cdc34a (cdc34,LOC103368917,LOC104923648,LOC103397164,LOC107393183,LOC103156874)


Basic Information

Item Value
gene id cdc34a
gene name cdc34,LOC103368917,LOC104923648,LOC103397164,LOC107393183,LOC103156874
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 23631119 ~ 23650513 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU131789
AGTAGAGGTTACACacgatgcacacacacattagcacAGCTTAGGGATAGTAGTACTTCCTCGTCTGCTTCCGTTTGTCTGCACTGATAACTAATAGCTGGTTGAAAAGATCTCCAAGATCTGTTCCTTCCTTTGGCTTTGAGTGGAACAAAGTGTGTCTGATGGCCAAGTTTCTTGTAGAAAATTTGGCGGAGGAACGGTCGCGCCTTTTTCTGACATCATCAGCAGGGTGGAATGTAACGTCACAGGTCAGATCAGAGTAAAACAAGCAGGGAGCATTTGCAAAGTAGGCTaatttcgtgtgtgtgtgtgtgtgtgtgtgtgtgt
>TU131791
CTTCTGTCTGTGAGCCATGTGTGTGACTTCTGGTTTAGCGGGCTGTTTGAAGCCCTGCCATGCTTCACCTCTGACCTTTCTTGAGCCCCAAGGCTTGTGCTGCACCAAACAGGCAAGTTatccgtttaaaaaaaaaaaagaagctgttcACACTCCCTTGTGCCTTCCCTCCACTCCCTGATATCACAGATCTCAATGACTTGACTGAATGAGCCTGCCTCGGTCAAAGCAGCCAGACATACAAAGGTGGCCGAGGGAGATATTCAAGCTCACAAGGTCTCAGGTGGGGATGCTGTGCAAACGGCCCCCCCacctgaaggaaaaaaaacgtATTCATCGCAGCACCTGTCAGATTTGTCCATGGCGTGAGTGAGAAAGGTGTAAGAACCAACAGCTGAACTGGAAGACTGTAGAATGTAGATCAGAATCCCACAATCGTCCTCTTGACTGCCACGCGGCCTTCAACATATAAGCACGTGCTACTAGTGGCCTGGATGCATtaagaaacagctagctgagcctgctgctgctcctaAAAATccaatgtactgtatttaaaaaaacaacctatgCAGTCAGCGCTTGAACCTACTTAATATGCAGTGCTTTAAACGTGGCAGTAAAGCTGAGCCTTTTCAACAGTCTGACCTGAACTCCAGCTCGACTTTTCCAACCTGTAAGGGCTTTGGACTGACTGCGTCCTTGGTTAGAGATGGACCCGTGTAGTTGTATCtgtcttttatgtttttgtcggTGGTTTGTTATTCTAATTTAGAGTAGCACAAGTCTCCAGAGCGAGCGTGAGATTGTACATCAGCCTTCACCAGAGCTCGCCCCCTAGTGGCGGCTCTGTGTACTGGCTTTGTTTTGGTCCCCCCTCCCTCTGAAATGCTTGACTGGGCCGCAGCCATCTTGACTCACCTTAATCAATGAACCCTGTTACCTCCGATGAGATCAGGTAGCAGTGTGAGTGATTCAGAAGAATGAAAATGGCCTGATGAACATGCAGACTGACGGGGGGGGGATTTGTTTTCAGTCTACGCTGTCAGACGGCCCATTTCGTTTCTTCTCTCCTAACTGCAAGGAGTGCTCTGTTGCACACTTAAGGACCCATCCAACAGTATTTCCGATGAAATTCCCAACCATGTTTCCGTTGTGTGTGCCGACCGTTTATAAGATGTTCTGAGAAGTGTGGAGAAGAAGCAGGAATGGGGATAGGGTTGATCTTTGAGCATGAACAGGAGAATGTTGTTCTTCACTAGCATGCTGTTATGATGTGTTTGTGGTTTTAGATCTGCTATAAGGgtcggggggggaggggggcgttGTGTCCTGAGACAAAGGTCTTCTACTCAATTTTATCTAAACTGTTGCATTATGAATGGGCTGAGGGTTGtctggttttttttgttgttttttttgggcgggcttcttttactgttttgatgtaatcttttatttccaaattgtgGTGCGAGCTGCGATGTTTTCTGTCTTCTATGTATTAAGTGCTGCGAATATTGACCTGATTGTTAAAAACCCAGGATTGTTCATGGAAGGACACGACTAAATGTACCAACTTATTATACACGAATATCATAGCAGCAGAAAATTTGTGCAGAACCAAATTGACACAGCACACTACACAGTAATTGTTCCAGCCTTCTATCAAGCCCAGAATGCTCAGAAAGGAGTTCTCAATACTCAGTAATTGACTGATTTCCATCACACAACCTATGAATGATCCTTCTCCCCTCTGTTTTGAGGGTTTGGGGTGAATggaatttgaatttttttttttttttttttttgtcaaactactGTTACTTTTATCGTCTTTCCTCCCCACTCGTCCCCCAGTTCTCTGAGCTCTGATTGGTGGCAGCATCACTGAGGGTAAAACCCAGCATATAATTACAGAAAACTACAAGAACctcaggaaaaaaacaactaccaactaacaaacaaaacaaatccttTTCCAGCGGAGTGAATCTGACCCCGGGGAGTCTCACTTTTTGGCTTCAAGGGACTGTTTACAATCTCTACCTTGATATGCACATGTGGATATTTGACGATCacttgatgtttgtttttttcttgtttatatttcc
>XM_039810423.1
AAAACAGTAGGTTTAGATGGTCGTTAATAACTAGCTAGGGCTCCCCGGGATTGTTCACAACAGAGGAAGCCACACCAGCTCTGACCAAATAAAGCCCCGTCGCGATTTTTAGATCCTGTTTTGAAACCATACTAACGGAAACTAACGTTAACGCGTTCCTGTGCGAAGGGCTTCGTTTTTCTCCTGATAATAGCTAACGTTATTGTTTGTACCGAGCTAGCTTTGTCCTTTGCAGTCACAGCTGTGGTGTGTTGCTGATATATTTATACAAATCGTTGTGGAATATGGCTCAGCATGGACATCATGTAGCCAGTTCCCAAAAAGCACTAATGCTGGAGATGAAAAGTCTCCAAGATGAGCCAGTCGAAGGGTTCAAAATAACTTTGGTGGACGAGTCGGACATGTACAACTGGGAAGTAGCGATATTCGGACCCCCAAATACACACTACGAGGGTGGTTATTTTAAGGCTCGGATCAAGTTCCCCGTCGACTACCCGTACTCTCCACCTGCTTTCCGATTCCTCACCAAAATGTGGCATCCCAACATTTATGAGAACGGTGATGTATGCATCTCTATCCTGCACCCACCGGTGGACGACCCACAGAGCGGAGAGTTGCCTTCAGAGAGGTGGAACCCCACACAGAACGTCAGGACCATCCTGCTCAGCGTGATCTCTTTGCTGAACGAGCCCAACACTTTCTCCCCGGCCAACGTGGACGCATCCGTCATGTACCGCAAGTGGAGGGACAGCAAGGGCAAGGACCGAGAATACATCGAGATCATCAGGAAGCAGGTGGTGGCTACCAAAGCTGAAGCGGAGCGGGACGGCGTCAAGGTTCCCATCACCTTGGACGAGTACTGTGTCCGCACCCAAGTGCCGCCCACAGACGACGGCTCCAACCTCTTGTACGATGACTACTACGACGACGAGGAACTGGAGGAAGACGACGAGGACGACAACGAGGACTGTTGCTATGACGACGATGACTCAGGCACCGAGGACTCCTGACCATGCCCTTCCCGCGATGTCTCCCTCTCGTCCCTGACCGGTCCCCGGCCTCACCCCCtcgccacacagacacacacacacacacacacacacacctccctttCTTGTCATGGACTGAACTTTGACTCCCTGCCCCCTCTTCCTCCTGAATCAACCCCTCATCCTCCTCACTTAGCACAGCCCCCGTCCACCTTCTGTCACATGTGCAGTCACAATATGCACACTAAAACCTGATGCATCGAAGAGAAGAAAGCTACACAGTTGGTTTTGTTTCTtacatgtttctctttttttttcttttttttttttttcttttctttttttcatttgttgtcTGAGTAGAGGTTACACacgatgcacacacacattagcacAGCTTAGGGATAGTAGTACTTCCTCGTCTGCTTCCGTTTGTCTGCACTGATAACTAATAGCTGGTTGAAAAGATCTCCAAGATCTGTTCCTTCCTTTGGCTTTGAGTGGAACAAAGTGTGTCTGATGGCCAAGTTTCTTGTAGAAAATTTGGCGGAGGAACGGTCGCGCCTTTTTCTGACATCATCAGCAGGGTGGAATGTAACGTCACAGGTCAGATCAGAGTAAAACAAGCAGGGAGCATTTGCAAAGTAGGCTaatttcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttgaaaagtCACTTCTGTCTGTGAGCCATGTGTGTGACTTCTGGTTTAGCGGGCTGTTTGAAGCCCTGCCATGCTTCACCTCTGACCTTTCTTGAGCCCCAAGGCTTGTGCTGCACCAAACAGGCAAGTTatccgtttaaaaaaaaaaaagaagctgttcACACTCCCTTGTGCCTTCCCTCCACTCCCTGATATCACAGATCTCAATGACTTGACTGAATGAGCCTGCCTCGGTCAAAGCAGCCAGACATACAAAGGTGGCCGAGGGAGATATTCAAGCTCACAAGGTCTCAGGTGGGGATGCTGTGCAAACGGCCCCCCCacctgaaggaaaaaaaacgtATTCATCGCAGCACCTGTCAGATTTGTCCATGGCGTGAGTGAGAAAGGTGTAAGAACCAACAGCTGAACTGGAAGACTGTAGAATGTAGATCAGAATCCCACAATCGTCCTCTTGACTGCCACGCGGCCTTCAACATATAAGCACGTGCTACTAGTGGCCTGGATGCATtaagaaacagctagctgagcctgctgctgctcctaAAAATccaatgtactgtatttaaaaaaacaacctatgCAGTCAGCGCTTGAACCTACTTAATATGCAGTGCTTTAAACGTGGCAGTAAAGCTGAGCCTTTTCAACAGTCTGACCTGAACTCCAGCTCGACTTTTCCAACCTGTAAGGGCTTTGGACTGACTGCGTCCTTGGTTAGAGATGGACCCGTGTAGTTGTATCtgtcttttatgtttttgtcggTGGTTTGTTATTCTAATTTAGAGTAGCACAAGTCTCCAGAGCGAGCGTGAGATTGTACATCAGCCTTCACCAGAGCTCGCCCCCTAGTGGCGGCTCTGTGTACTGGCTTTGTTTTGGTCCCCCCTCCCTCTGAAATGCTTGACTGGGCCGCAGCCATCTTGACTCACCTTAATCAATGAACCCTGTTACCTCCGATGAGATCAGGTAGCAGTGTGAGTGATTCAGAAGAATGAAAATGGCCTGATGAACATGCAGACTGACGGGGGGGGGATTTGTTTTCAGTCTACGCTGTCAGACGGCCCATTTCGTTTCTTCTCTCCTAACTGCAAGGAGTGCTCTGTTGCACACTTAAGGACCCATCCAACAGTATTTCCGATGAAATTCCCAACCATGTTTCCGTTGTGTGTGCCGACCGTTTATAAGATGTTCTGAGAAGTGTGGAGAAGAAGCAGGAATGGGGATAGGGTTGATCTTTGAGCATGAACAGGAGAATGTTGTTCTTCACTAGCATGCTGTTATGATGTGTTTGTGGTTTTAGATCTGCTATAAGGgtcggggggggaggggggcgttGTGTCCTGAGACAAAGGTCTTCTACTCAATTTTATCTAAACTGTTGCATTATGAATGGGCTGAGGGTTGtctggttttttttgttgttttttttgggcgggcttcttttactgttttgatgtaatcttttatttccaaattgtgGTGCGAGCTGCGATGTTTTCTGTCTTCTATGTATTAAGTGCTGCGAATATTGACCTGATTGTTAAAAACCCAGGATTGTTCATGGAAGGACACGACTAAATGTACCAACTTATTATACACGAATATCATAGCAGCAGAAAATTTGTGCAGAACCAAATTGACACAGCACACTACACAGTAATTGTTCCAGCCTTCTATCAAGCCCAGAATGCTCAGAAAGGAGTTCTCAATACTCAGTAATTGACTGATTTCCATCACACAACCTATGAATGATCCTTCTCCCCTCTGTTTTGAGGGTTTGGGGTGAATggaatttgaatttttttttttttttttttttgtcaaactactGTTACTTTTATCGTCTTTCCTCCCCACTCGTCCCCCAGTTCTCTGAGCTCTGATTGGTGGCAGCATCACTGAGGGTAAAACCCAGCATATAATTACAGAAAACTACAAGAACctcaggaaaaaaacaactaccaactaacaaacaaaacaaatccttTTCCAGCGGAGTGAATCTGACCCCGGGGAGTCTCACTTTTTGGCTTCAAGGGACTGTTTACAATCTCTACCTTGATATGCACATGTGGATATTTGACGATCacttgatgtttgtttttttcttgtttatatttcctttttttcttatgGTTTGTAAATCTATTTAAAATCTGAAATAAAGATCTTTATTAGA

