G96906 (LOC103364786,LOC104920247)


Basic Information

Item Value
gene id G96906
gene name LOC103364786,LOC104920247
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 21127063 ~ 21174307 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU130764
AAGCTTCTGCACATATGAAGGATTTATAACAAGTTATTTTGCATTTAAGGTTAtataacattttgtttgtttgataaggcattgtaaaaaaacaaaagaacaagAGTACAAGTGACCTAACCAAAATGGCTAGCCCCACCAGCACAACTCAGTTTAAGGTCATAGCAAGTGCAGAGGTTCACAGGTCAACtcacaaaaaatgtataataatcaGTGCTCAAAGTCTGTGAGGTGTAGACAGGTAATGTGACACGTATCAGTATCCGTGAACATTAGACAGAGATATTTGGTTTTGAGAGTGTATGCAGAAACACTCCAAATAGAGTTAGAGCACGCCCCCCCGAAGTATTACAGTGACATTGTAATGGCTGAGAGTGACGCTGAAGACGTCAAACTAGACTATCCTGATTTTAATCAAACTTTCCCAGTTTGAGCTTATGCACAAAAGGCCTTCATTTATCCACGGCATACTGTATAATAGTTACACTAGTGTCAATGTATTCATTGCATTCCTATGCagtaaaaaacaatatatatgtaACTTACTTTCACATGTACAGACTATACATATTTATATTCAGGTACATTTACACATGCTAAACGTGAACTCTGTCCGTAGTGTCATTAAATACAGAACCTCCCTTCTGATACCGCTTTTCCCCAAAGCTTCTGTTTCTATTGCCGTCTGTCCCACATTCCTGTGCAAGTCACTCTACAACTTACATTTATGGTGTAGCTGCAAACCTATTTGAAGAACACTCAAATGTGTGCTTTTGGGGAAAGTGGCGCAGCAAAAGACTCTGTAGTCATATCCAAcatggttagatttttttgtagGGGAAAAAGTAGGGGAAGATTTTCACAGTTAAAGCAGGCTCTGAGCAACTGTCAACAGCCCAGAAAAGGACATGGGCAAGCAAGCACTGACCCTCAAGAAAAAGTGCATAGCCAGATCCAACCTCAGGTGTAAAGACCAAACTGCATGCATTACCAAAATATAAGCACATATGGCACACATACACGAAACACATTTCAGCACTCCCCCTTTATAACTGCTGGTCTTATCTTGAATTTTAAATTCCAAAAACATTCACAAGTGTATACTGAAGCTGGACCGATGCATTCGTTTGGCAACTTGACtatttaaacctgcaataagtGATAATTTTCAGAGGTCATTTACAGTTAACAAGCCCAGACATGCAAATCACAACTACTTGCCCAGAAGGAAATTGCTAAACGTAAATGAATGTCTGGCGaagacattttttatattttagcaAACTTAAGAcctagatatttccctcaggagtcgGTCGACCAAGCAGAGCTAACAAGTTAATATTGGACTACATAATTGTTTGCTTACAGGTTGGACctttctttctttctttctttctttctttctatttgtGCTGAAAAACATTTGACACTTCAGGGCTtcaaacacagcaaacacagtGACATCTGGTAGCTTGTAAAACTTACAGCAGCCCTTCGAGACGAGCCAAAGCAGTACTTAACACCTCTCTGATTTTAATAGTTTTAGTCTCATACGTGTTATTTTATATGAATCGCAATGTGATGTGATTGAATGATATTCATTAAATTAGTCTTACTTTTATAACATTATTACTTGGTATTAGATGGAAATGTTATCATACTATCGATTGTGACATTATGACATCGCCACATTTCTCAGTTATTCTCCTCTCGTCGTAGCATAGCAATATAGTTTAGCCGCTTCActtttttaaagctgcagacGGTCACCAGTCAAGTGGTATTCTTGTATTGACACAATCTCAGTTACACTTTATTAAAAACGGTGCTCCTCACAGGAGTGAAACGATATTCGGTATCACCCCCCCCCATCTCAAGGTTAGACATAAGAAATTATAAGCTTGATTTCTTAACgcaattttttatttgtctgggtttcactggaattgttgttTTGTGGTCTAAATGCTGTTTCCGAGTCTTGCAAAGCAAACTTTTGCAAAAGTATATGCAATACCCACAATTCTTATTTTTTGACAAAGAGGTCACATTTAAAAGGTATTAAAAATTGTTGGAAAATATCTGCTATTGGCCACTTAAGCCTAACAAAATTGGCACTAAACTACAATGAAGCATCGATCCAGGTCCCATATAGACTTTTGGAATAGTTGTCGTCCATTATGGCAATCGGAACCCTTTTCTTTACTCCATATGCAACATTTGTTATGCCCGCTGAGTTAAATGATTTGCTACAGTGTGACAGCATAGATGTAACTTGAGGAAAATCAGCAGAGGTTGGTTGGTTTTGGTATTGCAATATCCTTCCTGCCATTACTTCACCTCAATGATGAAAAGGTTAGTGCAAATTTCAACAGCGCTGGCTCAGGCAAAGATTGCATTAGTCCATTGACCAGACAGTTAATAGTCTTTCTGAATGTGTTGAATGGGGAAGGCTGGTGATACCACAACAGTGATACTGCTAAATGATCAGATGGTCTTAGTGTAGGTTAGGGCTTTTGTTGGAGTAGTAGTGAGAGACCGGTTTACTTCCCATGGCCACCGCTAGTACCACTAGTAGAGCTAGTGTTGACTATATCCTCATACTGTGGAGGTGGCTCCGTCTCTATTTGGACATCTGCATGGCCCACAGCCTCTTCATAAGATGGCGGCGGGTCTCCACCGCTTCCTCTTCCTGATGTGAGCTCTGAGCCTGGATAAGCTGGGCTGCTGTGGACGCTGAGTTCCGAGTCCCTCCCCCAATGGTCCATAGAGACCACTGACAGGACGTGGTCGTTATGAGAGTGTCCCAGGCTGGGGCTGCGCTGCGAGCGCTTGCGGGAGTGGCAGCGCCACACAGTAATGGCGACGGCGACAATGATGAGCACAACCAGCAGCAATGGCACGATCAAGTAGAGAGAGTGGACTCCTCCAACCACTGTCTCCAGCCCTCCAGATGGACTGCTCTCCCGCACATACTCCTCCCAGAAC
>TU130765
ctctttctttctttgtttctttctttctttctttctttctttctttctttctttctttctatttgtGCTGAAAAACATTTGACACTTCAGGGCTtcaaacacagcaaacacagtGACATCTGGTAGCTTGTAAAACTTACAGCAGCCCTTCGAGACGAGCCAAAGCAGTACTTAACACCTCTCTGATTTTAATAGTTTTAGTCTCATACGTGTTATTTTATATGAATCGCAATGTGATGTGATTGAATGATATTCATTAAATTAGTCTTACTTTTATAACATTATTACTTGGTATTAGATGGAAATGTTATCATACTATCGATTGTGACATTATGACATCGCCACATTTCTCAGTTATTCTCCTCTCGTCGTAGCATAGCAATATAGTTTAGCCGCTTCActtttttaaagctgcagacGGTCACCAGTCAAGTGGTATTCTTGTATTGACACAATCTCAGTTACACTTTATTAAAAACGGTGCTCCTCACAGGAGTGAAACGATATTCGGTATCACCCCCCCCCATCTCAAGGTTAGACATAAGAAATTATAAGCTTGATTTCTTAACgcaattttttatttgtctgggtttcactggaattgttgttTTGTGGTCTAAATGCTGTTTCCGAGTCTTGCAAAGCAAACTTTTGCAAAAGTATATGCAATACCCACAATTCTTATTTTTTGACAAAGAGGTCACATTTAAAAGGTATTAAAAATTGTTGGAAAATATCTGCTATTGGCCACTTAAGCCTAACAAAATTGGCACTAAACTACAATGAAGCATCGATCCAGGTCCCATATAGACTTTTGGAATAGTTGTCGTCCATTATGGCAATCGGAACCCTTTTCTTTACTCCATATGCAACATTTGTTATGCCCGCTGAGTTAAATGATTTGCTACAGTGTGACAGCATAGATGTAACTTGAGGAAAATCAGCAGAGGTTGGTTGGTTTTGGTATTGCAATATCCTTCCTGCCATTACTTCACCTCAATGATGAAAAGGTTAGTGCAAATTTCAACAGCGCTGGCTCAGGCAAAGATTGCATTAGTCCATTGACCAGACAGTTAATAGTCTTTCTGAATGTGTTGAATGGGGAAGGCTGGTGATACCACAACAGTGATACTGCTAAATGATCAGATGGTCTTAGTGTAGGTTAGGGCTTTTGTTGGAGTAGTAGTGAGAGACCGGTTTACTTCCCATGGCCACCGCTAGTACCACTAGTAGAGCTAGTGTTGACTATATCCTCATACTGTGGAGGTGGCTCCGTCTCTATTTGGACATCTGCATGGCCCACAGCCTCTTCATAAGATGGCGGCGGGTCTCCACCGCTTCCTCTTCCTGATGTGAGCTCTGAGCCTGGATAAGCTGGGCTGCTGTGGACGCTGAGTTCCGAGTCCCTCCCCCAATGGTCCATAGAGACCACTGACAGGACGTGGTCGTTATGAGAGTGTCCCAGGCTGGGGCTGCGCTGCGAGCGCTTGCGGGAGTGGCAGCGCCACACAGTAATGGCGACGGCGACAATGATGAGCACAACCAGCAGCAATGGCACGATCAAGTAGAGAGAGTGGACTCCTCCAACCACTGTCTCCAGCCCTCCAGATGGACTGCTCTCCCGCACATACTCCTCCCAGAAC

