spata6 (spata6)


Basic Information

Item Value
gene id spata6
gene name spata6
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 23249129 ~ 23282671 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU131560
aggCTCCAGACCAGTCCATCCTACTGCGAGCAGATCCACAGCCGAGTCCAGAGAATtctgcagacacacaaaaccaccTGGGGACCACCaaatgacctttgacctttaaCTTCCTGATCTGTCCACAAGCAACCCACCTCCTGCAGTTATTACACAATACTATGAAAAGCCAGCCAGAGTCCGTTTTCATCACATCACGATTCATTTCTTATGGAAtttattcttcttcttgttcCTCTTGCCAGCTCCTTGTGCTGCTTTCTCCGTCACAATGTGCTGGTACTTCTTTTTGTTGTTCCTGATAAGACAAGAGGAAAGTATATTTTGTCTGCAGAAATGGCAATATACTGTCAAGCAAACACCTAAAAATGTGCCCACACGTTAGCAAATGGGGCTGTGGTGTTGCAATGTATTCCGTGACCCATCAGATTCTGTAACCTGATGAGAAATAAGTTTATGATggttacatactgtattttgataGCAGATTGTGATTAAATAGATTTGAAATATGGTGCCCAGTATAGATTTATCTGTACATCGCTAATACCTCACGTCAATATTTGGTCAAACCATCAGtctataataacaataaagc
>XM_039811736.1
gtcactttttggtcACATGACTGTACATCCGCCCTGTGTGACTGTTGCTGTGTGGCAGCTATGACAACGAACTTTCAAAAGTTGGATGAATGGCTTCAATGAAGAAGAAGCTTTCCTCTTCTAAGGTGCATCACAAGTCTCTGAAATGTACCGTATATTTGGACATTCAGACAGTCACATGTCCAGGAGTGTTCCTGACTAGAAACAACAATATCTACCTCAGTGTGTGTATCATGGGCCAGTACAGGAAGACTCCCTGTTTGCCACCTGCATTCCCTTTACTCTTCCAACACAGAATGGTATTTGTCAAGACTTTTCCCAGTGTTGTTGACCCTGCTGATGTAGCTGACCTCCTGGAAGCTGACATAACATATTTTGAGCTGATTCAGTTGGTGCCTCCAGAGGGTGAGGTCCTAGCAACAATGGAGGAGAGCAGCAGAGATTTTCTGTACCCTGGTCCCAGACTGAGCTCCAGAGAAGGAgtggcagagagagaaataCTGATGAAGAGATCCTCCTCCTTTCCTGGAATCTCCCCCAAAGTGGAGTTTGCCACGACATCAGTCATAGAAGAGATTGATGGGAGAGACCGCTTTTCTGCCTCACCTACTTGCTGTCTTTCTCCAGTGAGGCCATCTTTAACCCCATCCACACAGAGTTCTGCAAAAAAGTATTCACCATCCAGCAGGCATTTTTCCAAAATAGAAGATACGAACTGTTTCTCTTGGAAACGTGGGACGGAAAGGCTAGATGTTGAGGCAAGAATAACGAACTCTGCACCGACCTCAACATCCAGACGCTCCCCTTCTTCATCCCCATCTGGCCGAAGTCCCCAGAATAAAAATAGGGAGAGAAAACACTCTTCTCCTAGAGTTTCTGTAGACTCTGGCTACCAGCAGCCCACAGTTTCCTCACAGACACGAGCCTTGTCCCCTTACACCCATCGCAAGATGTGCCAGCTTTCAGAGGACGCCACGCAGAGGCTTAGCCATCTCCAGCTGGGGCCTCACCACTTCAGGAAGGAGACTGAGAGCCAGCCGCCCTTCTTGGTCCCTCGTTGCAGTAGTGTCTCTGTGATTGGagctccttcctcctctccacaGAATAATAGCATGCGTCGACACTCAGTCAGCGTCACAGCTGATCACACAGATTCTTCTTTCCTGGGGAGTTACAGGCCAAGACCAGCCACAccctgtgacctcttCCAGGTGAAGTCGGGTTCTGTGAGGGTCCAGTCATCTCCAGAGACACAGTCCAGACTTGAAGCCCAGATCAGAAGCCCTGTGAGAGGTGCTGCCTTAGCTCAGTCCACCCTGGCCGTGTCAAACGCCAGAAGTCCTCTAAATCTCAGCCATTCCCTCAGAGAAAGgCTCCAGACCAGTCCATCCTACTGCGAGCAGATCCACAGCCGAGTCCAGAGAATtctgcagacacacaaaaccaccTGGGGACCACCaaatgacctttgacctttaaCTTCCTGATCTGTCCACAAGGTGACCAATAACAGGTTACAATACAGACTACTCA
>XM_039811737.1
tcactttttggtcACATGACTGTACATCCGCCCTGTGTGACTGTTGCTGTGTGGCAGCTATGACAACGAACTTTCAAAAGTTGGATGAATGGCTTCAATGAAGAAGAAGCTTTCCTCTTCTAAGGTGCATCACAAGTCTCTGAAATGTACCGTATATTTGGACATTCAGACAGTCACATGTCCAGGAGTGTTCCTGACTAGAAACAACAATATCTACCTCAGTGTGTGTATCATGGGCCAGTACAGGAAGACTCCCTGTTTGCCACCTGCATTCCCTTTACTCTTCCAACACAGAATGGTATTTGTCAAGACTTTTCCCAGTGTTGTTGACCCTGCTGATGTAGCTGACCTCCTGGAAGCTGACATAACATATTTTGAGCTGATTCAGTTGGTGCCTCCAGAGGGTGAGGTCCTAGCAACAATGGAGGAGAGCAGCAGAGATTTTCTGTACCCTGGTCCCAGACTGAGCTCCAGAGAAGGAgtggcagagagagaaataCTGATGAAGAGATCCTCCTCCTTTCCTGGAATCTCCCCCAAAGTGGAGTTTGCCACGACATCAGTCATAGAAGAGATTGATGGGAGAGACCGCTTTTCTGCCTCACCTACTTGCTGTCTTTCTCCAGTGAGGCCATCTTTAACCCCATCCACACAGAGTTCTGCAAAAAAGTATTCACCATCCAGCAGGCATTTTTCCAAAATAGAAGATACGAACTGTTTCTCTTGGAAACGTGGGACGGAAAGGCTAGATGTTGAGGCAAGAATAACGAACTCTGCACCGACCTCAACATCCAGACGCTCCCCTTCTTCATCCCCATCTGGCCGAAGTCCCCAGAATAAAAATAGGGAGAGAAAACACTCTTCTCCTAGAGTTTCTGTAGACTCTGGCTACCAGCAGCCCACAGTTTCCTCACAGACACGAGCCTTGTCCCCTTACACCCATCGCAAGATGTGCCAGCTTTCAGAGGACGCCACGCAGAGGCTTAGCCATCTCCAGCTGGGGCCTCACCACTTCAGGAAGGAGACTGAGAGCCAGCCGCCCTTCTTGGTCCCTCGTTGCAGTAGTGTCTCTGTGATTGGagctccttcctcctctccacaGAATAATAGCATGCGTCGACACTCAGTCAGCGTCACAGCTGATCACACAGATTCTTCTTTCCTGGGGAGTTACAGGCCAAGACCAGCCACAGTGAAGTCGGGTTCTGTGAGGGTCCAGTCATCTCCAGAGACACAGTCCAGACTTGAAGCCCAGATCAGAAGCCCTGTGAGAGGTGCTGCCTTAGCTCAGTCCACCCTGGCCGTGTCAAACGCCAGAAGTCCTCTAAATCTCAGCCATTCCCTCAGAGAAAGgCTCCAGACCAGTCCATCCTACTGCGAGCAGATCCACAGCCGAGTCCAGAGAATtctgcagacacacaaaaccaccTGGGGACCACCaaatgacctttgacctttaaCTTCCTGATCTGTCCACAAGGTGACCAATAACAGGTTACAATACAGACTACTCA
>XM_039811738.1
