G95496 (crb1,LOC102787887,LOC102294192,LOC103365562)


Basic Information

Item Value
gene id G95496
gene name crb1,LOC102787887,LOC102294192,LOC103365562
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 14930512 ~ 14932081 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU128812
cacacattcattcattgcCTCCCCAGTCCACCTCAGGCTCATCGTCCAGCCTGAGGATGAGGTAGGACAGCAGCTGGAAGAGGTTCTGCCACAGCAGCAGGGCCACGTAAAAGTAAATGTCGCTTACGTCCGTCTGGCACGTTTCTCCAGCGTAGCTCATTTCACACACGCAGAAGAACTTGTTGATGAGGTTGCGGCAGTAGCCTCCGTTCAGACAGGGGTTGGACTTGCACTCGTCCACCTCCTGCTCAcacCGGTGTCCAGTGAAGCCAGGTGGACAGTCGCAGGACAGCTCTCGGTCAGTGCAGTTGCCTCCATTGAAGCAGGTGTAGTTTCTGTTGTCATCGCCGCACACAGAAACAGGCAGTTTAGGCCGTACATTTCTGACAACAAGGTACCACGGAATTTCTTCAATGC
>TU128813
TGCCAACTAGCCAATGCAAGTGTGACGGCAGTGTTCTGTCTGAACTTATACTATGCTCTGCAGATAAATCAGGGGACGACAGTATATTTTAGTTCTGGATCCATTTTATTTACTTACAGGTatcatttaataaaataaacatcttttttttgtccTACCGGTGTCCAGTGAAGCCAGGTGGACAGTCGCAGGACAGCTCTCGGTCAGTGCAGTTGCCTCCATTGAAGCAGGTGTAGTTTCTGTTGTCATCGCCGCACACAGAAACAGGCAGTTTAGGCCGTACATTTCTGACAACAAGGTACCACGGAATTTCTTCAATGC

Function

symbol description
crb1 Predicted to enable calcium ion binding activity. Acts upstream of or within cell projection morphogenesis and establishment or maintenance of epithelial cell apical/basal polarity. Part of protein-containing complex. Is expressed in nervous system. Human ortholog(s) of this gene implicated in pigmented paravenous chorioretinal atrophy and retinal disease (multiple). Orthologous to human CRB1 (crumbs cell polarity complex component 1).

NR:

description
PREDICTED: protein crumbs homolog 1-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU128812 True 417 lncRNA 0.54 3 14930512 14932081
TU128813 False 321 lncRNA 0.44 2 14931069 14932081

Neighbor

gene id symbol gene type direction distance location
abhd8b abhd8,LOC103359436 coding upstream 293458 14624279 ~ 14637054 (+)
ano8b ano8,LOC103359425,LOC104965807 coding upstream 311309 14579027 ~ 14619203 (+)
plvapb NA coding upstream 375592 14548589 ~ 14554920 (+)
babam1 babam1 coding upstream 385984 14537576 ~ 14544528 (+)
si:ch73-61d6.3 LOC107392864,LOC108238350,LOC103359431 coding upstream 431938 14480454 ~ 14498574 (+)
axdnd1 axdnd1 coding downstream 17087 14949168 ~ 14961237 (+)
tdrd5 NA coding downstream 34185 14966266 ~ 14984677 (+)
fam163ab fam163a,LOC102222863 coding downstream 69088 15001169 ~ 15026319 (+)
rabgap1l rabgap1l,LOC106574055 coding downstream 94930 15027011 ~ 15153577 (+)
gpr52 gpr52,LOC104944265 coding downstream 140517 15072598 ~ 15078471 (+)
G95493 NA non-coding upstream 4909 14923952 ~ 14925603 (+)
G95492 NA non-coding upstream 51225 14879082 ~ 14879287 (+)
LOC120565827 NA non-coding upstream 138906 14787068 ~ 14791606 (+)
G95447 NA non-coding upstream 291466 14546536 ~ 14639046 (+)
G95372 NA non-coding upstream 561286 14368922 ~ 14369226 (+)
LOC120565370 NA non-coding downstream 290052 15222133 ~ 15268185 (+)
G95640 NA non-coding downstream 364203 15296284 ~ 15297193 (+)
G95681 NA non-coding downstream 455917 15387998 ~ 15389142 (+)
G95710 NA non-coding downstream 542513 15474594 ~ 15478157 (+)
G95729 NA non-coding downstream 700832 15632913 ~ 15633568 (+)
dennd1b NA other upstream 6667 14810368 ~ 14923845 (+)
LOC120565380 NA other upstream 226159 14689382 ~ 14704353 (+)
G95460 NA other upstream 309099 14619358 ~ 14621413 (+)
LOC120564965 LOC102299696 other upstream 1530768 13390823 ~ 13399744 (+)
LOC120564964 LOC102797871,LOC101481459,LOC102301033,LOC106675533,LOC102797273,LOC102300313,LOC102200286 other upstream 1547765 13379398 ~ 13382747 (+)
LOC120564959 LOC104946909,LOC103360792,LOC102294988,LOC101486556,LOC102197099 other downstream 591848 15523929 ~ 15632812 (+)
kcnn1b LOC104945110,LOC103355562 other downstream 1357742 16289823 ~ 16301000 (+)
kdm4b kdm4b,LOC104945107,LOC108234360,LOC108412081 other downstream 1388413 16320494 ~ 16376449 (+)
nppc nppc,LOC104932751,LOC103372810 other downstream 2923550 17855631 ~ 17859411 (+)
nmur1a LOC103368681,LOC104952433 other downstream 3714622 18646703 ~ 18665113 (+)

Expression


Co-expression Network