LOC120565086


Basic Information

Item Value
gene id LOC120565086
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 23300806 ~ 23303691 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU131568
GTGCACTATAAGAGTACAGAGCCACTACAAGCTGTCCTGGACAAAAGGTTTACCTCCCAGGACATCTTGTGAAATACTGACTGTGACGAGCAAGAACATCAGCAAACACAGCTATGAAGTTCCAAGCGCTTTTCTTTCTTCTGATCCTCACCTGCATGTACCTGAGTCTTGCACAAGgCTCGTTTGGCAACTGCTGTCTCGGCCATGTTGTAGAGATGAAACAAAAGGCAAAGAGAAACATTGAAAGTTACAGGATACAGGAAACAGATGGCGATTGCAACACCAGCGCTGTTGTGTTTCTGATGAAGAAGCCGTCACGTAAAAAACCGCGGACTGTTTGTGCTAATCCAAATGACCGTTGGGTCCAGGAGCTGATTGAGACTTTGGATAGGAGGATGCAGAATTAGACCACTTAAAGGAGAGAAACAAGAGAAGAAtgggagagaggagagcagaTGTTTCACCTCCCTGTCAGGCATCATATATCACCTTTAACCACTTGCATTATGTTTCAGTAGAGTTGGTATTTCCTGTGCTGACAGAGAATGTAAATGTACACGGTTCACTATAACATGAACATACCATATCCTCAATGTTATAAGCCAGTATAGCAAAATTCATTTATATGATTCTGTTCTTTTCTCTGTGATATATGCAGCACTTGCTAGGAATGAGCCACTGTTTCGCAGCTTTGAAatgtatttgcagtgtgtttgtgtgaacacTTTGGGGATAAGTTGagcctttctttttatttttaccacaGATTTCCATATTTTTATATCAGCATTATATTTGTACTTTGTGTCTTTCtttatcaaataaaggcaataCAAACCAGA
>XM_039810442.1
GAGGAGGTGTGGTGAAGGAGGGAGGGCAGATTTCATGTGTGCACTATAAGAGTACAGAGCCACTACAAGCTGTCCTGGACAAAAGGTTTACCTCCCAGGACATCTTGTGAAATACTGACTGTGACGAGCAAGAACATCAGCAAACACAGCTATGAAGTTCCAAGCGCTTTTCTTTCTTCTGATCCTCACCTGCATGTACCTGAGTCTTGCACAAGgCTCGTTTGGCAACTGCTGTCTCGGCCATGTTGTAGAGATGAAACAAAAGGCAAAGAGAAACATTGAAAGTTACAGGATACAGGAAACAGATGGCGATTGCAACACCAGCGCTGTTGTGTTTCTGATGAAGAAGCCGTCACGTAAAAAACCGCGGACTGTTTGTGCTAATCCAAATGACCGTTGGGTCCAGGAGCTGATTGAGACTTTGGATAGGAGGATGCAGAATTAGACCACTTAAAGGAGAGAAACAAGAGAAGAAtgggagagaggagagcagaTGTTTCACCTCCCTGTCAGGCATCATATATCACCTTTAACCACTTGCATTATGTTTCAGTAGAGTTGGTATTTCCTGTGCTGACAGAGAATGTAAATGTACACGGTTCACTATAACATGAACATACCATATCCTCAATGTTATAAGCCAGTATAGCAAAATTCATTTATATGATTCTGTTCTTTTCTCTGTGATATATGCAGCACTTGCTAGGAATGAGCCACTGTTTCGCAGCTTTGAAatgtatttgcagtgtgtttgtgtgaacacTTTGGGGATAAGTTGagcctttctttttatttttaccacaGATTTCCATATTTTTATATCAGCATTATATTTGTACTTTGTGTCTTTCtttatcaaataaaggcaataCAAACCAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU131568 False 842 lncRNA 0.41 5 23300844 23303691
XM_039810442.1 True 880 mRNA 0.41 5 23300806 23303691

Neighbor

gene id symbol gene type direction distance location
agbl4 agbl4 coding upstream 54491 22816551 ~ 23246315 (+)
bend5 bend5,LOC102785035 coding upstream 109729 23176507 ~ 23191077 (+)
dmrta2 dmrta2 coding upstream 522615 22775008 ~ 22778191 (+)
faf1 faf1,LOC102783815 coding upstream 536718 22698080 ~ 22764088 (+)
ttc39a ttc39a coding upstream 643780 22625085 ~ 22657026 (+)
ccl44 LOC103365223,LOC103463524,LOC102231954,LOC103138454,LOC103397632 coding downstream 28087 23331778 ~ 23335697 (+)
si:ch1073-396h14.1 LOC103365213 coding downstream 116253 23419944 ~ 23454783 (+)
fam32a fam32a,LOC103365210 coding downstream 282110 23585801 ~ 23588140 (+)
hdgfl2 LOC103368921 coding downstream 287761 23591452 ~ 23599922 (+)
ap3d1 ap3d1 coding downstream 296625 23600316 ~ 23627747 (+)
G97489 NA non-coding upstream 382075 22914516 ~ 22918731 (+)
G97485 elavl4,LOC107657884 non-coding upstream 430358 22865827 ~ 22870448 (+)
LOC120565733 NA non-coding upstream 500661 22780607 ~ 22800145 (+)
G97410 NA non-coding upstream 705529 22594496 ~ 22595277 (+)
G97338 NA non-coding upstream 977951 22322492 ~ 22322855 (+)
G97537 NA non-coding downstream 20281 23323972 ~ 23324176 (+)
G97538 NA non-coding downstream 20568 23324259 ~ 23324499 (+)
G97554 NA non-coding downstream 49149 23352840 ~ 23363480 (+)
G97559 NA non-coding downstream 56367 23360058 ~ 23362720 (+)
G97572 NA non-coding downstream 97338 23401029 ~ 23425798 (+)
spata6 spata6 other upstream 18135 23249129 ~ 23282671 (+)
rnf11b rnf11 other upstream 624628 22657480 ~ 22676178 (+)
LOC120566217 NA other upstream 724604 22576129 ~ 22576202 (+)
LOC120566220 NA other upstream 725658 22575067 ~ 22575148 (+)
LOC120566221 NA other upstream 725882 22574843 ~ 22574924 (+)
pole4 NA other downstream 17773 23321464 ~ 23323484 (+)
LOC120565078 LOC104955513,LOC104923635,LOC103365215,LOC100690174 other downstream 75040 23378731 ~ 23380375 (+)
G97596 lpl,LOC108280930,LOC105906969 other downstream 171091 23474782 ~ 23477818 (+)
cdc34a cdc34,LOC103368917,LOC104923648,LOC103397164,LOC107393183,LOC103156874 other downstream 327428 23631119 ~ 23650513 (+)
cks2 LOC104918474,LOC108230759,LOC102216377,LOC104949087,LOC105011584 other downstream 900650 24204341 ~ 24208141 (+)

Expression


Co-expression Network