tgtcactttttggtcACATGACTGTACATCCGCCCTGTGTGACTGTTGCTGTGTGGCAGCTATGACAACGAACTTTCAAAAGTTGGATGAATGGCTTCAATGAAGAAGAAGCTTTCCTCTTCTAAGGTGCATCACAAGTCTCTGAAATGTACCGTATATTTGGACATTCAGACAGTCACATGTCCAGGAGTGTTCCTGACTAGAAACAACAATATCTACCTCAGTGTGTGTATCATGGGCCAGTACAGGAAGACTCCCTGTTTGCCACCTGCATTCCCTTTACTCTTCCAACACAGAATGGTATTTGTCAAGACTTTTCCCAGTGTTGTTGACCCTGCTGATGTAGCTGACCTCCTGGAAGAGGGTGAGGTCCTAGCAACAATGGAGGAGAGCAGCAGAGATTTTCTGTACCCTGGTCCCAGACTGAGCTCCAGAGAAGGAgtggcagagagagaaataCTGATGAAGAGATCCTCCTCCTTTCCTGGAATCTCCCCCAAAGTGGAGTTTGCCACGACATCAGTCATAGAAGAGATTGATGGGAGAGACCGCTTTTCTGCCTCACCTACTTGCTGTCTTTCTCCAGTGAGGCCATCTTTAACCCCATCCACACAGAGTTCTGCAAAAAAGTATTCACCATCCAGCAGGCATTTTTCCAAAATAGAAGATACGAACTGTTTCTCTTGGAAACGTGGGACGGAAAGGCTAGATGTTGAGGCAAGAATAACGAACTCTGCACCGACCTCAACATCCAGACGCTCCCCTTCTTCATCCCCATCTGGCCGAAGTCCCCAGAATAAAAATAGGGAGAGAAAACACTCTTCTCCTAGAGTTTCTGTAGACTCTGGCTACCAGCAGCCCACAGTTTCCTCACAGACACGAGCCTTGTCCCCTTACACCCATCGCAAGATGTGCCAGCTTTCAGAGGACGCCACGCAGAGGCTTAGCCATCTCCAGCTGGGGCCTCACCACTTCAGGAAGGAGACTGAGAGCCAGCCGCCCTTCTTGGTCCCTCGTTGCAGTAGTGTCTCTGTGATTGGagctccttcctcctctccacaGAATAATAGCATGCGTCGACACTCAGTCAGCGTCACAGCTGATCACACAGATTCTTCTTTCCTGGGGAGTTACAGGCCAAGACCAGCCACAccctgtgacctcttCCAGGTGAAGTCGGGTTCTGTGAGGGTCCAGTCATCTCCAGAGACACAGTCCAGACTTGAAGCCCAGATCAGAAGCCCTGTGAGAGGTGCTGCCTTAGCTCAGTCCACCCTGGCCGTGTCAAACGCCAGAAGTCCTCTAAATCTCAGCCATTCCCTCAGAGAAAGgCTCCAGACCAGTCCATCCTACTGCGAGCAGATCCACAGCCGAGTCCAGAGAATtctgcagacacacaaaaccaccTGGGGACCACCaaatgacctttgacctttaaCTTCCTGATCTGTCCACAAGGTGACCAATAACAGGTTACAATACAGACTACTCA
>XM_039811739.1
tacttgatggaattgagccatcgttaagGTCACATGTCCAGGAGTGTTCCTGACTAGAAACAACAATATCTACCTCAGTGTGTGTATCATGGGCCAGTACAGGAAGACTCCCTGTTTGCCACCTGCATTCCCTTTACTCTTCCAACACAGAATGGTATTTGTCAAGACTTTTCCCAGTGTTGTTGACCCTGCTGATGTAGCTGACCTCCTGGAAGCTGACATAACATATTTTGAGCTGATTCAGTTGGTGCCTCCAGAGGGTGAGGTCCTAGCAACAATGGAGGAGAGCAGCAGAGATTTTCTGTACCCTGGTCCCAGACTGAGCTCCAGAGAAGGAgtggcagagagagaaataCTGATGAAGAGATCCTCCTCCTTTCCTGGAATCTCCCCCAAAGTGGAGTTTGCCACGACATCAGTCATAGAAGAGATTGATGGGAGAGACCGCTTTTCTGCCTCACCTACTTGCTGTCTTTCTCCAGTGAGGCCATCTTTAACCCCATCCACACAGAGTTCTGCAAAAAAGTATTCACCATCCAGCAGGCATTTTTCCAAAATAGAAGATACGAACTGTTTCTCTTGGAAACGTGGGACGGAAAGGCTAGATGTTGAGGCAAGAATAACGAACTCTGCACCGACCTCAACATCCAGACGCTCCCCTTCTTCATCCCCATCTGGCCGAAGTCCCCAGAATAAAAATAGGGAGAGAAAACACTCTTCTCCTAGAGTTTCTGTAGACTCTGGCTACCAGCAGCCCACAGTTTCCTCACAGACACGAGCCTTGTCCCCTTACACCCATCGCAAGATGTGCCAGCTTTCAGAGGACGCCACGCAGAGGCTTAGCCATCTCCAGCTGGGGCCTCACCACTTCAGGAAGGAGACTGAGAGCCAGCCGCCCTTCTTGGTCCCTCGTTGCAGTAGTGTCTCTGTGATTGGagctccttcctcctctccacaGAATAATAGCATGCGTCGACACTCAGTCAGCGTCACAGCTGATCACACAGATTCTTCTTTCCTGGGGAGTTACAGGCCAAGACCAGCCACAccctgtgacctcttCCAGGTGAAGTCGGGTTCTGTGAGGGTCCAGTCATCTCCAGAGACACAGTCCAGACTTGAAGCCCAGATCAGAAGCCCTGTGAGAGGTGCTGCCTTAGCTCAGTCCACCCTGGCCGTGTCAAACGCCAGAAGTCCTCTAAATCTCAGCCATTCCCTCAGAGAAAGgCTCCAGACCAGTCCATCCTACTGCGAGCAGATCCACAGCCGAGTCCAGAGAATtctgcagacacacaaaaccaccTGGGGACCACCaaatgacctttgacctttaaCTTCCTGATCTGTCCACAAGGTGACCAATAACAGGTTACAATACAGACTACTCA
>XM_039811740.1
ttgtcactttttggtcACATGACTGTACATCCGCCCTGTGTGACTGTTGCTGTGTGGCAGCTATGACAACGAACTTTCAAAAGTTGGATGAATGGCTTCAATGAAGAAGAAGCTTTCCTCTTCTAAGGTGCATCACAAGTCTCTGAAATGTACCGTATATTTGGACATTCAGACAGTCACATGTCCAGGAGTGTTCCTGACTAGAAACAACAATATCTACCTCAGTGTGTGTATCATGGGCCAGTACAGGAAGACTCCCTGTTTGCCACCTGCATTCCCTTTACTCTTCCAACACAGAATGGTATTTGTCAAGACTTTTCCCAGTGTTGTTGACCCTGCTGATGTAGCTGACCTCCTGGAAGCTGACATAACATATTTTGAGCTGATTCAGTTGGTGCCTCCAGAGGGTGAGGTCCTAGCAACAATGGAGGAGAGCAGCAGAGATTTTCTGTACCCTGGTCCCAGACTGAGCTCCAGAGAAGGAgtggcagagagagaaataCTGATGAAGAGATCCTCCTCCTTTCCTGGAATCTCCCCCAAAGTGGAGTTTGCCACGACATCAGTCATAGAAGAGATTGATGGGAGAGACCGCTTTTCTGCCTCACCTACTTGCTGTCTTTCTCCAGTGAGGCCATCTTTAACCCCATCCACACAGAGTTCTGCAAAAAAGTATTCACCATCCAGCAGGCATTTTTCCAAAATAGAAGATACGAACTGTTTCTCTTGGAAACGTGGGACGGAAAGGCTAGATGTTGAGGCAAGAATAACGAACTCTGCACCGACCTCAACATCCAGACGCTCCCCTTCTTCATCCCCATCTGGCCGAAGTCCCCAGAATAAAAATAGGGAGAGAAAACACTCTTCTCCTAGAGTTTCTGTAGACTCTGGCTACCAGCAGCCCACAGTTTCCTCACAGACACGAGCCTTGTCCCCTTACACCCATCGCAAGATGTGCCAGCTTTCAGAGGACGCCACGCAGAGGCTTAGCCATCTCCAGCTGGGGCCTCACCACTTCAGGAAGGAGACTGAGAGCCAGCCGCCCTTCTTGGTCCCTCGTTGCAGTAGTGTCTCTGTGATTGGagctccttcctcctctccacaGAATAATAGCATGCGTCGACACTCAGTCAGCGTCACAGCTGATCACACAGATTCTTCTTTCCTGGGGAGTTACAGGCCAAGACCAGCCACACTATACCAgcccagccctgtgacctcttCCAGGTGAAGTCGGGTTCTGTGAGGGTCCAGTCATCTCCAGAGACACAGTCCAGACTTGAAGCCCAGA

