G96445 (psmd1)


Basic Information

Item Value
gene id G96445
gene name psmd1
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 19056341 ~ 19057812 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU130094
CCTGTCTTTGTCTGGTGTGGGCACAGTGCCTGTATTTGTAGAGCCAGGGACGGCAGGGATAGGTGTTCCAACAGTGCGCAAGTTCTGgatgacagaggagaggaacTGCTGGCTGGCACTTTCATACAGGTCAAAGCAGATCTGATAGGCCATCAACAGGTTATCCTCTTTCACTAGTTTCTCCAGGATGTCACTCACAGcctgtgggtcatccaggaatATCAGGCAcGACAGACATTGATGAAATCTGGCTTGTCCAAGTTCATGTAGAGCTTGACCAGCACCCGCAGCACCTCGTTGCGAAACTTCTTGTTCTGCATCAGAGACATGCACACCTTCAGGCTGTAGGCAAGGAGGCCACTCACATCAGT

Function

symbol description
psmd1 Predicted to enable enzyme regulator activity. Predicted to be involved in proteasome-mediated ubiquitin-dependent protein catabolic process. Predicted to act upstream of or within regulation of protein catabolic process. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of proteasome regulatory particle, base subcomplex. Predicted to be active in nucleus and proteasome storage granule. Orthologous to human PSMD1 (proteasome 26S subunit, non-ATPase 1).

NR:

description
26S proteasome non-ATPase regulatory subunit 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU130094 True 371 lncRNA 0.51 2 19056341 19057812

Neighbor

gene id symbol gene type direction distance location
htr2b htr2b coding upstream 4373 19044010 ~ 19051968 (+)
LOC120565155 acap2 coding upstream 52060 18950200 ~ 19004281 (+)
ppp1r2 ppp1r2 coding upstream 110527 18920138 ~ 18945814 (+)
LOC120565637 ankub1 coding upstream 138867 18911887 ~ 18917474 (+)
LOC120566166 pfn2,LOC102788235,LOC101065608 coding upstream 198447 18848237 ~ 18857894 (+)
fam43a fam43a,LOC102785697 coding downstream 281054 19338866 ~ 19341056 (+)
LOC120565772 srsf11,LOC103363396 coding downstream 463130 19520942 ~ 19529494 (+)
cth cth coding downstream 517043 19574855 ~ 19586645 (+)
adgrl2a adgrl2,LOC106923620 coding downstream 1098598 20156410 ~ 20256594 (+)
samd13 samd13,LOC103130842 coding downstream 1507163 20564975 ~ 20568112 (+)
G96438 psmd1,LOC107550672,LOC106613492 non-coding upstream 26877 19024283 ~ 19029464 (+)
G96417 NA non-coding upstream 196420 18782194 ~ 18859921 (+)
G96399 NA non-coding upstream 304480 18749120 ~ 18751861 (+)
G96398 NA non-coding upstream 311484 18744516 ~ 18744857 (+)
G96372 NA non-coding upstream 396460 18659642 ~ 18659881 (+)
G96455 NA non-coding downstream 221657 19279469 ~ 19287673 (+)
G96488 NA non-coding downstream 273880 19331692 ~ 19387203 (+)
G96489 NA non-coding downstream 276364 19334176 ~ 19334915 (+)
LOC120565771 NA non-coding downstream 329420 19387232 ~ 19511208 (+)
G96613 ptger3 non-coding downstream 619356 19677168 ~ 19683076 (+)
G96418 tsc22d2 other upstream 270705 18782600 ~ 18785636 (+)
nmur1a LOC103368681,LOC104952433 other upstream 391228 18646703 ~ 18665113 (+)
nppc nppc,LOC104932751,LOC103372810 other upstream 1196930 17855631 ~ 17859411 (+)
kdm4b kdm4b,LOC104945107,LOC108234360,LOC108412081 other upstream 2679892 16320494 ~ 16376449 (+)
kcnn1b LOC104945110,LOC103355562 other upstream 2755341 16289823 ~ 16301000 (+)
G96513 NA other downstream 472955 19530767 ~ 19531677 (+)
prkacba prkacb other downstream 1491187 20548999 ~ 20564824 (+)
LOC120565275 ctxn1,LOC108166259,LOC106954365,LOC103138526,LOC104947303,LOC105353898 other downstream 2353524 21411336 ~ 21441558 (+)
lsm7 lsm7,LOC102793261 other downstream 2497082 21554894 ~ 21557731 (+)
G97093 NA other downstream 2633085 21690897 ~ 21782000 (+)

Expression


Co-expression Network