G96488


Basic Information

Item Value
gene id G96488
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 19331692 ~ 19387203 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU130147
TATAATCTTAGTAACATTAATCACAACTGTATATGGATAAAAGCCATATCAAACATACAGTAATGTATATGGTTAATGTAGACTTTGTAATGTGTCTTTTGAAACACCTTCAAAATACAAATTGAAAATGTCCTGTTCAATGTGTAATCAAATTCCCATCCTCTGAATGTTGAGTCCATTTCTGAACACTGTGGGGAGATCGGGTGTACAACTGGTGATCCAGTTTATGGAATGCATTGCACCAATATGATTTTCTACCCAGAGCTGTACATGATTATCATTtgttaatataataatagaGACAGTCTGACCTTTCCATACTCGCAGGATTAAAAGGGCCTACATCTACCTACAGATACTGATCAGCATAAATTCCTTTGGAATCACATGTGAACTGCAGTGGAGTGGTTTTCCATTCCTGCTGAAATGATCTGTAATTAAAAATGCTTTGATTTCAGATCATCGTCAGGCCTCCAGATGCTTGGTAAGACGGCGTACTTTCTCCTTCTTGTTGTGGTTGCCGTGTTTTTTCCAGGGTTTTCCAGGGCCGACGGGTCCGCTGCCTGGCTTGTAGCCCATGACCGACTGAACCCCCTTAGAGAGCGCCCGCACATTCTCCTGATGGAAGAAGTTCTTGTCAACCACATTTTCAATTCTGCggattttctgtttgtttgttgctgtggaggaggaggaggaggaggagaggtcaCAGTCTCTATTCAGGAACTTGTTGTGCTGCGGCTGGAACATGTGACCTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU130147 True 762 lncRNA 0.42 4 19331692 19387203

Neighbor

gene id symbol gene type direction distance location
htr2b htr2b coding upstream 279724 19044010 ~ 19051968 (+)
LOC120565155 acap2 coding upstream 327411 18950200 ~ 19004281 (+)
ppp1r2 ppp1r2 coding upstream 385878 18920138 ~ 18945814 (+)
LOC120565637 ankub1 coding upstream 414218 18911887 ~ 18917474 (+)
LOC120566166 pfn2,LOC102788235,LOC101065608 coding upstream 473798 18848237 ~ 18857894 (+)
LOC120565772 srsf11,LOC103363396 coding downstream 133739 19520942 ~ 19529494 (+)
cth cth coding downstream 187652 19574855 ~ 19586645 (+)
adgrl2a adgrl2,LOC106923620 coding downstream 769207 20156410 ~ 20256594 (+)
samd13 samd13,LOC103130842 coding downstream 1177772 20564975 ~ 20568112 (+)
dnase2b dnase2b,LOC108234386,LOC107392715 coding downstream 1189320 20576523 ~ 20582264 (+)
G96455 NA non-coding upstream 44019 19279469 ~ 19287673 (+)
G96445 psmd1 non-coding upstream 273880 19056341 ~ 19057812 (+)
G96438 psmd1,LOC107550672,LOC106613492 non-coding upstream 302228 19024283 ~ 19029464 (+)
G96417 NA non-coding upstream 471771 18782194 ~ 18859921 (+)
G96399 NA non-coding upstream 579831 18749120 ~ 18751861 (+)
LOC120565771 NA non-coding downstream 29 19387232 ~ 19511208 (+)
G96613 ptger3 non-coding downstream 289965 19677168 ~ 19683076 (+)
G96610 NA non-coding downstream 296947 19684150 ~ 19685085 (+)
G96616 NA non-coding downstream 363917 19751120 ~ 19751372 (+)
G96648 adgrl4 non-coding downstream 613625 20000828 ~ 20002125 (+)
G96418 tsc22d2 other upstream 546056 18782600 ~ 18785636 (+)
nmur1a LOC103368681,LOC104952433 other upstream 666579 18646703 ~ 18665113 (+)
nppc nppc,LOC104932751,LOC103372810 other upstream 1472281 17855631 ~ 17859411 (+)
kdm4b kdm4b,LOC104945107,LOC108234360,LOC108412081 other upstream 2955243 16320494 ~ 16376449 (+)
kcnn1b LOC104945110,LOC103355562 other upstream 3030692 16289823 ~ 16301000 (+)
G96513 NA other downstream 143564 19530767 ~ 19531677 (+)
prkacba prkacb other downstream 1161796 20548999 ~ 20564824 (+)
LOC120565275 ctxn1,LOC108166259,LOC106954365,LOC103138526,LOC104947303,LOC105353898 other downstream 2024133 21411336 ~ 21441558 (+)
lsm7 lsm7,LOC102793261 other downstream 2167691 21554894 ~ 21557731 (+)
G97093 NA other downstream 2303694 21690897 ~ 21782000 (+)

Expression


Co-expression Network