGAATGTCACCTGTTGTTTGTACGATTATATCATAAGCATAATTGACCATGCAAGGCTACCTGATACTGTTGCAGTATGTTTGTGGGCAAGTTTCATTCACAAAAAATGAATTTCACACTGCTGAGCTTCAACTCCTCTTGTCATAAATCACCTGACAAAAACTTTAGCAGTCAGTAATCATATTAGAGAATCAAAAACTATTAGAAACTATTAATAATACAATGACGTTTCATCATAAGAGTTACAGACATAAAGAGTGAATGGTTTGACATGAAGTCCTATGCTACAAACCATCTTTATAAAGCAAAGCAGTCCATGACTAATATGTGAGGTGGTCAAGAGAATGTGACAACTCCCCCTGTGGATGAAGTCTATCTGTTGAAAATTTTGTTCGTACCTACGATAAAATTTATAAATGCCAAAAAATCCCTCGTACAACCCACTTAACAACAAATCTGTTCCTCTGAGTGTTTTTATATGTATAGTGCTATCTAACATTGCTAGTTTGCAGTTGGCTGTTAGTCTTTGCTGGGTCTTCAAATGCAACTTTTCGGCCAAGACACAGGAAAGAGTGTTCTATGTTCATGAGGCGATTCAACAGTCGGCCTTCATCGCCACTAATTATATGATATCAGTTTGATTTGTTTCTACCTATTaactgttttgttctgtttaattaCTGTTTGGTATTATGTTTGTCATTTAATTGTCTAATTAAGCATTTTAATAAAGTTGATTAACGTTGTTTTCAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU128288 False 1281 lncRNA 0.40 3 13390823 13399617
XM_039810238.1 True 1502 mRNA 0.39 4 13390829 13399744

Neighbor

gene id symbol gene type direction distance location
LOC120565922 NA coding upstream 21816 13367294 ~ 13369007 (+)
LOC120565910 NA coding upstream 31698 13356372 ~ 13359125 (+)
LOC120565057 NA coding upstream 55725 13328617 ~ 13335098 (+)
LOC120565891 NA coding upstream 70126 13317776 ~ 13320697 (+)
ttc22 ttc22 coding upstream 85589 13293866 ~ 13305234 (+)
insl5a LOC104957723,LOC104925860,LOC103372744 coding downstream 13617 13413361 ~ 13415999 (+)
swt1 LOC102799620 coding downstream 396350 13796094 ~ 13820008 (+)
hmcn1 hmcn1 coding downstream 457290 13857034 ~ 13947979 (+)
ptgs2b ptgs2 coding downstream 595751 13995495 ~ 13999954 (+)
pdcb pdc,LOC104921827,LOC102780712 coding downstream 625011 14024755 ~ 14028859 (+)
LOC120564967 NA non-coding upstream 15155 13372444 ~ 13375668 (+)
G95040 NA non-coding upstream 244028 13146305 ~ 13146795 (+)
G95027 jak1,LOC102785183 non-coding upstream 278503 13107689 ~ 13112320 (+)
G95002 NA non-coding upstream 395169 12995235 ~ 12995654 (+)
G94997 NA non-coding upstream 524572 12865912 ~ 12866251 (+)
G95114 NA non-coding downstream 86 13399830 ~ 13400932 (+)
G95139 NA non-coding downstream 87292 13487036 ~ 13487366 (+)
G95148 NA non-coding downstream 110449 13510193 ~ 13514065 (+)
LOC120565805 NA non-coding downstream 304623 13704367 ~ 13747072 (+)
G95173 ivns1abp non-coding downstream 423109 13822853 ~ 13825269 (+)
LOC120564964 LOC102797871,LOC101481459,LOC102301033,LOC106675533,LOC102797273,LOC102300313,LOC102200286 other upstream 8076 13379398 ~ 13382747 (+)
LOC120565776 NA other upstream 48725 13335734 ~ 13342098 (+)
G95046 NA other upstream 170451 13173025 ~ 13220372 (+)
raver2 raver2 other upstream 290378 13005568 ~ 13100445 (+)
ror1 ror1 other upstream 524981 12742805 ~ 12865842 (+)
G95460 NA other downstream 1219614 14619358 ~ 14621413 (+)
LOC120565380 NA other downstream 1289638 14689382 ~ 14704353 (+)
dennd1b NA other downstream 1410624 14810368 ~ 14923845 (+)
LOC120564959 LOC104946909,LOC103360792,LOC102294988,LOC101486556,LOC102197099 other downstream 2124185 15523929 ~ 15632812 (+)
kcnn1b LOC104945110,LOC103355562 other downstream 2890079 16289823 ~ 16301000 (+)

Expression


Co-expression Network