G96418 (tsc22d2)


Basic Information

Item Value
gene id G96418
gene name tsc22d2
gene type unknown
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 18782600 ~ 18785636 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU130059
TTCTCTTAATAAAACAGTAATTTATTTTTGACTGAAAACTAAAATTGTCTGAACAGCACATTACAAGGGCATTGTTAAGATATTTTCTCCCAGGCTCAGTGATTACTTTCATACTGTACACTTGGCATGTACACATCTCCTTCAAATGAAAGAACAGAAAGAAATGAGAAAAGAAATAAGCCtgtttgcaaagaaaaaagaaaaaaggaaatcaaAGAGACCATCCTGTAGACAGATGACTGATTGTACAATTACCAAGCATTTTGGTTTGGGTCTAAGCCACAGAGAAAGAAACCAAATCGCCCAACAACCGCAGACGATGGCACAGGAGGCACAAAAGACGTGACAGTACAGGACATCCCATAATATGCTCACACACAACCGACTGGGATCCAGCTTTAAAGTGTGAAAGGTTTTATAGTTTCCATTGTTTTTTGcagatatttattttattttataagtgTTGGTACACTACAATCAAAATCGAAATGCTGCATtcattaaatacattaaaatctgCAATGTAACAAAATCTTTTCTCCGTTATGAAATTCAACAGCATTtacatggggaaaaaaaaatacatgggGCTCCTTTTCTGACTATTGTTTTGTGCTTGAGGCCCTTCCCTCCATCTGACACAAACACCTTgtcattcttttcttttatattcTTACCTCAACTACTTACTCCACCCTCTGCCCATTCTTCTCTTTCTCGTTCATAAATCCTTTCACAGACTGACAACTTCACAAAAAGTAAATGGTGGATAAAAACATGAGGTAAGAAAGTGGTTTGATTATAGATCATGCAGAACATGCAAAACAGCGCAAAAATATAGGGAAAGTGagagcaggaaaaaaaataagtgtgcaTTTAAAAATGGGGGAAGAGACTTACACAGCTTTGCATCTTTGGTTATAAAGTAGGTCAAACAATTTTCACAGCTTTTTATTCCCCTGACCAAACCCCCAAATTAATTTCATCTTTTTTGTTGTGACAAAGAAAGTAAATTTAATAGTTTTCCTTATCCAAACATCCCATCTTAACAACAGGTGTTCCCCTGTACAAACCCTCCATGCTCTTAATACTTTACACTTTACAAAATATACATTCAACCTGGATTTCACCTAATGTAAGCTCGGCTTTAGTGTTAGCACTAtttcatgaaatacattttctattatGGAACTTATTGCCTACTTGTTGCAAGAGAGACTACCAAATGTAATACCTGACAGATTCTAAAATACCAAAAGACCAAAGAGaaaaggttttctttttttttgtttgttttaagtttCTCCATGACATTGTTCATTTACATTATGAAAATAGCagccctgaaataaataaatgaaaatactaAAACTGAACTaatgaaaaaaagtattatGATTCATGTCAAAGTACGGTGGCTCTGAGAAAACAACACAAGCTTTTGTTGCAGCATATAACAACCCGAGGCTCTCGACTCGCTCCACTCAAGCCGAGACGCCCGCCGGCTTCCTCCTCCACTCAGGGACGACCAATCCTTTCCCCCCCTCCCTCGGCTCTCTGGCCTCTTCCAGCCCTGGAGTGATGTTGGGTTGGGGGATACTGGGAGGACAGTCCCTGCTGGATATCACAGGACCCTCATCACGTCACAGGCCCCTCACAGGGTTGCACCGCCCTCTTCCACCACTCGTTGCCCCAACAAATCAATCTCGCTGTGCCCTTTGACCCCCGTCCTCCTGCACAAGAACAGCATGCGGTTTTATGGTGTGCACCGGCTCCCCCCTGCCCCTCCTTTTTCAGCTTTCTTGCAGCCACGGGACAGAATAAGACTTTTTGAGGGGTGGTAAATGTCTTAATAATGTAAAGCCTGGTGGCGGTAACGTGCACACATCGAAGCATGGCTCTTGGTGGCAAACGCAGATGTCGCTGTTGTTGAGGTTTCCTCAAATGGAGCATATTGAACGCAGAGCAGGGCCTTTTGCTTTATGAGGGGGACAGTAGCAGTTGTTCCTGCCCGTGGGAGGTTTGTGTTTGAGCATGTGTACTGAGGGAACGGGGATCACGCAGAGGTGATGTTAGGCTGTTGAGGGACGCTCTGACCCCCCTCGTGGTGAGCCAAGGCGGgggtgttggtggtggtggtgttgttgttgttgttgttgtttgtgacGAGCGGGTATTGCTGTTGCAGCGTCGGCGATGTGCTGCTGCCCTGGTTGAGCTGACTGGACAGCTGGCCGAGCTGATCCGTGTTGGCCAGGGACTTCAGCACGGCATTCTCGCGCTCCAACACCGAGTTCCTCTCGTACAGCTCCTTGATCTGCTCCTTCAACACCTCCACCTCCTCACGGACAGCATACATCAGGTGGCTCTTCACCAAGTCCCTTGCTCAATCTTGTTATCGATGGCGACAACACTGGCG

