LOC120565502


Basic Information

Item Value
gene id LOC120565502
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 17670680 ~ 17699048 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU129781
AGTGCAGGCATCACTGAAGACCTGACACCGGCTGAATCGGACGTCCACTGTCCTCGGCAGAATTAATCAGGTGTTATCTTATACAAACTGTATCGCCATCAGATGAAGCTGACCATCCTGCGAATGAGAATGAGTCCGCTTCGCCGGAGGAACAGACTTTTTTTCCGTCTCCAAACGACCGGAGAGGCGCAAGGGCGAGAAAATAACGCCCAAAAGTTATTGAAATGAATCGACCTGGCAcgagaagaagaaacagaacAAGCGCTTGCAGCGTTAGCAGAGGGAAGGAAGAGAAGCAGAAGAGCAAACGAGAAAAAGACAAGAGCGATGAAAGAGAGGTCCAGACATGAAGGAGGCacgcatttacacacacacgtgcaacgGCACCTAAAGTCTGTCTGCGgtctaccaccaccaccaccctgccacacacacgcacacacacacatgcctttTACGCTGGAATGGCGTCTCCGTCTTTATCTGCTGCCCTGTGATTACAGACacaatcaacacacacacacacacacacacacacacacacacacacacacagccggaGGCGCGTGAGCAGGTGAGCATTAAGTCAGGCAGCTAAACAGATCACGTCGCGGTATGATAtctgcagacaggcagacagaggagGCCGGTCTGTACCTGCAGGCAGAGAGCAACAACTCCCAGCACACTCGCTAGGAATTTTCAGTGACAGACATAAACTGGGGTTTCCACTGAAGCCAAATAGTTAAAGCCTGATTTGAAAAAGACACATTTGCTTATGAAATAATGAGAGGCCTGTATTTCAGCCCAGAATCTCATGAAAAGATTTCAAAAGAGGCTTTTGTTggttctatttttatttttttacccagAACTCTTATACATGTTGCCTACAGTGCATTAAaaacttttgtgtttttaaagaacTTTTAACATTAACTAAATTTAGCTAACAATAAAGGATGTTAATGTCATTACTCAGTTCATCACTGTCTTGATtataacatttaaatgttttattgagCTTTAGATTTCAGCTTGTATGTAGGGAGTTCTGCATATATCTTTTTAGCGTATAGTTTTCATATTCAACCCAgttcattataaaaaaaaaaacgtctcaTATAGatgcaatttgttttgtttgatctatgtttttttttccaagcaaAGGTTTGCTTTTGCATGCCCAAAATTATTGTTGTGGAGTGATAATAATGTAAGGCTACACCTTGGGGATAGTGAGATGGGAGAGTGTCCAAATACGCCCCTTCCTTTGGTCGCATGTTTAGCCTAACATTCTCCCTTCACCTCAGTTGATGAAAGGATATCCTTTGACATTAATGGAGAACAGCACATTCACACGCTACTGTAATATCGAGTAGAGATGGTTCTTTTGTTATTTCGGAGTAATTCGATAACCTCCAGTATGATTTGTCATTCTGGAATTACTAGGGTGTTTTGACATTGTCGGCAGTACTAATTGTGAAACTGACAGTATCCGTTACACATACTTGTTCTGTTAGTTTGCTTTTGTTAGCACTCCTTGGAGcagctttgacatttttttttacagctttcTTTcattcacaatctgctcagcaTATGTGGCCTTTATCTGTGGCGTCCTGTATCACATTCATAGTAATTATTTTTTGGGAGATGCCCATTGCAGTTTTGGTTTTCTACTGAGCAGCGTCACTGAACCAGCTGTTATGTTGTTGCTCAAGACAACCTCCACAGTAGTTACTAAATAAGGATGAGCTATCAGTTCATGTGTCCTGCACAGATTTTCGCAAGTAGTCCTGCAATTTACTGCACCTTAAAGCCACAAACTTGCTTCTCTTCTTTTCCATCTTTCCTTAAATTGAAGTTGTTTCTCCCATTAGGCAGATCGGCCATGTTCTGTGATCACCATTATTTCTTAGCTGAggtttttcttgtctttttcaaaGCTCTTTATATTTAGCCATAAAAACACCTTATGAATTTTTTACAAGTCACAACTCTCCCCACACAACTACCACATCCACTTATCTGAAAATGATTCAGTGGTTAAATGTCAGAGCTGTCTGTGCCATTAAGGCCAGCATGTTTGAAGGAAGGACACCCTTGCCTGCCCTCTCCATcctcccccctctgtctcttcttatttctctcccttctccttcctctctccccttAGCTCCCTCATCATCCACCCCCACCCGACCCAACCCAGGCAGGTTTGAGCGCTGATGTGCAGACCTTGTCACTCAGATTAGGGCCACATTGTCAGCTCAGGGCCCTTCTCTCTCTAGATGCGTGTCCCGAATCTTTCTTCCTACTGTCACTCTCGTCCTGCGGCCAGAGAAGACCTTATAAAGCAACATTCCTTTTAATCCACTTCTGTCAATTCCAACATTGTCACTCAAATCACTGTTCAGGAGAGTGGAGAGAGGCCGAGTTTGTGGTGTCCCTCGCAGCGAGGACTGTGCTTTTTGGCCCAAGCTTGGCTGACGTGTCAACAGCTAGCAAattggattttatttatttttttgggcatttttaggcctttatttccacaggacagatgaagacatgaaaggggagagagagggggaatgacatgcttTTCAGAGGACTGATATACACAGGGAATGACAAAGTAGAAGCAGCACTTGTGATccaaagacaaaaaagagaaGCACTACAGTCTTTACTTTTAAGCATGACTTAGAAATTAATGTCTTTAAAAATGTTCAGATATTAATACTCATTGTATTTTGCCTAAGAGTAAAGGCTATCAAAGTCATGGTGTTATTTTCAACTCTGTTTTCTGTATGAAATGAGTGTTTGGCAGGACATGATATATCCACCACATCATCTTCATCACTCCTTATCATGCTGTAAAAGAGTTCCAGCACCATAGTTATCATCCGACCACATCTTGACTCACTGCCGCAGTTTAATTGTGAAGTCGTATGTAATTGCTATACAGCAGCACTGTGCAGCTTGATTTTTGTGCTTCTCACAAAAgtcagcactttttttttctcatgatgAGCAACAATGATTCAGCAGTGTGTAATAAAA
>XR_005640264.1
CTCTCCTCTCAGCACTCAATCCCGGCGAGTGCAGGCATCACTGAAGACCTGACACCGGCTGAATCGGACGTCCACTGTCCTCGGCAGAATTAATCAGGTGTTATCTTATACAAACTGTATCGCCATCAGATGAAGCTGACCATCCTGCGAATGAGAATGAGTCCGCTTCGCCGGAGGAACAGACTTTTTTTCCGTCTCCAAACGACCGGAGAGGCGCAAGGGCGAGAAAATAACGCCCAAAAGTTATTGAAATGAATCGACCTGGCAcgagaagaagaaacagaacAAGCGCTTGCAGCGTTAGCAGAGGGAAGGAAGAGAAGCAGAAGAGCAAACGAGAAAAAGACAAGAGCGATGAAAGAGAGGTCCAGACATGAAGGAGGCacgcatttacacacacacgtgcaacgGCACCTAAAGTCTGTCTGCGgtctaccaccaccaccaccctgccacacacacgcacacacacacatgcctttTACGGTAAGAATCGGAGACCACCGAGTTAGGGGATAAtaatgttgtgaatgtgagaaAACAAACTCATTATACACTGCTATTTTCTCCTCTGAGTAATTTTAAGACAAATTGACGGCTTGTATTCCATAATGCTTTATATTCAGtaattaaaagaagaagaaattagCTGAATTCAGTAATTTAACTTCTTAAAAGTGGTTTCTTGGTGCTagtaaatatgtatttttacaTCAAATTTGGATGTCTTATTTTGGAACAAGACTTAATTTATGCAATGTTATTGTAATTTGAATTGTACGTGTATGCCATTTGtagcgtgtctctgtgtgcatgcacaAAACCTGCTTCATTTTTTTCCTTCTATTTCCATCAGTCAAAACCAATTTCACAAGTCAAGTTTAACAGCCGCACCACATATCCCACAAACCCCCATATCCAGCCCCACTTACCCACCCTGTGCCCCTCCCAGGCTTCCCAGCATCCTGCTtcgccctaaaaaaaaaaaccatgcaTGCTGAAATTAAAGTGTGTGAGGCGGCATTGTGGGAAACCCTTCCCTCCCTCTGCACTCGCTGTATTTGCCCTTCTTGTCCCTCCTTATCTTTTTCTCATTCTGCTACTGTTTTAAATATGTTCGGGCAGGGTTTATTTTGATGTTCATTAAACTGTCAAACATCTCCCcatactttagttactagacTAAAGTTCAGACTAAGGTTAACAAGGTATTAATGCAGTTCTAAATAAGATTGGCCTTTTATTTGCTCGCCTTCCATATTGCATTAAATATGATAGTTTGTCCTTTTATGATCAGTTAA
>XR_005640265.1
CCTCTCCTCTCAGCACTCAATCCCGGCGAGTGCAGGCATCACTGAAGACCTGACACCGGCTGAATCGGACGTCCACTGTCCTCGGCAGAATTAATCAGGTGTTATCTTATACAAACTGTATCGCCATCAGATGAAGCTGACCATCCTGCGAATGAGAATGAGTCCGCTTCGCCGGAGGAACAGACTTTTTTTCCGTCTCCAAACGACCGGAGAGGCGCAAGGGCGAGAAAATAACGCCCAAAAGTTATTGAAATGAATCGACCTGGCAcgagaagaagaaacagaacAAGCGCTTGCAGCGTTAGCAGAGGGAAGGAAGAGAAGCAGAAGAGCAAACGAGAAAAAGACAAGAGCGATGAAAGAGAGGTCCAGACATGAAGGAGGCacgcatttacacacacacgtgcaacgGCACCTAAAGTCTGTCTGCGgtctaccaccaccaccaccctgccacacacacgcacacacacacatgcctttTACGCTGGAATGGCGTCTCCGTCTTTATCTGCTGCCCTGTGATTACAGACacaatcaacacacacacacacacacacacacacacacacacacacacacagccggaGGCGCGTGAGCAGGTGAGCATTAAGTCAGGCAGCTAAACAGATCACGTCGCGGTATGATAtctgcagacaggcagacagaggagGCCGGTCTGTACCTGCAGGCAGAGAGCAACAACTCCCAGCACACTCGCTAGGAATTTTCAGTGACAGACATAAACTGGGGTTTCCACTGAAGCCAAATAGTTAAAGCCTGATTTGAAAAAGACACATTTGCTTATGAAATAATGAGAGGCCTGTATTTCAGCCCAGAATCTCATGAAAAGATTTCAAAAGAGGCTTTTGTTggttctatttttatttttttacccagAACTCTTATACATGTTGCCTACAGTGCATTAAaaacttttgtgtttttaaagaacTTTTAACATTAACTAAATTTAGCTAACAATAAAGGATGTTAATGTCATTACTCAGTTCATCACTGTCTTGATtataacatttaaatgttttattgagCTTTAGATTTCAGCTTGTATGTAGGGAGTTCTGCATATATCTTTTTAGCGTATAGTTTTCATATTCAACCCAgttcattataaaaaaaaaaacgtctcaTATAGatgcaatttgttttgtttgatctatgtttttttttccaagcaaAGGTTTGCTTTTGCATGCCCAAAATTATTGTTGTGGAGTGATAATAATGTAAGGCTACACCTTGGGGATAGTGAGATGGGAGAGTGTCCAAATACGCCCCTTCCTTTGGTCGCATGTTTAGCCTAACATTCTCCCTTCACCTCAGTTGATGAAAGGATATCCTTTGACATTAATGGAGAACAGCACATTCACACGCTACTGTAATATCGAGTAGAGATGGTTCTTTTGTTATTTCGGAGTAATTCGATAACCTCCAGTATGATTTGTCATTCTGGAATTACTAGGGTGTTTTGACATTGTCGGCAGTACTAATTGTGAAACTGACAGTATCCGTTACACATACTTGTTCTGTTAGTTTGCTTTTGTTAGCACTCCTTGGAGcagctttgacatttttttttacagctttcTTTcattcacaatctgctcagcaTATGTGGCCTTTATCTGTGGCGTCCTGTATCACATTCATAGTAATTATTTTTTGGGAGATGCCCATTGCAGTTTTGGTTTTCTACTGAGCAGCGTCACTGAACCAGCTGTTATGTTGTTGCTCAAGACAACCTCCACAGTAGTTACTAAATAAGGATGAGCTATCAGTTCATGTGTCCTGCACAGATTTTCGCAAGTAGTCCTGCAATTTACTGCACCTTAAAGCCACAAACTTGCTTCTCTTCTTTTCCATCTTTCCTTAAATTGAAGTTGTTTCTCCCATTAGGCAGATCGGCCATGTTCTGTGATCACCATTATTTCTTAGCTGAggtttttcttgtctttttcaaaGCTCTTTATATTTAGCCATAAAAACACCTTATGAATTTTTTACAAGTCACAACTCTCCCCACACAACTACCACATCCACTTATCTGAAAATGATTCAGTGGTTAAATGTCAGAGCTGTCTGTGCCATTAAGGCCAGCATGTTTGAAGGAAGGACACCCTTGCCTGCCCTCTCCATcctcccccctctgtctcttcttatttctctcccttctccttcctctctccccttA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU129781 True 3075 lncRNA 0.42 4 17670708 17699048
