G96399


Basic Information

Item Value
gene id G96399
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 18749120 ~ 18751861 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU130032
AATAATTTTTAATAATAGACACTTTAATCTGTAGTGCACTTTAAACCTCTGCACACCTCCATGTTAAAGGCAGTCCAAAGACAATCCATCTGCTGAGTTGAGGAGGCTTTTCAGTGGAGTCGGTCGGTCACTTCATTTAGGAGCCGTGAGCTGAAGAGctcagtgttttctttaaaaaccgCCTGGTTCAAACTAAAGACACAGGGGCAGCTTATCTCTTTAATACTCCTCCGTGAGGCCGTAGGGAAATGAATATCACATGATTTGCTTTAAGTAGTGTCTCAGGAGTGTTTACCTCGTGAGGGATCGTACACAAAGCAAAGCCTGTTGATGAGGGTATAAGTACTCCGGAGACTAATCCATTAATAGATTGGTACACATAAAATTGTACTTGGGACTGAAATCCAGGGTAAACGTTTTGATAAAATGCAGATTTGTTTTCCCACAATTTTATACATATCAGTAACTATGACATTAACTTCATAGATTATTTTTCCCCCAACATACTCTGATGGTTAATATAACTCTCTACAGGGCCACTAAATAGATTAAACCCTAGAAGTAAAACCAGCctcaagaaaaataaaaataaagtccaGTTAAGCCGTAACAAGTGAGgtctttaaaatatatactaGACAAGTGGTTTCCAGACTTTAGGGGTCCCAAGAACAACCTGATGGGTCACCAAATTATTAAAAGTGCcagaaagaaagatagaaaaaaaaaaaaattgtatgtaAAGTTTTCTCATTGTTTTCTGGCTTCTCCACAATTTCTGCTTCATTCCTGTGAAATACTGAATACTTTTTATTTTGGGGGCCTCTAAAAATCcttcaaatatataaatttgGTTCAACTACTGTGTCAATTAGTCAGCTTTAGCTGAGCTGCTATGCACATTTTTTACAGAGCAAGGCTAGATGTTtccctctgtttccagtctCTATGCTATTCTAAcataagctaaccagctgatgGGCACAGCTACATATTTTCCAAGAACCTAATATTCTTTAAAGTGCCAataaggttgggaaccactgtaaACTAAGATCTTTTGGAGGAGAAACCCCATTTAAGCATGAAGAATTGGAGTACAAGAAGTGATTAACGCATTTTGAGAATTATTTTGCTGCATGTTAAGAGTATTACTCATTAAATTGTGCCTCTTTTATTTTGGACTGAAATCCTTTACCATGTAGTGCAACCCAGGTGACAGGAGCTTCATAAAAGAAACATTTCACAGTGAAGATTTATGTTCTTACAACGAACATCAGAAAAATGCCCAAAGAGTGACGTCCCAACCCCACAACAGCAGCAGACAGAACAGTGCAATTAACTCGACTCTCTATCATTCCAAAAGTTACGTTAGAAAACAAGTGCTGAttaggcagacacacacacacacacacacacacacacacacacacacacacacacacacacacctcatttaaaatatttgaaacTCTGAAGTCCAGTTCTATAAACTCAACTTTCCAATGGAACTCCACTAGCTCTACCAGTCTAAGTTCATTGGTCCCAGAGGCACATAAGCGTGGCTAAAAGCTTAAAACAGGACAGTAAGGAGCGGGGAAATGAAAAGATTAGTTAAGTATCTTCCATAAttgcaaataataaaaaaaaatgtctttttacttgccatttgattttttttttttttttaaatagatccTGCTATTTTGGTCACAAAAACAAACTTCAGCTAAGCCGGTAGCCAATAAAATTAACAGTTGAAGCAGTTGCCAGAATCTGCAATTGTAGCAAGGAGAAATATCAAAACCTGGTTACAATAGTCTTCCTGATCTACCTAAATCCCAAATATATTAGTTTTACCACAGAGGAACATGGTGCCAAGACATTTAGTGAATCTCAAGCCCTTTTCGCACACTTTTGTCACACACTTGTCACCATGTCTTTTTTGATACTTCCACTAGCAGTCACCAAAGTCATAAAGTTTCTTATGTGCAGGGAAATGTCAAACAATTATTTAGGATTTCAATTTTCAGGATGAAATCAAATCTCAAGttaatgaaaacattttggaatatttttaaAGCCATGTTTCCTTAAGGAAATCCTGATTAGAAATTTGCGAAGCCTGGGCAATTTCTCTGTAAAAGTCACAACATTTTCACGGAACATCGACTCCAATCGACTCAAAGTGcgtgtgtgaaaggggcttaGCTTACACTAAAAGCATTTAAATCAAacagattaaacaaaaacaactgatGCCCTGATGTAGTAAAAACCCGCACGCCTGGCAATCTCTAGAGATCAAAACATTGGTTTGCTGTATTGTCACCCAGGTCTGAGAGGACTGGAACATCAGTGACTACAATCAGGGTTGCGTTGTGCTATTCTTTTGTCTTAGAGTTTCTTCTGTGAGCAGCACTAGGGCCCACCTCCCTCGTCTTCTTGTTCCTCCATGTTTTTGCGCGCCATCCTCTCTCTCCGCTCTGCCAGCCGATGACATCGAGGACAGTCTTTACCTGTCCGGAAGCAGCTGCGATGGTAACAGGCATTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU130032 True 2554 lncRNA 0.38 2 18749120 18751861