Function

symbol description
tsc22d2 Predicted to act upstream of or within regulation of transcription by RNA polymerase II. Is expressed in paraxial mesoderm; presumptive segmental plate; and somite. Orthologous to human TSC22D2 (TSC22 domain family member 2).

NR:

description
PREDICTED: TSC22 domain family protein 2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU130059 True 2419 TUCP 0.43 2 18782600 18785636

Neighbor

gene id symbol gene type direction distance location
LOC120565156 NA coding upstream 48690 18715754 ~ 18733910 (+)
LOC120565635 LOC103364550,LOC102304031,LOC101475589 coding upstream 70135 18701894 ~ 18712465 (+)
LOC120565634 NA coding upstream 81233 18689219 ~ 18701367 (+)
LOC120565951 NA coding upstream 96852 18684198 ~ 18685748 (+)
LOC120565952 NA coding upstream 99203 18682070 ~ 18683397 (+)
LOC120566166 pfn2,LOC102788235,LOC101065608 coding downstream 62601 18848237 ~ 18857894 (+)
LOC120565637 ankub1 coding downstream 126251 18911887 ~ 18917474 (+)
ppp1r2 ppp1r2 coding downstream 134502 18920138 ~ 18945814 (+)
LOC120565155 acap2 coding downstream 164564 18950200 ~ 19004281 (+)
htr2b htr2b coding downstream 258374 19044010 ~ 19051968 (+)
G96399 NA non-coding upstream 30739 18749120 ~ 18751861 (+)
G96398 NA non-coding upstream 37743 18744516 ~ 18744857 (+)
G96372 NA non-coding upstream 122719 18659642 ~ 18659881 (+)
G96361 NA non-coding upstream 161258 18619558 ~ 18621342 (+)
G96353 NA non-coding upstream 169340 18613029 ~ 18613260 (+)
G96438 psmd1,LOC107550672,LOC106613492 non-coding downstream 238647 19024283 ~ 19029464 (+)
G96445 psmd1 non-coding downstream 270705 19056341 ~ 19057812 (+)
G96455 NA non-coding downstream 493833 19279469 ~ 19287673 (+)
G96488 NA non-coding downstream 546056 19331692 ~ 19387203 (+)
G96489 NA non-coding downstream 548540 19334176 ~ 19334915 (+)
nmur1a LOC103368681,LOC104952433 other upstream 117487 18646703 ~ 18665113 (+)
nppc nppc,LOC104932751,LOC103372810 other upstream 923189 17855631 ~ 17859411 (+)
kdm4b kdm4b,LOC104945107,LOC108234360,LOC108412081 other upstream 2406151 16320494 ~ 16376449 (+)
kcnn1b LOC104945110,LOC103355562 other upstream 2481600 16289823 ~ 16301000 (+)
LOC120564959 LOC104946909,LOC103360792,LOC102294988,LOC101486556,LOC102197099 other upstream 3149788 15523929 ~ 15632812 (+)
G96513 NA other downstream 745131 19530767 ~ 19531677 (+)
prkacba prkacb other downstream 1763363 20548999 ~ 20564824 (+)
LOC120565275 ctxn1,LOC108166259,LOC106954365,LOC103138526,LOC104947303,LOC105353898 other downstream 2625700 21411336 ~ 21441558 (+)
lsm7 lsm7,LOC102793261 other downstream 2769258 21554894 ~ 21557731 (+)
G97093 NA other downstream 2905261 21690897 ~ 21782000 (+)

Expression


Co-expression Network