LOC120564955


Basic Information

Item Value
gene id LOC120564955
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 17620798 ~ 17636720 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU129778
atcctgatcaaagataactcctaaatttctaacagtggtgctggaggccagggcaacaccatccagagtagctatatctctagataatgaagttcggaggtgtttagggcccagcacaataacttcagttttgttagggtttaacatcagaaaattataggtcatccaggattttatatccttaatgcactcttgaaattttgctagctgactggtttcgtctggtttgattgacaagtataattgggtgtcatccgcataacagtgaaagttaattgagtgttttctaataatattgcctagaggaagcatatataaggagaatagaattggtccaagcactgagccttgaggaaccccatggctaacctTTAGCGTgcacttggaggatttatcattaacattcacaaattgagatcgatcagagaaataggacctaaaccaactcagagcaattcctttaatgccaaccaagtgttccaatctctgtaacaggattgaatggtcaattgtgtcaaatgcagcactaagatctagtaaaacaagaatggagacaagacctttgtctgcagcagttaaaaggtcgttagtaattttcaccaatCAGGTGAAAGGGGAAAGAGCATACTGAATGCAGTCATTTAGCAATCATCAATTTCTGCATCTTTCTGATTTTCTTTGTTCCAAAAAGATGTTGAAATAGAAACACTCTCAATGAGGTGTTGACAGACTGGTTATCATGTAGATTAATTTAGTTTTGAAATGGATTTATTACAAAAGACTGTAGATGTTtcatcagatgaaaaaaaaaaaagattaaatccTTATAACCTTTATTCTTTGACACACCATGACTGCCTGTATCCCCTCCACACTAGAGAAACCTCCTACTACTCTTCTGTTATGTTTGGCTATTTTCATATGTCGCCGGTTTCCAGCAATGCTACAGTGGAACACCATAAGAAAAGAAGGTGTGTGGAAATAATAATTtcacagcttttctttgagcaTTCAGCCAGTTCCttttatgtgtatttttgaGTGACAATAAATCTCAGAAAGAGAACTTTGTACTGCCTGATGCTTGCTTTTGCACAATGGGAGCTTTGTATAGCCTCAGACAAACTCTGGAAGTGCAGGAGCATGGGTAAGGGTAAGGGTAAGGGTAAACATGCTTGATGGTTGGTATTGTACACACCATGGGCATATTTCTGACACTCTGTCATACAATACGCAATGCAGGGTGAGGTGAAAGCACCAGTTTTAgtgggaaagaaaaagaagaaaaaaaactcactatCGAAACAATTCAGTGAAGTGTAGAATATAGCAGGGACTATTTTTAAACTGGGAAAAACCCCACAGCCTGTACTTTATGAGAAGGTCATGCAAGGCAAGATGGAGAGGTGCCATGAATGGGGTTCTGGCCGATGTGCAGCTGCcgttttgtgtctttttctccctctgtttCCTTTCCTCACTTCCTCCAGTTTGTTTCAGGGTCTGCTGGTGTCTTTGTGTGAAGTTACTGCTTATGAAATAGAAATACTGTACACTTTTTACTATATCAGTTGGGTTTTCGCAAAAATGTATGTACAAACGGGACATGTGATGTTTGCTCACTGCTGTTTTGAAACAATATTGCTTTGGTGGTTGCTACTGCAGGCCAACAGTATAGGAATCTGGCAAAAATAAGCAAATGATGGTTTTACAATCAGTCAGTGTGCTGGGACCTTGAGACAAATTAGTTATTCTGTGTTGAATCCATGTGTGAAAGTCATGCATCTTCAGAATGCTGAcagattattttgtttaaatacTCAATGATTTAATGTTTTTGCACTTTACTTCTCATATACCACACTACCAAAATTACCTGTCTTAATAAGTAATTTGGTCTCATATTCTCCTATTTCTGTTTTGACCCTTATTTTAGGATTGTTCACACAATAGATTGCATTTGGTAAAAACTATATTTCTATACAAATACGCTTACACAGTCTATGACTTTATTTCTACATAAACCACATAGGATGTGTGTCACCTTTCTCTAgtcatttgctgcatgtccttGCCATGTTAAatgcaaaaagagagagaacatcAGATATCAGCGCGGCTGCATCCTCCCTACACCAGATCCAGCCAGATCCACAGATAGACGTGAGGCTGACGGAGAGAGTATACAGCCCAGACAGGATATTAGAATGGACGTTTCCTTCTTCAGTACGCCACAGGCAGGGCCCTCTCCCACTTGTCTTCTCTGTagaaagacacagagaaaaGATAAAGATGTGAGCGGAGCTGACAGGCTGCTGGAGCCACGGTCTCCTTCGCTGTTTGCATCTTGAGTCGGTTTCTGATTTGATTCTGAGAGGATGATTGTGACGGGGGCTTTTTTATTATGCGGACAACAGATGGCAAGGGATGATGCTGATCTCTATGTCCGAGATGCTGTTAACCTTCCAGGATTCAATGAGaaacaggtggtgggcccaaaCACGTGCTCTTGGCTCGGaggaaacaccaaaacagtGTAATAGCTGACATGTTGCTAATAATGCACTAAACATTGCCTGATGGGGTgattaaatgtgttttgtgtacaGTAATGTATATTTCATTTACTGTCACGTTACACATGAGTAAAAATCTAGCAGTCCTACTGTATGCAGCAGTTGTATGCAAAAGcttcatttttttccttttgagttGCTGTCTCCTCTGCTCTACTTTACCAAGCAAGTATTTTGACATTGAATACATAGTTGTTGAAACAAGCTCATAGTTATACAACACCGTGCTCATATGTTGACACTTGTGTAAATATAGCAACAGAATAAAAACTGCAGCAACATTTGCTG
>XR_005640170.1
CAGCCCAGACAGGATATTAGAATGGACGTTTCCTTCTTCAGTACGCCACAGGCAGGGCCCTCTCCCACTTGTCTTCTCTGTagaaagacacagagaaaaGATAAAGATGTGAGCGGAGCTGACAGGCTGCTGGAGCCACGGTCTCCTTCGCTGTTTGCATCTTGAGTCGGTTTCTGATTTGATTCTGAGAGGATGATTGTGACGGGGGCTTTTTTATTATGCGGACAACAGATGGCAAGGGATGATGCTGATCTCTATGTCCGAGATGGCAGCTGTTAACCTTCCAGGATTCAATGAGaaacaggtggtgggcccaaaCACGTGCTCTTGGCTCGGaggaaacaccaaaacagtGTAATAGCTGACATGTTGCTAATAATGCACTAAACATTGCCTGATGGGGTgattaaatgtgttttgtgtacaGTAATGTATATTTCATTTACTGTCACGTTACACATGAGTAAAAATCTAGCAGTCCTACTGTATGCAGCAGTTGTATGCAAAAGcttcatttttttccttttgagttGCTGTCTCCTCTGCTCTACTTTACCAAGCAAGTATTTTGACATTGAATACATAGTTGTTGAAACAAGCTCATAGTTATACAACACCGTGCTCATATGTTGACACTTGTGTAAATATAGCAACAGAATAAAAACTGCAGCAACATTTGCTGTCATCCATA
>XR_005640171.1
CAGCCCAGACAGGATATTAGAATGGACGTTTCCTTCTTCAGTACGCCACAGGCAGGGCCCTCTCCCACTTGTCTTCTCTGTagaaagacacagagaaaaGATAAAGATGTGAGCGGAGCTGACAGGCTGCTGGAGCCACGGTCTCCTTCGCTGTTTGCATCTTGAGTCGGTTTCTGATTTGATTCTGAGAGGATGATTGTGACGGGGGCTTTTTTATTATGCGGACAACAGATGGCAAGGGATGATGCTGATCTCTATGTCCGAGATGAGAAGTGCTGGAAGCATTCCCAGAGTTACGGCAGGCTGAGGCTGCTGGTGATGACATCACCCTGAGACGACCTAATTGGGCAGCTGTTAACCTTCCAGGATTCAATGAGaaacaggtggtgggcccaaaCACGTGCTCTTGGCTCGGaggaaacaccaaaacagtGTAATAGCTGACATGTTGCTAATAATGCACTAAACATTGCCTGATGGGGTgattaaatgtgttttgtgtacaGTAATGTATATTTCATTTACTGTCACGTTACACATGAGTAAAAATCTAGCAGTCCTACTGTATGCAGCAGTTGTATGCAAAAGcttcatttttttccttttgagttGCTGTCTCCTCTGCTCTACTTTACCAAGCAAGTATTTTGACATTGAATACATAGTTGTTGAAACAAGCTCATAGTTATACAACACCGTGCTCATATGTTGACACTTGTGTAAATATAGCAACAGAATAAAAACTGCAGCAACATTTGCTGTCATCCATA