XR_005640264.1 False 1301 lncRNA 0.42 3 17670681 17694363
XR_005640265.1 False 2212 lncRNA 0.42 4 17670680 17698157

Neighbor

gene id symbol gene type direction distance location
LOC120565631 LOC103364917,LOC104953203 coding upstream 203170 17370102 ~ 17467510 (+)
kif14 kif14 coding upstream 301590 17344165 ~ 17369090 (+)
ddx59 ddx59 coding upstream 327131 17337825 ~ 17343549 (+)
si:zfos-943e10.1 LOC103364910,LOC104945262,LOC104928005 coding upstream 415132 17236374 ~ 17255548 (+)
tbxa2r NA coding upstream 452890 17206770 ~ 17217790 (+)
srek1ip1 srek1ip1 coding downstream 50384 17749432 ~ 17753834 (+)
ncl ncl coding downstream 165289 17864337 ~ 17875307 (+)
LOC120566215 NA coding downstream 167500 17866548 ~ 17866681 (+)
LOC120566228 NA coding downstream 169618 17868666 ~ 17868802 (+)
LOC120566229 NA coding downstream 172662 17871710 ~ 17871847 (+)
LOC120564955 NA non-coding upstream 33960 17620798 ~ 17636720 (+)
G96202 NA non-coding upstream 247402 17423065 ~ 17423278 (+)
G96160 LOC100701835,LOC102794991,LOC101468118,LOC101061816 non-coding upstream 409650 17257393 ~ 17261030 (+)
G96088 NA non-coding upstream 792599 16877876 ~ 16878081 (+)
G96086 NA non-coding upstream 898510 16771969 ~ 16772170 (+)
G96273 NA non-coding downstream 192604 17891652 ~ 17892398 (+)
G96341 NA non-coding downstream 887580 18586628 ~ 18586965 (+)
G96353 NA non-coding downstream 913981 18613029 ~ 18613260 (+)
G96361 NA non-coding downstream 920510 18619558 ~ 18621342 (+)
G96372 NA non-coding downstream 960594 18659642 ~ 18659881 (+)
kdm4b kdm4b,LOC104945107,LOC108234360,LOC108412081 other upstream 1294231 16320494 ~ 16376449 (+)
kcnn1b LOC104945110,LOC103355562 other upstream 1369680 16289823 ~ 16301000 (+)
LOC120564959 LOC104946909,LOC103360792,LOC102294988,LOC101486556,LOC102197099 other upstream 2037868 15523929 ~ 15632812 (+)
dennd1b NA other upstream 2746835 14810368 ~ 14923845 (+)
LOC120565380 NA other upstream 2966327 14689382 ~ 14704353 (+)
nppc nppc,LOC104932751,LOC103372810 other downstream 156583 17855631 ~ 17859411 (+)
nmur1a LOC103368681,LOC104952433 other downstream 947655 18646703 ~ 18665113 (+)
G96418 tsc22d2 other downstream 1083552 18782600 ~ 18785636 (+)
G96513 NA other downstream 1831719 19530767 ~ 19531677 (+)
prkacba prkacb other downstream 2849951 20548999 ~ 20564824 (+)

Expression


Co-expression Network