Function

symbol description
cdc34 Enables ubiquitin conjugating enzyme activity. Involved in cellular protein metabolic process; cellular response to interferon-beta; and negative regulation of cAMP-mediated signaling. Located in cytosol and nuclear speck.

NR:

description
PREDICTED: ubiquitin-conjugating enzyme E2 R2-like

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0016881 acid-amino acid ligase activity molecular_function

KEGG:

id description
K02207 UBE2R, UBC3, CDC34; ubiquitin-conjugating enzyme E2 R

RNA

RNA id representative length rna type GC content exon number start site end site
TU131789 False 327 lncRNA 0.45 1 23647873 23648199
TU131791 False 2114 lncRNA 0.45 1 23648343 23650456
XM_039810423.1 True 3988 mRNA 0.46 5 23631119 23650513

Neighbor

gene id symbol gene type direction distance location
ap3d1 ap3d1 coding upstream 3372 23600316 ~ 23627747 (+)
hdgfl2 LOC103368921 coding upstream 31197 23591452 ~ 23599922 (+)
fam32a fam32a,LOC103365210 coding upstream 42979 23585801 ~ 23588140 (+)
si:ch1073-396h14.1 LOC103365213 coding upstream 176336 23419944 ~ 23454783 (+)
ccl44 LOC103365223,LOC103463524,LOC102231954,LOC103138454,LOC103397632 coding upstream 295422 23331778 ~ 23335697 (+)
LOC120564946 c2cd4c coding downstream 9106 23659619 ~ 23666284 (+)
LOC120565386 LOC104923650,LOC102308979,LOC100710383,LOC103369973,LOC102790487 coding downstream 139573 23790086 ~ 23835654 (+)
tle5 aes,LOC108430095 coding downstream 186157 23836670 ~ 23880166 (+)
tle2b LOC103463550,LOC105936873,LOC103142606,LOC108230720,LOC101484064,LOC102310211,LOC101064354 coding downstream 263435 23913948 ~ 23998384 (+)
s1pr3a LOC104942240,LOC103398206 coding downstream 483151 24133664 ~ 24137514 (+)
G97615 NA non-coding upstream 128541 23500976 ~ 23502578 (+)
G97613 safb2,LOC102778639,LOC102201904,LOC103365207 non-coding upstream 133237 23494051 ~ 23497882 (+)
G97605 NA non-coding upstream 157478 23473272 ~ 23473641 (+)
G97603 NA non-coding upstream 163002 23467638 ~ 23468117 (+)
G97602 NA non-coding upstream 164126 23466740 ~ 23466993 (+)
G97657 NA non-coding downstream 54423 23704936 ~ 23705284 (+)
G97679 NA non-coding downstream 61584 23712097 ~ 23713463 (+)
G97702 NA non-coding downstream 347888 23998401 ~ 24000222 (+)
G97728 NA non-coding downstream 440030 24090543 ~ 24091319 (+)
G97788 odf3l2,LOC104949085 non-coding downstream 557716 24208229 ~ 24209290 (+)
G97596 lpl,LOC108280930,LOC105906969 other upstream 153301 23474782 ~ 23477818 (+)
LOC120565078 LOC104955513,LOC104923635,LOC103365215,LOC100690174 other upstream 250744 23378731 ~ 23380375 (+)
pole4 NA other upstream 307635 23321464 ~ 23323484 (+)
LOC120565086 NA other upstream 327428 23300806 ~ 23303691 (+)
spata6 spata6 other upstream 348448 23249129 ~ 23282671 (+)
cks2 LOC104918474,LOC108230759,LOC102216377,LOC104949087,LOC105011584 other downstream 553828 24204341 ~ 24208141 (+)
LOC120565649 LOC103373964,LOC107081966 other downstream 1098504 24749017 ~ 24765225 (+)
G98012 dmbx1,LOC103373966,LOC108230579 other downstream 1131405 24781918 ~ 24783881 (+)
elovl1b LOC106963699,LOC101078639 other downstream 1201774 24852287 ~ 24873916 (+)
G98194 NA other downstream 1882312 25532825 ~ 25547089 (+)

Expression


Co-expression Network