Function

GO: NA

KEGG:

id description
ko05140 Leishmaniasis

RNA

RNA id representative length rna type GC content exon number start site end site
TU129778 True 2864 lncRNA 0.40 2 17620798 17636711
XR_005640170.1 False 691 lncRNA 0.43 2 17622984 17636720
XR_005640171.1 False 770 lncRNA 0.44 3 17622984 17636720

Neighbor

gene id symbol gene type direction distance location
LOC120565631 LOC103364917,LOC104953203 coding upstream 153288 17370102 ~ 17467510 (+)
kif14 kif14 coding upstream 251708 17344165 ~ 17369090 (+)
ddx59 ddx59 coding upstream 277249 17337825 ~ 17343549 (+)
si:zfos-943e10.1 LOC103364910,LOC104945262,LOC104928005 coding upstream 365250 17236374 ~ 17255548 (+)
tbxa2r NA coding upstream 403008 17206770 ~ 17217790 (+)
srek1ip1 srek1ip1 coding downstream 112712 17749432 ~ 17753834 (+)
ncl ncl coding downstream 227617 17864337 ~ 17875307 (+)
LOC120566215 NA coding downstream 229828 17866548 ~ 17866681 (+)
LOC120566228 NA coding downstream 231946 17868666 ~ 17868802 (+)
LOC120566229 NA coding downstream 234990 17871710 ~ 17871847 (+)
G96202 NA non-coding upstream 197520 17423065 ~ 17423278 (+)
G96160 LOC100701835,LOC102794991,LOC101468118,LOC101061816 non-coding upstream 359768 17257393 ~ 17261030 (+)
G96088 NA non-coding upstream 742717 16877876 ~ 16878081 (+)
G96086 NA non-coding upstream 848628 16771969 ~ 16772170 (+)
G96076 NA non-coding upstream 944221 16676207 ~ 16676577 (+)
LOC120565502 NA non-coding downstream 33960 17670680 ~ 17699048 (+)
G96273 NA non-coding downstream 254932 17891652 ~ 17892398 (+)
G96341 NA non-coding downstream 949908 18586628 ~ 18586965 (+)
G96353 NA non-coding downstream 976309 18613029 ~ 18613260 (+)
G96361 NA non-coding downstream 982838 18619558 ~ 18621342 (+)
kdm4b kdm4b,LOC104945107,LOC108234360,LOC108412081 other upstream 1244349 16320494 ~ 16376449 (+)
kcnn1b LOC104945110,LOC103355562 other upstream 1319798 16289823 ~ 16301000 (+)
LOC120564959 LOC104946909,LOC103360792,LOC102294988,LOC101486556,LOC102197099 other upstream 1987986 15523929 ~ 15632812 (+)
dennd1b NA other upstream 2696953 14810368 ~ 14923845 (+)
LOC120565380 NA other upstream 2916445 14689382 ~ 14704353 (+)
nppc nppc,LOC104932751,LOC103372810 other downstream 218911 17855631 ~ 17859411 (+)
nmur1a LOC103368681,LOC104952433 other downstream 1009983 18646703 ~ 18665113 (+)
G96418 tsc22d2 other downstream 1145880 18782600 ~ 18785636 (+)
G96513 NA other downstream 1894047 19530767 ~ 19531677 (+)
prkacba prkacb other downstream 2912279 20548999 ~ 20564824 (+)

Expression


Co-expression Network