XLOC_004678 (arhgap17a)


Basic Information

Item Value
gene id XLOC_004678
gene name arhgap17a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 20412293 ~ 20482061 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009266
CAATAAGTGTCTGCATGGTCATCCCAGCTGGTAATACGAGTGGACACTGAACTCTACGTAGCTTCATTTGACTGCGTCTCAAAGCCTTTACAGCTGCCTACACAGACAGTATCTTTGAGCACAACCGACGACTGTCAGTGCTGTTTATATAGTCATCGCACTATGTTCTGGGACAGCCCACAGTTTTCACGTTCATGCCATCATGATCAGCCCGGAGCTGCGCCGATGAGAGCActgaaacacactcacacacacacacacacgcacacgcacacaaagtGCCCGACTCGGATGGAGTGATCAGCCCGCTGCCATGCACTCTTTCCCGTAGTTGTCACGGGCTGCTGGCATACGTGGAAAAACACTCACTCCCGCTTATGAGACCAGTTGCAACACGGAATGACATGAAACGAGCACCGCTACTCACCGGAGCTAACTTTTTTCCACACTGCTGTTTTTTTCTCTCCCGATTCGGCTAGTTTTCTAGCTGCCTGAGCTAACCGTAAACCGGgctgttttaatgtaattagCCACACGACTTCACTATCGTGCACAAGGATCTTTCGGCTCATGAGGAATCGACGAACACACGTCTTTACTGGGTTTTGAGGCCGACGACACTAAAATGAAGAAACAGTTTAATCGGATGAGACAGCTCGCCAATCAAACAGTTGGCAGagCGGAGAAAACAGAAGTCCTCAGTGATGACCTGTTACAGATTGAACGCCGTATGGAGTTGGTGCGGGTCGTTTCGCACAACACGCACAAAAAAATGGCTGTGTGTTTGCAGGGGCAGATTGGCACTGATGCTGAGAAGAGACATAAAAAGCTTCCACTGACAGCGCTGTCACAGGCCATGCAGGACGGTGGGAACCAGCTGGGGGAGGAGTCTCTGATTGGGAAGATGATGGAGATGTGTGGAGATGCGGAGAACAGACTGGCCTCAGAGCTGATGCAGCATGAGATGAACATCGAGAAGGAAATCTTAGACCCCCTTAATCAGCTAGCAGAGTTTGACATTCCTAACATCCTGAAACAGAGGCGGCAGTTAGCCAAGCTGGTTCTGGACTATGATTCTGCCCGGGCAAGGTGGTTGCAGGCGACCAAGTCAATAATCTCAGgaacaaacacacaagcactgACAGCCAAAGCAGACTCGCTTAAAGAAGAAGTTGACGAAGCTATGAACAAAATGGAGCTGTGTAAGgatCAGCTTTCAGCAGATATGTACAACTTCTTCTCAAAGGAGGCAGACTATGCCCGCTACTATGTAATGTTATTAGAGGCGCAGGCGGATTACCACAGAAAATCTCTCACCTTGCTCGAGAGCGTCCTGCCAAACATTCAGGCTCAACAAGACTCATGGAGTGAGAAGCCAGCGTTTGGGACAGCTCTGGACGAGCACCTGAAGCGCAGCAGCAGAGAGATTGCTCTGCCCATAGAGGCATGTGTCATGATGCTACTGGAGACTGGAATGAAAGAGGAGGGTCTGTTCCGCATCGCAGCAGGAGCCTCTAAACTGAAGAAGCTGAAGGCTGCTCTGGATTGCTCCACCTCACAGCTGGAGGAGTTTTACTCAGATCCACATGCTGTTGCTGGGGCACTGAAGTCGTATCTCAGAGAGTTGCCTGAACCTTTGATGACTTACCAGCTGTATGATGAATGGATACAGGCCTCCAATGTTCCTGACCCAGACAAACGATTACAAGCTTTGTGGGTTACCTGCGATCAGTTACCAAAAAACAACAAGGCAAACTTCAGATATCTTGTTAAGTTCCTCGCTAAACTTGCACAGGAAAGTGACGTTAACAAGATGACGCCCAGCAACATCGCCATTGTCCTTGGACCCAACTTACTGTGGGCCAAAACTGAGGGGAGCCTAGCAGAAATGGCTGCTGCAACCTCTGTCCATGTGGTTACTATAATCGACCCCATCATCCAGCATGCGGACTGGTTTTTCCCTGAGGATGTGGATTTTAATGTATCCGGCATGTTTTCGATGCCCGCACCCCTGCCAAACAATGTCAATCACCTGACGCCGCCAGATTATGACTCAGGCACCATAGAGAGAAAGAGACCTGGCAGTATGGTTGGTCCAGATGGGGATATGCCCCGAAGAGACAGttcAAAGAGCCGAGACTCTGCATCCACTCCTCCTGCTCAGAGAAATGGCACTGGAGGCTCAGGACAGCTGAGTGTGGGGACCCCTGTGGCGGGATCTACAGGACCCAGTCCTCACATGACACGCAGAGGTACAAAGAAGCCTGCTCCAGCTCCACCTAAACCAGCCAACCCTCCACCAATCCAACCAGCCAATCAGCCCGTTCCACAACAGACCCAATCAGGCACCCCTCAGTCCTTCAGCCCGTCCCCTAGACCGCTTTCCAGTTACTCTCCAACCAATCTGAGCCCCACACAGACCCAGGCCCAAACCAACACCACCCCACGCCGCCACTCCAGCAACCAGCCTCCCATTCAGGCACCCAACCACCCACCTCCACAGCCCCCGACCCAAACCACTCCACCTCCCCAAACCGGCATGCTTGGTGACCAAGCTGAAGACCCCTCGCCTCCACATACCCCCACCCCACCGAGCACCCCTCCTCCCACAGCAGTCTTCCAGGACAGTCCTAGTCCCACCGCGCCTCCGGTGTTCCAGTCAGGGTCGCTTCCACGCCCCAGGCCTGTGCCCAAACCACGCAACAGACCCACTGTCCCCCCTCCGCCTCAGCCTCCAGCCATAGGAAGTGACAGCAATGGAATTTGCAGCGCTGCCTTCAAAACAATGGAATCGGGGATGACATTTAAAGCAGTGGGTCGAGCTCTCATTCCGGACATCGCAATTGAGAAGCCTGTAACTCACCTGAAGGACGCAGACCTCGACACAGAGAGCACCGTACTGTAA
>TCONS_00009265
CAATAAGTGTCTGCATGGTCATCCCAGCTGGTAATACGAGTGGACACTGAACTCTACGTAGCTTCATTTGACTGCGTCTCAAAGCCTTTACAGCTGCCTACACAGACAGTATCTTTGAGCACAACCGACGACTGTCAGTGCTGTTTATATAGTCATCGCACTATGTTCTGGGACAGCCCACAGTTTTCACGTTCATGCCATCATGATCAGCCCGGAGCTGCGCCGATGAGAGCActgaaacacactcacacacacacacacacgcacacgcacacaaagtGCCCGACTCGGATGGAGTGATCAGCCCGCTGCCATGCACTCTTTCCCGTAGTTGTCACGGGCTGCTGGCATACGTGGAAAAACACTCACTCCCGCTTATGAGACCAGTTGCAACACGGAATGACATGAAACGAGCACCGCTACTCACCGGAGCTAACTTTTTTCCACACTGCTGTTTTTTTCTCTCCCGATTCGGCTAGTTTTCTAGCTGCCTGAGCTAACCGTAAACCGGgctgttttaatgtaattagCCACACGACTTCACTATCGTGCACAAGGATCTTTCGGCTCATGAGGAATCGACGAACACACGTCTTTACTGGGTTTTGAGGCCGACGACACTAAAATGAAGAAACAGTTTAATCGGATGAGACAGCTCGCCAATCAAACAGTTGGCAGagCGGAGAAAACAGAAGTCCTCAGTGATGACCTGTTACAGATTGAACGCCGTATGGAGTTGGTGCGGGTCGTTTCGCACAACACGCACAAAAAAATGGCTGTGTGTTTGCAGGGGCAGATTGGCACTGATGCTGAGAAGAGACATAAAAAGCTTCCACTGACAGCGCTGTCACAGGCCATGCAGGACGGTGGGAACCAGCTGGGGGAGGAGTCTCTGATTGGGAAGATGATGGAGATGTGTGGAGATGCGGAGAACAGACTGGCCTCAGAGCTGATGCAGCATGAGATGAACATCGAGAAGGAAATCTTAGACCCCCTTAATCAGCTAGCAGAGTTTGACATTCCTAACATCCTGAAACAGAGGCGGCAGTTAGCCAAGCTGGTTCTGGACTATGATTCTGCCCGGGCAAGGTGGTTGCAGGCGACCAAGTCAATAATCTCAGgaacaaacacacaagcactgACAGCCAAAGCAGACTCGCTTAAAGAAGAAGTTGACGAAGCTATGAACAAAATGGAGCTGTGTAAGgatCAGCTTTCAGCAGATATGTACAACTTCTTCTCAAAGGAGGCAGACTATGCCCGCTACTATGTAATGTTATTAGAGGCGCAGGCGGATTACCACAGAAAATCTCTCACCTTGCTCGAGAGCGTCCTGCCAAACATTCAGGCTCAACAAGACTCATGGAGTGAGAAGCCAGCGTTTGGGACAGCTCTGGACGAGCACCTGAAGCGCAGCAGCAGAGAGATTGCTCTGCCCATAGAGGCATGTGTCATGATGCTACTGGAGACTGGAATGAAAGAGGAGGGTCTGTTCCGCATCGCAGCAGGAGCCTCTAAACTGAAGAAGCTGAAGGCTGCTCTGGATTGCTCCACCTCACAGCTGGAGGAGTTTTACTCAGATCCACATGCTGTTGCTGGGGCACTGAAGTCGTATCTCAGAGAGTTGCCTGAACCTTTGATGACTTACCAGCTGTATGATGAATGGATACAGGCCTCCAATGTTCCTGACCCAGACAAACGATTACAAGCTTTGTGGGTTACCTGCGATCAGTTACCAAAAAACAACAAGGCAAACTTCAGATATCTTGTTAAGTTCCTCGCTAAACTTGCACAGGAAAGTGACGTTAACAAGATGACGCCCAGCAACATCGCCATTGTCCTTGGACCCAACTTACTGTGGGCCAAAACTGAGGGGAGCCTAGCAGAAATGGCTGCTGCAACCTCTGTCCATGTGGTTACTATAATCGACCCCATCATCCAGCATGCGGACTGGTTTTTCCCTGAGGATGTGGATTTTAATGTATCCGGCATGTTTTCGATGCCCGCACCCCTGCCAAACAATGTCAATCACCTGACGCCGCCAGATTATGACTCAGGCACCATAGAGAGAAAGAGACCTGGCAGTATGGTTGGTCCAGATGGGGATATGCCCCGAAGAGACAGCTCTGCTAATAAATTAATGGACCACAATCCTCGTAGAGGCAATACTGTACCTAGAAAGCAGCACGCTTCGCCTGCCTTCCAGCCTCCGCTGCCCCCGGTGGAGGCTGCGGGTGGTGCAGGGGGTCAGTCCACAGCTGAACTCCTGCTCCAGCAGCCTGCGCAGGTGGGTCTGGGCTTAGAGAACTGCCAGCCTGGGGTGGCACTGGGGATGGCTGCCCTGGCAGCAGCACAGCAGCTTCTAGCACAGCATACTGAGGAGATCAGttcAAAGAGCCGAGACTCTGCATCCACTCCTCCTGCTCAGAGAAATGGCACTGGAGGCTCAGGACAGCTGAGTGTGGGGACCCCTGTGGCGGGATCTACAGGACCCAGTCCTCACATGACACGCAGAGGTACAAAGAAGCCTGCTCCAGCTCCACCTAAACCAGCCAACCCTCCACCAATCCAACCAGCCAATCAGCCCGTTCCACAACAGACCCAATCAGGCACCCCTCAGTCCTTCAGCCCGTCCCCTAGACCGCTTTCCAGTTACTCTCCAACCAATCTGAGCCCCACACAGACCCAGGCCCAAACCAACACCACCCCACGCCGCCACTCCAGCAACCAGCCTCCCATTCAGGCACCCAACCACCCACCTCCACAGCCCCCGACCCAAACCACTCCACCTCCCCAAACCGGCATGCTTGGTGACCAAGCTGAAGACCCCTCGCCTCCACATACCCCCACCCCACCGAGCACCCCTCCTCCCACAGCAGTCTTCCAGGACAGTCCTAGTCCCACCGCGCCTCCGGTGTTCCAGTCAGGGTCGCTTCCACGCCCCAGGCCTGTGCCCAAACCACGCAACAGACCCACTGTCCCCCCTCCGCCTCAGCCTCCAGCCATAGGAAGTGACAGCAATGGAATTTGCAGCGCTGCCTTCAAAACAATGGAATCGGGGATGACATTTAAAGCAGTGGGTCGAGCTCTCATTCCGGACATCGCAATTGAGAAGCCTGTAACTCACCTGAAGGACGCAGACCTCGACACAGAGAGCACCGTACTGTAA
>TCONS_00009267
acacaaagtGCCCGACTCGGATGGAGTGATCAGCCCGCTGCCATGCACTCTTTCCCGTAGTTGTCACGGGCTGCTGGCATACGTGGAAAAACACTCACTCCCGCTTATGAGACCAGTTGCAACACGGAATGACATGAAACGAGCACCGCTACTCACCGGAGCTAACTTTTTTCCACACTGCTGTTTTTTTCTCTCCCGATTCGGCTAGTTTTCTAGCTGCCTGAGCTAACCGTAAACCGGgctgttttaatgtaattagCCACACGACTTCACTATCGTGCACAAGGATCTTTCGGCTCATGAGGAATCGACGAACACACGTCTTTACTGGGTTTTGAGGCCGACGACACTAAAATGAAGAAACAGTTTAATCGGATGAGACAGCTCGCCAATCAAACAGTTGGCAGagCGGAGAAAACAGAAGTCCTCAGTGATGACCTGTTACAGATTGAACGCCGTATGGAGTTGGTGCGGGTCGTTTCGCACAACACGCACAAAAAAATGGCTGTGTGTTTGCAGGGGCAGATTGGCACTGATGCTGAGAAGAGACATAAAAAGCTTCCACTGACAGCGCTGTCACAGGCCATGCAGGACGGTGGGAACCAGCTGGGGGAGGAGTCTCTGATTGGGAAGATGATGGAGATGTGTGGAGATGCGGAGAACAGACTGGCCTCAGAGCTGATGCAGCATGAGATGAACATCGAGAAGGAAATCTTAGACCCCCTTAATCAGCTAGCAGAGTTTGACATTCCTAACATCCTGAAACAGAGGCGGCAGTTAGCCAAGCTGGTTCTGGACTATGATTCTGCCCGGGCAAGGTGGTTGCAGGCGACCAAGTCAATAATCTCAGgaacaaacacacaagcactgACAGCCAAAGCAGACTCGCTTAAAGAAGAAGTTGACGAAGCTATGAACAAAATGGAGCTGTGTAAGgatCAGCTTTCAGCAGATATGTACAACTTCTTCTCAAAGGAGGCAGACTATGCCCGCTACTATGTAATGTTATTAGAGGCGCAGGCGGATTACCACAGAAAATCTCTCACCTTGCTCGAGAGCGTCCTGCCAAACATTCAGGCTCAACAAGGTGACGACACACATTCTTGATGTTTCTAAGAACCTAAAAATTATATCAGTGAAACCTTTTAGTGAATAATGGGCAAATGTAAAAACACACTGCATGTTTTTGAATTACTGGCGACGTGCACAGTGCTGATAAATAAAGTTGTCATTCACTTTTT

