rnf11b (rnf11)


Basic Information

Item Value
gene id rnf11b
gene name rnf11
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 22657480 ~ 22676178 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU131444
ACTGGAAAGTCCCTGACAGCCAGGGAGGCTTCAGACAGGAAGACTACGATGAGGAGCAGATCCATGTGCCTATCTATCACCCAACACCCAGCCAAGCACGACTGGCCACtcagctgacagaggaggagcAGGTTCGCATCGCACAGCGAATCGGACTCATCCAACACCTCCCGAAGGGCGTGTACGACCCAGGGCGCGATGGCTCTGAGAAGAAGATCAGAGAGTGCGTCATCTGTATGATGGACTTTGTGTACGGAGACCCCATTCGGTTCCTGCCCTGCATGCACATCTATCACATGGACTGTATAGATGACTGGCTGATGAGATCCTTCACCTGCCCCTCCTGCATGGAGCCTGTGGACGCCGCGCTGCTTTCTTCCTACGAGACCaactgacatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaagttagcCTGCTGGACAGGATTAGAGGAATGAACAGAGTGTTAGTGTTAAGGATGAGCAGGTAGGAGCTGGATCGAGGAGAGCGGTAAAAGACAGGAACGGACAATGGGGGTTATGAGGATACAAGTGTAAAGGGAAGTCAAGGGGAGGGGATGATGGTAAACTGATATGATTATGACATTTCCAAGATCCTCTTTTATATGCGTGAATACACAAACAACCGTTCCCATTCACACCATATAGGATTAAGGTAATGTGACCACCATCATCAGGCTGCAGATTGTGCTTAATGGACTGCTGAAGCCTGATTGCTATAATGTCCCACTGCAAGACGAGAGGAAAGAAACGCCCTTCAGAAGATCTACCAGATGCTTTGACATGTCTACAAAGGGTATGACTCCACACACACTGTTGCAGAGTCATATCTGCTTGCAAAACTGCTACTGATGCAGATGTGTGATTTAAAGACTGCTGGAACTGCACGTCAGACTTGAGACTACGGACATCAGATATGTTCTGCAGACACACCACAGGCCTTCACTGGACCAAGGCACCCAGGCCCGTagttgtctgtctgtaaagacCTTTTGTGAGAAAAATAAGATTGGTCGTTTGATGGATTGATCGTCCCGTAGCTTTGTGAAATCtgttctgtgtttgttttgtcagtCAGCATAAGGGCTTCGTCGAACCAGTATAACACAGATATGACAGAGgaaatacagtatgtgctttTGTCACTAATGTTATCGATAGCTGGTCGACTGTTGCTTTCAAGCTATCGACTCCTCATGACTTTCTCAGTCACAGTGAGATCTCAGATTATTGGCCAAAGCACTAGTAGACCAGTTAACAAACCATTGATACAAATCAGTGGTATTTGCACTTCTTATATTAGACTTATGACAAACGTTGACCATATGCATTTAGTAATTATGTCAAAGTGAAGTATGTGATTTCAAGGATGGAattaaaaacatacacaagGGTTGGGCTCATTTAATGTGTTTGCATATGTTAGGTATCTCTTCATTCAGCATCCTGTCCTGTGGCAAACATGTTCATAAAACCAGACCTAAAGCAAACACGGGAAACGGTTAACGCTGGCAGGCGCTACCACAAGGACACTGGTGATGGAAAATGTGCTTATGGGTTGTGTGTCAGTAAATATAACTGAAGATGCTTATTTACCTAATGTGGTCAGAATCAGCCACATTGCATTGTAATGTGTTCCCAGTTTAGAAAGGTTATGTTTCtatccatttttattttcaatcaaTTTGAGGCCTCAGTCATAATGAAAgtccttttttaattttaaaatgtctaTTGCCCAAGTCATCCAGTTTACTGTTAAagcacaaagaaataaaattgtTCAGTTATACTTTCCTTCTCCCTGCTAACTTTGGGATGCAGGTGAGTCGGTAACACTTTGAATTATGCAGGAAATGGTAAGTCATTTGAGCTTCCCCTGCATAAATGCATGATACAGATCCAACgctgtgtgtgtgtgtgtgtgtgttatggccTTTTGTGTATGTTTGAGAAAGTGTGGGTGGGGGATGGAGTTGGCACCTTAGTTTCTGCACAGCATTTTAATCTATGTAACTCTTGTTGTACATTGCCCTCCATCAGTAAGGTGAAGCTTCATGGCCTTAGGTTACACATGAGTGAGTGGGTATCAGCTGCTAAAATGTGGAGCAGTGGAGTCCATATAACTTCAAGAGGAGGTGGGGTGATACAGGGATAGTTTAGACTGTGAATGCTGCTGCAGAGCTGTCATTGCACATTCCATGTTCCTCCCACTTTCTTCTCTACTGTGGTACAGTGGACGGACGTTTCATATACAAAAGCCTTTTGGAaggttttccttttttccatCTCAGTCTGGATGTAATCATGGGGTTGATTAACAAAGTTATAGAGGAATGCCATTTAAATTAAAAGTAGCATATACTAAGCAGCCATTGTTGGTTGTTGTTTGTCAACACATAGTCTGAGTCTGAGTCATAGCCAGACCTACCTATCTCCGCAGTGCTGTGTCAgtgctggagtatggtctggctacattGCTTATGTGCAGatcttcattgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtGCGCACCCGCGCGCTGGGGGTTACAGACCTACAGTACCAGTCGAAAGTAAATTAGTAGATTACTTTTGCATGAGTATACATTTTTTAGGAAAATGCTGCTTAGTACACCTTTTAAGAATTCCAGTATGTTATTTCCATGGTCaatatttgtgaacatgagCTACTCTCTCTCAAAGCCAGAAACCAGAGAAGTAAGTCTCAAacttgtgatgtcatcaggtaTAAAGTCTGGACCTGCTCCATAGTCAATGaatgcttgttttcttttttttatacccAAACAAGCTTTATTCTCGTGttgtgttctcagttctgaaacagaaaatgtaccCATGTGCTCTCAGTGTCATCTCAAATATCTAACCCAATTCATTGTCTATGGAGCAGTTCCAGACTTTATTATTGTATGACATCACAAATTTGAGTTTTAACACTAGTTTTTGGATTTGGGAGAGAGTTGTTCATGTTTACTAATATTTTTGGACTGTCTTAGACCATAAGAATAACCTATGAATTTTCAAATTGGGTATAGTTCCCCTTAAAACCACTTCAATAAACTACGTAAATAATCAAAGGAACTAAATAAAAGAAACCACATACTGGTTAATGTGAAAACTAGCACTCTTCCAAAGCTACATGTTTATGCATTAGTGTGGCACTTTGTGGAGCTGCTTCATTTACTCTCTGTGGGAAATTTGACATGTTGGAGCTCTTGCAACTGAATAGATTTCCAGTAAGATCAGTTCAGTTACAAAATGTGCTCATATCCCTGGGAAATGACTCACTGGTGTCTGTCATTCGCTAACAATTAACAGCTGCACAAATGTTTCTCATTCATGTGCCAGATAGGCTCGGTCTTTGAATCTCGGGAGAAACCTAAAAGTGTCCACTTTTTACAGGAATGATAAGTAAGTGCTGATTAAGGGTGGATTTTTTAAGTTCAGGATTGAACATTAAGGTTTGCTCACATGTGAATGGGGTATGTgtgctgtatgtttgtgtatggcTGCTTGTTagacctttccttgtttgtaaGCATACATGTACATAGCTATGTACTACAGAAAAGTAATAAATGGACATTGCAACTGAAAATAACTGCCACTGGGTGTGGTTATTTCCTCT
>TU131445
