G96438 (psmd1,LOC107550672,LOC106613492)


Basic Information

Item Value
gene id G96438
gene name psmd1,LOC107550672,LOC106613492
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 19024283 ~ 19029464 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU130082
CGGCAGGTCTCGGGCATGTTGAGGACTTTGAGCTGAGCCGGCATTGCTCTGGCCGGGTTCTCCAGGAGCTGGAAATTTGGCTCagcctctttcttcttctctttctccttttcttcatccttcttctccttctccttctccttctcctgtttctccttctctttctccgcCTCCTGGACCTCCACTtccatcttctcctcctccttttctttcttttccttctccttcttcttggcTTTGGCTGTGATGGAGAGAACAGCAGTGGATACcttctccttctccttctctttgGGAACCTCCAGAGCTGGTGGGTAGGCGAAGGTGGAGGGCTTACAGTTAGAACGATACTGAACCTTGGGCATCTTGAGGTCCTTGTTGAGGCCAATTATAGCGGTTGGTGTGAAGGCCAATGACAGGAAGTGGGAAAGAgggaaccagaaccagaactgAGTGAAGACCAGCAGGCCGACCAATGTTGGCATGTGAGTGTGACCCGTCCTGGACTGTAGAGAGATGGTCACATTACGTCCAC

Function

symbol description
psmd1 Predicted to enable enzyme regulator activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within regulation of protein catabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of proteasome regulatory particle, base subcomplex. Predicted to be active in nucleus and proteasome storage granule. Orthologous to human PSMD1 (proteasome 26S subunit, non-ATPase 1).

NR:

description
PREDICTED: 26S proteasome non-ATPase regulatory subunit 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU130082 True 532 lncRNA 0.52 4 19024283 19029464

Neighbor

gene id symbol gene type direction distance location
LOC120565155 acap2 coding upstream 20002 18950200 ~ 19004281 (+)
ppp1r2 ppp1r2 coding upstream 78469 18920138 ~ 18945814 (+)
LOC120565637 ankub1 coding upstream 106809 18911887 ~ 18917474 (+)
LOC120566166 pfn2,LOC102788235,LOC101065608 coding upstream 166389 18848237 ~ 18857894 (+)
LOC120565156 NA coding upstream 290373 18715754 ~ 18733910 (+)
htr2b htr2b coding downstream 14546 19044010 ~ 19051968 (+)
fam43a fam43a,LOC102785697 coding downstream 309402 19338866 ~ 19341056 (+)
LOC120565772 srsf11,LOC103363396 coding downstream 491478 19520942 ~ 19529494 (+)
cth cth coding downstream 545391 19574855 ~ 19586645 (+)
adgrl2a adgrl2,LOC106923620 coding downstream 1126946 20156410 ~ 20256594 (+)
G96417 NA non-coding upstream 164362 18782194 ~ 18859921 (+)
G96399 NA non-coding upstream 272422 18749120 ~ 18751861 (+)
G96398 NA non-coding upstream 279426 18744516 ~ 18744857 (+)
G96372 NA non-coding upstream 364402 18659642 ~ 18659881 (+)
G96361 NA non-coding upstream 402941 18619558 ~ 18621342 (+)
G96445 psmd1 non-coding downstream 26877 19056341 ~ 19057812 (+)
G96455 NA non-coding downstream 250005 19279469 ~ 19287673 (+)
G96488 NA non-coding downstream 302228 19331692 ~ 19387203 (+)
G96489 NA non-coding downstream 304712 19334176 ~ 19334915 (+)
LOC120565771 NA non-coding downstream 357768 19387232 ~ 19511208 (+)
G96418 tsc22d2 other upstream 238647 18782600 ~ 18785636 (+)
nmur1a LOC103368681,LOC104952433 other upstream 359170 18646703 ~ 18665113 (+)
nppc nppc,LOC104932751,LOC103372810 other upstream 1164872 17855631 ~ 17859411 (+)
kdm4b kdm4b,LOC104945107,LOC108234360,LOC108412081 other upstream 2647834 16320494 ~ 16376449 (+)
kcnn1b LOC104945110,LOC103355562 other upstream 2723283 16289823 ~ 16301000 (+)
G96513 NA other downstream 501303 19530767 ~ 19531677 (+)
prkacba prkacb other downstream 1519535 20548999 ~ 20564824 (+)
LOC120565275 ctxn1,LOC108166259,LOC106954365,LOC103138526,LOC104947303,LOC105353898 other downstream 2381872 21411336 ~ 21441558 (+)
lsm7 lsm7,LOC102793261 other downstream 2525430 21554894 ~ 21557731 (+)
G97093 NA other downstream 2661433 21690897 ~ 21782000 (+)

Expression


Co-expression Network