G97789


Basic Information

Item Value
gene id G97789
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 24211860 ~ 24213859 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU131964
TCTCGTTTGTTTTAAAAAGCACACATTTTGATATGAGGAGGGGCTCAATGAATCAAATTTGGTCCATTTACAGAAATTCAAAACGTCATTCTTAATTTTTAAGTTGATTGCTTAACAAATCaaaatttaacaaaaaacaaaaatagcttATGAACTGTACAATCAAATCGTAAGGTAGGTAAGGTGAAAGGTGACTTGAGAGTAGATGATGTTGGTGCCTTGGTACGACTGGTGTGTCCTGGTGGACCAGTTTGAGTCGGTCAGAGACCTTTGTTACATGTCAGTCCGCTTCTCCATCTTTATGTTTCCTGTCAACCTCTACTGTGCTGTCTAATAAAAGCAAACGCCCATAGAAAACATTTGAGCTTATGTTTCCGTAAAGCATATGGTTAGCATATGTCTTTTTCCAGCAGGATACCAGCACAGGAATTTCATCAAACATTTCAATAATTGGGTTAAAGCTTGCtatgaaagaagaagaaaaaaaaaaaaagcctttgacACAACATATCTGTGTTTGAACACAAAGAACCACAAGGGCAGAAAGTTGACTGTATTGCCGGGCAttgaccaaaaaaataaaattaaaatgatatGACCTCTAGCTACAAATAAATACCACAGatagaaaatataacaaaatattttgCTTAAAGTCAGGTGTAATTACAAACATAAATACTTGATTATTTCTTCTAGTGATTATAAAAGGCAGTACAGTGAATAAAAAAAGACGCTATGGTGCCTATTGGTGACCAGGTGTctggaggaagaaaaaagaaaatagtctgGAGGACACTACCTTAATAGCTGTGTCATACACTGTCACatccaaccacacacacaaatgtataaATGCATCCACACAGACTCCATTCAAAATGatcacacacgcgcgcacacacaacacacacaaaatcatctCTTCCTTCCAGACTGAACATGTCCCAAGACTCTCTTCTCTTTCCATTCACTAGCATATTCACAAATAATGTACAATTTGGAGGTGGGTATGGCTTCACTCTGTGAGCGTTTTCATCGCTCAGGGGTGTTTTTTGTGTCCAGTGTGGGTAGCTGGGTATCTGTTGGCAGGAGCACCTTTTGCTCTACATCCTCCCCATCTTCAGGAAGGTCAAAATGGTCCCCTCCCTCTGCATCAGCAAGGAAAGGCTCCGAATCTGGGTCGTATTCATAGGAGTAGTAGGACACCTCTGCCATGGACCCCTGCTCCTCTTCACCTGGAGAGATCACGGGTGGGGTAGAAAAATGGAGACACAAAGTGGTTGATGACAATATCTCATATACAAAGAAGAAGTACTTCATTTAGTTGCCAAAGAGTAAATAACTGGTTGTAATGGAGACCTAAaaaggtaccctg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU131964 True 1378 lncRNA 0.39 2 24211860 24213859

Neighbor

gene id symbol gene type direction distance location
ankrd24 ankrd24,LOC106918341,LOC106947862,LOC102780339,LOC103142601 coding upstream 28832 24168358 ~ 24183028 (+)
s1pr3a LOC104942240,LOC103398206 coding upstream 74346 24133664 ~ 24137514 (+)
tle2b LOC103463550,LOC105936873,LOC103142606,LOC108230720,LOC101484064,LOC102310211,LOC101064354 coding upstream 213476 23913948 ~ 23998384 (+)
tle5 aes,LOC108430095 coding upstream 331694 23836670 ~ 23880166 (+)
LOC120565386 LOC104923650,LOC102308979,LOC100710383,LOC103369973,LOC102790487 coding upstream 376206 23790086 ~ 23835654 (+)
foxe3 foxe3,LOC104952243,LOC102794361 coding downstream 64537 24278396 ~ 24281064 (+)
foxd2 LOC104918470,LOC103372816,LOC100707784 coding downstream 73245 24287104 ~ 24288689 (+)
scyl3 scyl3 coding downstream 267844 24481703 ~ 24488751 (+)
sele NA coding downstream 301575 24515434 ~ 24519540 (+)
LOC120565835 NA coding downstream 306775 24520634 ~ 24524358 (+)
G97788 odf3l2,LOC104949085 non-coding upstream 2570 24208229 ~ 24209290 (+)
G97728 NA non-coding upstream 120541 24090543 ~ 24091319 (+)
G97702 NA non-coding upstream 211638 23998401 ~ 24000222 (+)
G97679 NA non-coding upstream 498397 23712097 ~ 23713463 (+)
G97657 NA non-coding upstream 506576 23704936 ~ 23705284 (+)
G97807 sac3d1 non-coding downstream 40611 24254470 ~ 24256081 (+)
LOC120565067 NA non-coding downstream 95750 24309609 ~ 24365175 (+)
G97896 LOC104918463,LOC104952282 non-coding downstream 298112 24511971 ~ 24513033 (+)
G97938 NA non-coding downstream 424607 24638466 ~ 24642085 (+)
G98014 LOC106904844,LOC106963772,LOC102314236,LOC103463589,LOC106513892,LOC102207185,LOC100706092 non-coding downstream 570937 24784796 ~ 24785342 (+)
cks2 LOC104918474,LOC108230759,LOC102216377,LOC104949087,LOC105011584 other upstream 3719 24204341 ~ 24208141 (+)
cdc34a cdc34,LOC103368917,LOC104923648,LOC103397164,LOC107393183,LOC103156874 other upstream 561347 23631119 ~ 23650513 (+)
G97596 lpl,LOC108280930,LOC105906969 other upstream 734042 23474782 ~ 23477818 (+)
LOC120565078 LOC104955513,LOC104923635,LOC103365215,LOC100690174 other upstream 831485 23378731 ~ 23380375 (+)
pole4 NA other upstream 888376 23321464 ~ 23323484 (+)
LOC120565649 LOC103373964,LOC107081966 other downstream 535158 24749017 ~ 24765225 (+)
G98012 dmbx1,LOC103373966,LOC108230579 other downstream 568059 24781918 ~ 24783881 (+)
elovl1b LOC106963699,LOC101078639 other downstream 638428 24852287 ~ 24873916 (+)
G98194 NA other downstream 1318966 25532825 ~ 25547089 (+)
slc35a3a slc35a3,LOC101471768,LOC102790943,LOC100705874,LOC108230529,LOC103354215,LOC106515047 other downstream 1516366 25730225 ~ 25738789 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G2207950 NA non-coding NC_050570.1 CM025857.1 17918220 ~ 17919077 (-)