ACTGGAAAGTCCCTGACAGCCAGGGAGGCTTCAGACAGGAAGACTACGATGAGGAGCAGATCCATGTGCCTATCTATCACCCAACACCCAGCCAAGCACGACTGGCCACtcagctgacagaggaggagcAGGTTCGCATCGCACAGCGAATCGGACTCATCCAACACCTCCCGAAGGGCGTGTACGACCCAGGGCGCGATGGCTCTGAGAAGAAGATCAGAGAGTGCGTCATCTGTATGATGGACTTTGTGTACGGAGACCCCATTCGGTTCCTGCCCTGCATGCACATCTATCACATGGACTGTATAGATGACTGGCTGATGAGATCCTTCACCTGCCCCTCCTGCATGGAGCCTGTGGACGCCGCGCTGCTTTCTTCCTACGAGACCaactgacatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaagttagcCTGCTGGACAGGATTAGAGGAATGAACAGAGTGTTAGTGTTAAGGATGAGCAGGTAGGAGCTGGATCGAGGAGAGCGGTAAAAGACAGGAACGGACAATGGGGGTTATGAGGATACAAGTGTAAAGGGAAGTCAAGGGGAGGGGATGATGGTAAACTGATATGATTATGACATTTCCAAGATCCTCTTTTATATGCGTGAATACACAAACAACCGTTCCCATTCACACCATATAGGATTAAGGTAATGTGACCACCATCATCAGGCTGCAGATTGTGCTTAATGGACTGCTGAAGCCTGATTGCTATAATGTCCCACTGCAAGACGAGAGGAAAGAAACGCCCTTCAGAAGATCTACCAGATGCTTTGACATGTCTACAAAGGGTATGACTCCACACACACTGTTGCAGAGTCATATCTGCTTGCAAAACTGCTACTGATGCAGATGTGTGATTTAAAGACTGCTGGAACTGCACGTCAGACTTGAGACTACGGACATCAGATATGTTCTGCAGACACACCACAGGCCTTCACTGGACCAAGGCACCCAGGCCCGTagttgtctgtctgtaaagacCTTTTGTGAGAAAAATAAGATTGGTCGTTTGATGGATTGATCGTCCCGTAGCTTTGTGAAATCtgttctgtgtttgttttgtcagtCAGCATAAGGGCTTCGTCGAACCAGTATAACACAGATATGACAGAGgaaatacagtatgtgctttTGTCACTAATGTTATCGATAGCTGGTCGACTGTTGCTTTCAAGCTATCGACTCCTCATGACTTTCTCAGTCACAGTGAGATCTCAGATTATTGGCCAAAGCACTAGTAGACCAGTTAACAAACCATTGATACAAATCAGTGGTATTTGCACTTCTTATATTAGACTTATGACAAACGTTGACCATATGCATTTAGTAATTATGTCAAAGTGAAGTATGTGATTTCAAGGATGGAattaaaaacatacacaagGGTTGGGCTCATTTAATGTGTTTGCATATGTTAGGTATCTCTTCATTCAGCATCCTGTCCTGTGGCAAACATGTTCATAAAACCAGACCTAAAGCAAACACGGGAAACGGTTAACGCTGGCAGGCGCTACCACAAGGACACTGGTGATGGAAAATGTGCTTATGGGTTGTGTGTCAGTAAATATAACTGAAGATGCTTATTTACCTAATGTGGTCAGAATCAGCCACATTGCATTGTAATGTGTTCCCAGTTTAGAAAGGTTATGTTTCtatccatttttattttcaatcaaTTTGAGGCCTCAGTCATAATGAAAgtccttttttaattttaaaatgtctaTTGCCCAAGTCATCCAGTTTACTGTTAAagcacaaagaaataaaattgtTCAGTTATACTTTCCTTCTCCCTGCTAACTTTGGGATGCAGGTGAGTCGGTAACACTTTGAATTATGCAGGAAATGGTAAGTCATTTGAGCTTCCCCTGCATAAATGCATGATACAGATCCAACgcagtttggtgtgtgtgtgtgtgtgtgtgtgtgt