Function

symbol description
spata6 Predicted to enable myosin light chain binding activity. Predicted to act upstream of or within spermatogenesis. Predicted to be located in sperm connecting piece. Is expressed in neural tube; spinal cord; and ventral mesoderm. Orthologous to human SPATA6 (spermatogenesis associated 6).

NR:

description
spermatogenesis-associated protein 6

GO: NA

KEGG:

id description
K23224 SPATA6; spermatogenesis-associated protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
TU131560 False 598 lncRNA 0.41 2 23281674 23282671
XM_039811736.1 True 1533 mRNA 0.50 11 23249131 23281836
XM_039811737.1 False 1514 mRNA 0.50 11 23249132 23281836
XM_039811738.1 False 1492 mRNA 0.50 10 23249130 23281836
XM_039811739.1 False 1388 mRNA 0.50 11 23250050 23281836
XM_039811740.1 False 1291 mRNA 0.49 10 23249129 23260156

Neighbor

gene id symbol gene type direction distance location
agbl4 agbl4 coding upstream 2814 22816551 ~ 23246315 (+)
bend5 bend5,LOC102785035 coding upstream 58052 23176507 ~ 23191077 (+)
dmrta2 dmrta2 coding upstream 470938 22775008 ~ 22778191 (+)
faf1 faf1,LOC102783815 coding upstream 485041 22698080 ~ 22764088 (+)
ttc39a ttc39a coding upstream 592103 22625085 ~ 22657026 (+)
ccl44 LOC103365223,LOC103463524,LOC102231954,LOC103138454,LOC103397632 coding downstream 49107 23331778 ~ 23335697 (+)
si:ch1073-396h14.1 LOC103365213 coding downstream 137273 23419944 ~ 23454783 (+)
fam32a fam32a,LOC103365210 coding downstream 303130 23585801 ~ 23588140 (+)
hdgfl2 LOC103368921 coding downstream 308781 23591452 ~ 23599922 (+)
ap3d1 ap3d1 coding downstream 317645 23600316 ~ 23627747 (+)
G97489 NA non-coding upstream 330398 22914516 ~ 22918731 (+)
G97485 elavl4,LOC107657884 non-coding upstream 378681 22865827 ~ 22870448 (+)
LOC120565733 NA non-coding upstream 448984 22780607 ~ 22800145 (+)
G97410 NA non-coding upstream 653852 22594496 ~ 22595277 (+)
G97338 NA non-coding upstream 926274 22322492 ~ 22322855 (+)
G97537 NA non-coding downstream 41301 23323972 ~ 23324176 (+)
G97538 NA non-coding downstream 41588 23324259 ~ 23324499 (+)
G97554 NA non-coding downstream 70169 23352840 ~ 23363480 (+)
G97559 NA non-coding downstream 77387 23360058 ~ 23362720 (+)
G97572 NA non-coding downstream 118358 23401029 ~ 23425798 (+)
rnf11b rnf11 other upstream 572951 22657480 ~ 22676178 (+)
LOC120566218 NA other upstream 672581 22571754 ~ 22576548 (+)
LOC120566217 NA other upstream 672927 22576129 ~ 22576202 (+)
LOC120566220 NA other upstream 673981 22575067 ~ 22575148 (+)
LOC120566221 NA other upstream 674205 22574843 ~ 22574924 (+)
LOC120565086 NA other downstream 18135 23300806 ~ 23303691 (+)
pole4 NA other downstream 38793 23321464 ~ 23323484 (+)
LOC120565078 LOC104955513,LOC104923635,LOC103365215,LOC100690174 other downstream 96060 23378731 ~ 23380375 (+)
G97596 lpl,LOC108280930,LOC105906969 other downstream 192111 23474782 ~ 23477818 (+)
cdc34a cdc34,LOC103368917,LOC104923648,LOC103397164,LOC107393183,LOC103156874 other downstream 348448 23631119 ~ 23650513 (+)

Expression


Co-expression Network