Neighbor

gene id symbol gene type direction distance location
LOC120565156 NA coding upstream 15210 18715754 ~ 18733910 (+)
LOC120565635 LOC103364550,LOC102304031,LOC101475589 coding upstream 36655 18701894 ~ 18712465 (+)
LOC120565634 NA coding upstream 47753 18689219 ~ 18701367 (+)
LOC120565951 NA coding upstream 63372 18684198 ~ 18685748 (+)
LOC120565952 NA coding upstream 65723 18682070 ~ 18683397 (+)
LOC120566166 pfn2,LOC102788235,LOC101065608 coding downstream 96376 18848237 ~ 18857894 (+)
LOC120565637 ankub1 coding downstream 160026 18911887 ~ 18917474 (+)
ppp1r2 ppp1r2 coding downstream 168277 18920138 ~ 18945814 (+)
LOC120565155 acap2 coding downstream 198339 18950200 ~ 19004281 (+)
htr2b htr2b coding downstream 292149 19044010 ~ 19051968 (+)
G96398 NA non-coding upstream 4263 18744516 ~ 18744857 (+)
G96372 NA non-coding upstream 89239 18659642 ~ 18659881 (+)
G96361 NA non-coding upstream 127778 18619558 ~ 18621342 (+)
G96353 NA non-coding upstream 135860 18613029 ~ 18613260 (+)
G96341 NA non-coding upstream 162155 18586628 ~ 18586965 (+)
G96417 NA non-coding downstream 30333 18782194 ~ 18859921 (+)
G96438 psmd1,LOC107550672,LOC106613492 non-coding downstream 272422 19024283 ~ 19029464 (+)
G96445 psmd1 non-coding downstream 304480 19056341 ~ 19057812 (+)
G96455 NA non-coding downstream 527608 19279469 ~ 19287673 (+)
G96488 NA non-coding downstream 579831 19331692 ~ 19387203 (+)
nmur1a LOC103368681,LOC104952433 other upstream 84007 18646703 ~ 18665113 (+)
nppc nppc,LOC104932751,LOC103372810 other upstream 889709 17855631 ~ 17859411 (+)
kdm4b kdm4b,LOC104945107,LOC108234360,LOC108412081 other upstream 2372671 16320494 ~ 16376449 (+)
kcnn1b LOC104945110,LOC103355562 other upstream 2448120 16289823 ~ 16301000 (+)
LOC120564959 LOC104946909,LOC103360792,LOC102294988,LOC101486556,LOC102197099 other upstream 3116308 15523929 ~ 15632812 (+)
G96418 tsc22d2 other downstream 30739 18782600 ~ 18785636 (+)
G96513 NA other downstream 778906 19530767 ~ 19531677 (+)
prkacba prkacb other downstream 1797138 20548999 ~ 20564824 (+)
LOC120565275 ctxn1,LOC108166259,LOC106954365,LOC103138526,LOC104947303,LOC105353898 other downstream 2659475 21411336 ~ 21441558 (+)
lsm7 lsm7,LOC102793261 other downstream 2803033 21554894 ~ 21557731 (+)

Expression


Co-expression Network