>XM_039812087.1
CGTTGTTCGGCAGCTGCAAACTGGAAAGTCCCTGACAGCCAGGGAGGCTTCAGACAGGAAGACTACGATGAGGTTTGTCCATCCACATGAAGGATATTAATATTGTCTTTGTTTTGCTACCTCCGCggataaaaaaacatctgtgtGGTTGTGATTTATTTTCGAGTAACGTTAGATGCTCTTTTACGAGTGCTATCTTATATCCCTGTGCAAGCTAGTTCTTTgtgtggctaacgttagctgctagcagagggatgttttgtttttgttaaagcccTCCCGTCGTCTGGGAGAGGAGCCTCATCAGCTGTGCATGGAGAAACGCCTTCTCTTCTGCTGACATTACGTTATCTCTGAAATTGGCCCGTGAAATCCCGCTGAGTAGCGTTAGTAAAGCGACACCGAGATAGGGGAGAGTTTGACCGAAGGAAGGAGATGGGAAACTGTCTGAAGTCCCCAACCTCGGATGATATTTCTTTGCTACATGAATCTCAGTCGGACCGTGCCAGCTACGGAGACGGTGCTGACCCCGACCTGGAGCCACCGCCCCCCTATCAGGAGCAGATCCATGTGCCTATCTATCACCCAACACCCAGCCAAGCACGACTGGCCACtcagctgacagaggaggagcAGGTTCGCATCGCACAGCGAATCGGACTCATCCAACACCTCCCGAAGGGCGTGTACGACCCAGGGCGCGATGGCTCTGAGAAGAAGATCAGAGAGTGCGTCATCTGTATGATGGACTTTGTGTACGGAGACCCCATTCGGTTCCTGCCCTGCATGCACATCTATCACATGGACTGTATAGATGACTGGCTGATGAGATCCTTCACCTGCCCCTCCTGCATGGAGCCTGTGGACGCCGCGCTGCTTTCTTCCTACGAGACCaactgacatacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaagttagcCTGCTGGACAGGATTAGAGGAATGAACAGAGTGTTAGTGTTAAGGATGAGCAGGTAGGAGCTGGATCGAGGAGAGCGGTAAAAGACAGGAACGGACAATGGGGGTTATGAGGATACAAGTGTAAAGGGAAGTCAAGGGGAGGGGATGATGGTAAACTGATATGATTATGACATTTCCAAGATCCTCTTTTATATGCGTGAATACACAAACAACCGTTCCCATTCACACCATATAGGATTAAGGTAATGTGACCACCATCATCAGGCTGCAGATTGTGCTTAATGGACTGCTGAAGCCTGATTGCTATAATGTCCCACTGCAAGACGAGAGGAAAGAAACGCCCTTCAGAAGATCTACCAGATGCTTTGACATGTCTACAAAGGGTATGACTCCACACACACTGTTGCAGAGTCATATCTGCTTGCAAAACTGCTACTGATGCAGATGTGTGATTTAAAGACTGCTGGAACTGCACGTCAGACTTGAGACTACGGACATCAGATATGTTCTGCAGACACACCACAGGCCTTCACTGGACCAAGGCACCCAGGCCCGTagttgtctgtctgtaaagacCTTTTGTGAGAAAAATAAGATTGGTCGTTTGATGGATTGATCGTCCCGTAGCTTTGTGAAATCtgttctgtgtttgttttgtcagtCAGCATAAGGGCTTCGTCGAACCAGTATAACACAGATATGACAGAGgaaatacagtatgtgctttTGTCACTAATGTTATCGATAGCTGGTCGACTGTTGCTTTCAAGCTATCGACTCCTCATGACTTTCTCAGTCACAGTGAGATCTCAGATTATTGGCCAAAGCACTAGTAGACCAGTTAACAAACCATTGATACAAATCAGTGGTATTTGCACTTCTTATATTAGACTTATGACAAACGTTGACCATATGCATTTAGTAATTATGTCAAAGTGAAGTATGTGATTTCAAGGATGGAattaaaaacatacacaagG