Function

NR:

description
PREDICTED: transmembrane gamma-carboxyglutamic acid protein 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU130764 True 2991 lncRNA 0.41 2 21171266 21174307
TU130765 False 1643 lncRNA 0.43 2 21127063 21174307

Neighbor

gene id symbol gene type direction distance location
LOC120564993 LOC104965956 coding upstream 51625 21073118 ~ 21075438 (+)
ccdc50a ccdc50 coding upstream 66224 21036277 ~ 21060839 (+)
usp13 NA coding upstream 259075 20825520 ~ 20867988 (+)
ndufb5 ndufb5 coding upstream 302488 20820248 ~ 20824575 (+)
actl6a actl6a coding upstream 310177 20810183 ~ 20816886 (+)
tmem47 tmem47,LOC102234870,LOC103464126 coding downstream 8496 21182803 ~ 21189074 (+)
nexn nexn coding downstream 28625 21202932 ~ 21215185 (+)
mindy4 NA coding downstream 43424 21217731 ~ 21226366 (+)
zgc:153738 iqca1 coding downstream 68038 21242345 ~ 21250161 (+)
obscna LOC102302552,LOC103364793,LOC102212669,LOC108230617 coding downstream 86620 21260927 ~ 21308569 (+)
G96898 NA non-coding upstream 64759 21061672 ~ 21062304 (+)
G96871 NA non-coding upstream 117753 21005731 ~ 21009310 (+)
G96782 NA non-coding upstream 346145 20776558 ~ 20780918 (+)
G96777 NA non-coding upstream 377167 20749212 ~ 20749896 (+)
G96775 NA non-coding upstream 383288 20743067 ~ 20743775 (+)
G96963 LOC102235645,LOC103464121,LOC107392658,LOC103138531,LOC103371596,LOC106936986,LOC107100776,LOC101155672 non-coding downstream 136605 21310912 ~ 21314520 (+)
G97009 NA non-coding downstream 193811 21368118 ~ 21456800 (+)
G97011 dmap1 non-coding downstream 198634 21372941 ~ 21373533 (+)
G97064 NA non-coding downstream 484243 21658550 ~ 21676349 (+)
G97096 NA non-coding downstream 569106 21743413 ~ 21744681 (+)
prkacba prkacb other upstream 562239 20548999 ~ 20564824 (+)
G96513 NA other upstream 1595386 19530767 ~ 19531677 (+)
G96418 tsc22d2 other upstream 2341427 18782600 ~ 18785636 (+)
nmur1a LOC103368681,LOC104952433 other upstream 2461950 18646703 ~ 18665113 (+)
nppc nppc,LOC104932751,LOC103372810 other upstream 3267652 17855631 ~ 17859411 (+)
LOC120565275 ctxn1,LOC108166259,LOC106954365,LOC103138526,LOC104947303,LOC105353898 other downstream 237029 21411336 ~ 21441558 (+)
lsm7 lsm7,LOC102793261 other downstream 380587 21554894 ~ 21557731 (+)
G97093 NA other downstream 516590 21690897 ~ 21782000 (+)
G97321 NA other downstream 1109339 22283646 ~ 22287272 (+)
LOC120565764 LOC103367403 other downstream 1311204 22485511 ~ 22491235 (+)

Expression


Co-expression Network