Function

symbol description
arhgap17a Predicted to enable GTPase activator activity. Predicted to be involved in regulation of Rac protein signal transduction and regulation of actin cytoskeleton organization. Predicted to act upstream of or within signal transduction. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Is expressed in several structures, including axis; myotome; nervous system; notochord; and solid lens vesicle. Orthologous to human ARHGAP17 (Rho GTPase activating protein 17).

GO:

id name namespace
GO:0035020 regulation of Rac protein signal transduction biological_process
GO:0032956 regulation of actin cytoskeleton organization biological_process
GO:0007015 actin filament organization biological_process
GO:0017156 calcium-ion regulated exocytosis biological_process
GO:0007165 signal transduction biological_process
GO:0005829 cytosol cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005096 GTPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050417-56 Predicted to enable GTPase activator activity. Predicted to be involved in regulation of Rac protein signal transduction and regulation of actin cytoskeleton organization. Predicted to act upstream of or within signal transduction. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Is expressed in several structures, including axis; myotome; nervous system; notochord; and solid lens vesicle. Orthologous to human ARHGAP17 (Rho GTPase activating protein 17).

Ensembl:

ensembl_id ENSDARG00000020488

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009266 False 2905 mRNA 0.52 19 20412293 20482061
TCONS_00009265 False 3169 mRNA 0.53 20 20412293 20482061
TCONS_00009267 True 1241 mRNA 0.47 9 20412564 20461752

Neighbor

gene id symbol gene type direction distance location
XLOC_004677 hbae5 coding upstream 58752 20342451 ~ 20353541 (+)
XLOC_004676 zgc:163057 coding upstream 75019 20336070 ~ 20337274 (+)
XLOC_004675 NA coding upstream 146828 20263585 ~ 20265465 (+)
XLOC_004674 mgrn1a coding upstream 255279 20122256 ~ 20157014 (+)
XLOC_004673 mrtfba coding upstream 367192 19976400 ~ 20045101 (+)
XLOC_004679 NA coding downstream 9558 20491619 ~ 20504801 (+)
XLOC_004680 si:zfos-754c12.2 coding downstream 24136 20506197 ~ 20508359 (+)
XLOC_004681 gna13a coding downstream 70129 20552190 ~ 20564678 (+)
XLOC_004682 AMZ2 coding downstream 85321 20567382 ~ 20575381 (+)
XLOC_004683 arsg coding downstream 101491 20583552 ~ 20600378 (+)
XLOC_004670 NA non-coding upstream 953008 19458809 ~ 19459285 (+)
XLOC_004667 BX649366.2 non-coding upstream 1024020 19388143 ~ 19388273 (+)
XLOC_004660 NA non-coding upstream 1141137 19267759 ~ 19271156 (+)
XLOC_004648 NA non-coding upstream 1544318 18861278 ~ 18867975 (+)
XLOC_004689 NA non-coding downstream 324836 20806897 ~ 21106987 (+)
XLOC_004691 FO704814.1 non-coding downstream 955285 21437346 ~ 21437458 (+)
XLOC_004694 NA non-coding downstream 1275756 21757817 ~ 21799396 (+)
XLOC_004695 NA non-coding downstream 1535885 22017946 ~ 22019770 (+)

Expression


Co-expression Network