Function

symbol description
rnf11 Enables ubiquitin protein ligase activity. Involved in protein autoubiquitination and ubiquitin-dependent protein catabolic process. Located in extracellular exosome. Part of ubiquitin ligase complex.

NR:

description
PREDICTED: RING finger protein 11

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU131444 True 3762 lncRNA 0.42 5 22657499 22676178
TU131445 False 2040 lncRNA 0.45 3 22657499 22674237
XM_039812087.1 False 1997 mRNA 0.47 3 22657480 22673689

Neighbor

gene id symbol gene type direction distance location
ttc39a ttc39a coding upstream 454 22625085 ~ 22657026 (+)
eps15 LOC103370402 coding upstream 33945 22591643 ~ 22623535 (+)
calr LOC102308154,LOC102192544,LOC101484884,LOC100701980,LOC107393148,LOC108230540 coding upstream 68161 22584206 ~ 22589319 (+)
tor3a tor3a coding upstream 74825 22577197 ~ 22582655 (+)
osbpl9 osbpl9 coding upstream 87180 22530087 ~ 22570300 (+)
faf1 faf1,LOC102783815 coding downstream 21902 22698080 ~ 22764088 (+)
dmrta2 dmrta2 coding downstream 98830 22775008 ~ 22778191 (+)
agbl4 agbl4 coding downstream 140373 22816551 ~ 23246315 (+)
bend5 bend5,LOC102785035 coding downstream 500329 23176507 ~ 23191077 (+)
ccl44 LOC103365223,LOC103463524,LOC102231954,LOC103138454,LOC103397632 coding downstream 655600 23331778 ~ 23335697 (+)
G97410 NA non-coding upstream 62203 22594496 ~ 22595277 (+)
G97338 NA non-coding upstream 334625 22322492 ~ 22322855 (+)
G97335 NA non-coding upstream 341122 22313648 ~ 22316358 (+)
G97297 NA non-coding upstream 483087 22158057 ~ 22174393 (+)
G97295 NA non-coding upstream 499522 22156111 ~ 22157958 (+)
LOC120565733 NA non-coding downstream 104429 22780607 ~ 22800145 (+)
G97485 elavl4,LOC107657884 non-coding downstream 189649 22865827 ~ 22870448 (+)
G97489 NA non-coding downstream 238338 22914516 ~ 22918731 (+)
G97537 NA non-coding downstream 647794 23323972 ~ 23324176 (+)
G97538 NA non-coding downstream 648081 23324259 ~ 23324499 (+)
LOC120566218 NA other upstream 80932 22571754 ~ 22576548 (+)
LOC120566217 NA other upstream 81278 22576129 ~ 22576202 (+)
LOC120566220 NA other upstream 82332 22575067 ~ 22575148 (+)
LOC120566221 NA other upstream 82556 22574843 ~ 22574924 (+)
LOC120566225 NA other upstream 82808 22574591 ~ 22574672 (+)
spata6 spata6 other downstream 572951 23249129 ~ 23282671 (+)
LOC120565086 NA other downstream 624628 23300806 ~ 23303691 (+)
pole4 NA other downstream 645286 23321464 ~ 23323484 (+)
LOC120565078 LOC104955513,LOC104923635,LOC103365215,LOC100690174 other downstream 702553 23378731 ~ 23380375 (+)
G97596 lpl,LOC108280930,LOC105906969 other downstream 798604 23474782 ~ 23477818 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000010_04753467_04770912 RNF11L2, RNF11B, RNF11 coding CI01000010 null 4753231 ~ 4771674 (+)