LOC120565078 (LOC104955513,LOC104923635,LOC103365215,LOC100690174)


Basic Information

Item Value
gene id LOC120565078
gene name LOC104955513,LOC104923635,LOC103365215,LOC100690174
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 23378731 ~ 23380375 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU131669
ATAAACGTTCatcagaacaaaaacaaagtaggTATAGCTGGTTCTGTTGGTGCACTTAAAACTAAACTCGCACTTACTACATCGTATTTGCATTGGACGATAAACCTGAGTGATTTGAGCAAAAATGTCTGATAAAGATCTGTTGTACCCTCGTCTTGCCAAGGAGAGGAGTAAACACAAGAAGAAGAGGCTGGTGCAGAGTCCCAACTCCTACTTCATGGATGTAAAATGCACAGGGTGTTACAGGATCACCACCATTTTTAGCCATGCCCAGACAGTGGTACCTTGTGCAGGCTGCTCTATAATCCTCTGCCAACCAGCAGGGGGGAAATGCAGACTAACTGAaggCTGTGCCTTCAGAAAGAAATATTCCTGAGCAGAAATGTGCAAAACATTCATGACAGGCAGCAGAATGGAAGAATGGACCATGGAAAAATGAGTCTGAGCCTCACACTATGTGCTTTTAAGTGTGTTAAATCCTTCGTAGAGAAATATGTATCTTGACCATTCTTGATCCATATCTTGATCTCAGTGTTTCATAGTACAGAGCAGGAGAGGAGCTATGGAAGCACAAGTTAAATCATACACATCCAATATCAATACACATTCCAATATGCTCAGATGGAATTGTATATATAGCCAATTGATATGATGAAGCACTTAATGTACAGTGGTTTTTACTACTTGTATTGATTAAGTAAAACATGTTATGAAATCTTCAAAATGCACAAAGAGTCCAATGAGTCATGATTTCTGTAAAACATTTATTAGGTTGACATAGAGGGAGTTGGTAAATGAAATATTATAAAATGGTCTCGGGCATGTGTGAGACCCTTTCCATGGCCCTGGCATGAGATGAAACCATGATGACcaccacaaacaaaaataaaacattttttagaaTTT
>XM_039810429.1
CCGCTGGATCTCAGTTTCCATAAACGTTCatcagaacaaaaacaaagtaggTATAGCTGGTTCTGTTGGTGCACTTAAAACTAAACTCGCACTTACTACATCGTATTTGCATTGGACGATAAACCTGAGTGATTTGAGCAAAAATGTCTGATAAAGATCTGTTGTACCCTCGTCTTGCCAAGGAGAGGAGTAAACACAAGAAGAAGAGGCTGGTGCAGAGTCCCAACTCCTACTTCATGGATGTAAAATGCACAGGGTGTTACAGGATCACCACCATTTTTAGCCATGCCCAGACAGTGGTACCTTGTGCAGGCTGCTCTATAATCCTCTGCCAACCAGCAGGGGGGAAATGCAGACTAACTGAaggCTGTGCCTTCAGAAAGAAATATTCCTGAGCAGAAATGTGCAAAACATTCATGACAGGCAGCAGAATGGAAGAATGGACCATGGAAAAATGAGTCTGAGCCTCACACTATGTGCTTTTAAGTGTGTTAAATCCTTCGTAGAGAAATATGTATCTTGACCATTCTTGATCCATATCTTGATCTCAGTGTTTCATAGTACAGAGCAGGAGAGGAGCTATGGAAGCACAAGTTAAATCATACACATCCAATATCAATACACATTCCAATATGCTCAGATGGAATTGTATATATAGCCAATTGATATGATGAAGCACTTAATGTACAGTGGTTTTTACTACTTGTATTGATTAAGTAAAACATGTTATGAAATCTTCAAAATGCACAAAGAGTCCAATGAGTCATGATTTCTGTAAAACATTTATTAGGTTGACATAGAGGGAGTTGGTAAATGAAATATTATAAAATGGTCTCGGGCATGTGTGAGACCCTTTCCATGGCCCTGGCATGAGATGAAACCATGATGACcaccacaaacaaaaataaaacattttttagaaTTTA

Function

NR:

description
PREDICTED: 40S ribosomal protein S27-like

GO: NA

KEGG:

id description
K02978 RP-S27e, RPS27; small subunit ribosomal protein S27e

RNA

RNA id representative length rna type GC content exon number start site end site
TU131669 False 906 lncRNA 0.39 4 23378750 23380374
XM_039810429.1 True 926 mRNA 0.39 4 23378731 23380375

Neighbor

gene id symbol gene type direction distance location
ccl44 LOC103365223,LOC103463524,LOC102231954,LOC103138454,LOC103397632 coding upstream 43034 23331778 ~ 23335697 (+)
agbl4 agbl4 coding upstream 132416 22816551 ~ 23246315 (+)
bend5 bend5,LOC102785035 coding upstream 187654 23176507 ~ 23191077 (+)
dmrta2 dmrta2 coding upstream 600540 22775008 ~ 22778191 (+)
faf1 faf1,LOC102783815 coding upstream 614643 22698080 ~ 22764088 (+)
si:ch1073-396h14.1 LOC103365213 coding downstream 39569 23419944 ~ 23454783 (+)
fam32a fam32a,LOC103365210 coding downstream 205426 23585801 ~ 23588140 (+)
hdgfl2 LOC103368921 coding downstream 211077 23591452 ~ 23599922 (+)
ap3d1 ap3d1 coding downstream 219941 23600316 ~ 23627747 (+)
LOC120564946 c2cd4c coding downstream 279244 23659619 ~ 23666284 (+)
G97554 NA non-coding upstream 15251 23352840 ~ 23363480 (+)
G97559 NA non-coding upstream 16011 23360058 ~ 23362720 (+)
G97538 NA non-coding upstream 54232 23324259 ~ 23324499 (+)
G97537 NA non-coding upstream 54555 23323972 ~ 23324176 (+)
G97489 NA non-coding upstream 460000 22914516 ~ 22918731 (+)
G97572 NA non-coding downstream 20654 23401029 ~ 23425798 (+)
G97597 LOC103365214,LOC107393172 non-coding downstream 79908 23460283 ~ 23461368 (+)
G97601 NA non-coding downstream 84863 23465238 ~ 23466660 (+)
G97602 NA non-coding downstream 86365 23466740 ~ 23466993 (+)
G97603 NA non-coding downstream 87263 23467638 ~ 23468117 (+)
pole4 NA other upstream 55247 23321464 ~ 23323484 (+)
LOC120565086 NA other upstream 75040 23300806 ~ 23303691 (+)
spata6 spata6 other upstream 96060 23249129 ~ 23282671 (+)
rnf11b rnf11 other upstream 702553 22657480 ~ 22676178 (+)
LOC120566217 NA other upstream 802529 22576129 ~ 22576202 (+)
G97596 lpl,LOC108280930,LOC105906969 other downstream 94407 23474782 ~ 23477818 (+)
cdc34a cdc34,LOC103368917,LOC104923648,LOC103397164,LOC107393183,LOC103156874 other downstream 250744 23631119 ~ 23650513 (+)
cks2 LOC104918474,LOC108230759,LOC102216377,LOC104949087,LOC105011584 other downstream 823966 24204341 ~ 24208141 (+)
LOC120565649 LOC103373964,LOC107081966 other downstream 1368642 24749017 ~ 24765225 (+)
G98012 dmbx1,LOC103373966,LOC108230579 other downstream 1401543 24781918 ~ 24783881 (+)

Expression


Co-expression Network