LOC120565749


Basic Information

Item Value
gene id LOC120565749
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 25786325 ~ 25837747 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU132636
GTGAAGTCAGAGGAATCATGGGAAGTTAACTGGCTTAGACCAAACTTTTTAGAACAAGAATCCTCAGACTTTTTGTTGTTTCCTCATACCAGGTCAATGCCTCAAGCTGCGCGGATAGACGGGGCACATTTGTGTCTTTGACTCCCTTTTCACCCACCACACAGGAGGTGAAGGTTGGATCAGAGCTCTGATTTGTCTGCCATACATTCAGACACTTCAGGTAAAGAGAGAAAAATTGCCTACTGTAGTGCCACTTCAGTAACTTGACCGGGCCCGGCCTTCGCTCTGCGTGCATTGAATGAGTTTGGCAGCAGCTGGGCTCCCGTTGATGATGAGCTGGAGAGAGGACAGTAGAGAAAGacGCCCCTGATTCTGCATGAGGAGAGCACATTTGAAAAGCTTTTATGACCTGGCTACTGCGTCACATCAACTGCTAGAAGAACGTACACAAAAATAAGGCTGAACCCGGCTGATCTGTTCAATCACCCAGGAGCGCTGAGGCAGGACCCTGTAAAAGGAGTTCGGACCGAAAGATCACACGTTTGGAAAAATCTGACTTCCAGCCAGGAGACGGATTTGACTCATCATGATCAGATAAAGTGAAAATACTCAAAGCTGAGGCCGATGTCGGGGCGGAGCAAAGACCTAACGGAGGTACTGGATGCCTGCACGTCTCGTGGACCCTCACTGCTGGAGCTGTTGCATAACATGAAAGTCTTTAAGAACTGCACTCTGCAGACTGCTACAGAGCAACAAGACTTTAACACACAATTCAGGGTAAAGAAGGCCAGAGATGGCTTAGTGGTTCCTGGCTTTGCAACTACATTGCTTGCCTGAGTGAAAGAAAGGCCacccaaaagagaaaaagacagagagagagaagaaggatAAAACAGCACTAGCTTACCTCTAGGTTCCTCCCAAAATTGCTATGGGTTGCCAAAATAAGATGTTCCCATACAtctaaactgcattctcaattgCATTTTGAGGGAAAAGAATATTCTCCGCCGGATTATGTTTGTTTCAACCCGTCCTTGTACCAGCGACAGGCGCACGGTGTGAAACGTTTGCAGTTTTAAACATGTGCTTAGCAttgtgaattgaaacaaaataacttaggttaggttaaggaaaagatcatggtttgggttacgCTTGTCAAAAAGAAATCTGGGTTATTCAAAAGTAGACAGGGCTGTTCTGTAAGGCGTGGTTTCTATTACTTGAAATTGTATTGACAGCTATTACTTTTCATCACTATTATTGTCCTTAACTTTTGACGTCCAAAATGTAGAACTTTATCAGATGGCATTacagtttttacattttacctCAGTCTGAAGTACCATCTTAAGTATCTTTGTTAGTCAGCCCGGCAAGTTTCTTCGCTATTGCAATGTCTAATTATTTAGTTTGAGCAGGCTTGATCTTTTTAATGCAAGTAAATATGCCAGTCAAAACGTTAGCAATGCAATAAAATAACTGAAGCTTTTCAAAATATGTGACCATCTTCTAATATGTGACCTATGCTGATTCTATGTTTTTGAATTATTAactgtcacaaaaaaaaatacttttccaatgttttttttcttttttacattagaT
>XR_005640280.1
TCAGAGGAATCATGGGAAGTTAACTGGCTTAGACCAAACTTTTTAGAACAAGAATCCTCAGACTTTTTGTTGTTTCCTCATACCAGGTCAATGCCTCAAGCTGCGCGGATAGACGGGGCACATTTGTGTCTTTGACTCCCTTTTCACCCACCACACAGGAGGTGAAGGTTGGATCAGAGCTCTGATTTGTCTGCCATACATTCAGACACTTCAGGTAAAGAGAGAAAAATTGCCTACTGTAGTGCCACTTCAGTAACTTGACCGGGCCCGGCCTTCGCTCTGCGTGCATTGAATGAGTTTGGCAGCAGCTGGGCTCCCGTTGATGATGAGCTGGAGAGAGGACAGTAGAGAAAGacGCCCCTGATTCTGCATGAGGAGAGCACATTTGAAAAGCTTTTATGACCTGGCTACTGCGTCACATCAACTGCTAGAAGAACGTACACAAAAATAAGGCTGAACCCGGCTGATCTGTTCAATCACCCAGGAGCGCTGAGGCAGGACCCTGTAAAAGGAGTTCGGACCGAAAGATCACACGTTTGGAAAAATCTGACTTCCAGCCAGGAGACGGATTTGACTCATCATGATCAGATAAAGTGAAAATACTCAAAGCTGAGGCCGATGTCGGGGCGGAGCAAAGACCTAACGGAGGTACTGGATGCCTGCACGTCTCGTGGACCCTCACTGCTGGAGCTGTTGCATAACATGAAAGTCTTTAAGAACTGCACTCTGCAGACTGCTACAGAGCAACAAGACTTTAACACACAATTCAGGGTAAAGAAGGCCAGAGATGGCTTAGTGGTTCCTGGCTTTGCAACTACATTGCTTGCCTGAGTGAAAGAAAGGCCacccaaaagagaaaaagacagagagagagaagaaggatAAAACAGCACTAGCTTACCTCTAGGTTCCTCCCAAAATTGCTATGGGTTGCCAAAATAAGATGTTCCCATACAtctaaactgcattctcaattgCATTTTGAGGGAAAAGAATATTCTCCGCCGGATTATGTTTGTTTCAACCCGTCCTTGTACCAGCGACAGGCGCACGGTGTGAAACGTTTGCAGTTTTAAACATGTGCTTAGCAttgtgaattgaaacaaaataacttaggttaggttaaggaaaagatcatggtttgggttacgCTTGTCAAAAAGAAATCTGGGTTATTCAAAAGTAGACAGGGCTGTTCTGTAAGGCGTGGTTTCTATTACTTGAAATTGTATTGACAGCTATTACTTTTCATCACTATTATTGTCCTTAACTTTTGACGTCCAAAATGTAGAACTTTATCAGATGGCATTacagtttttacattttacctCAGTCTGAAGTACCATCTTAAGTATCTTTGTTAGTCAGCCCGGCAAGTTTCTTCGCTATTGCAATGTCTAATTATTTAGTTTGAGCAGGCTTGATCTTTTTAATGCAAGTAAATATGCCAGTCAAAACGTTAGCAATGCAATAAAATAACTGAAGCTTTTCAAAATATGTGACCATCTTCTAATATGTGACCTATGCTGATTCTATGTTTTTGAATTATTAactgtcacaaaaaaaaatacttttccaatgttttttttcttttttacattagaTGAATCAAATTTCTTGGATATTGATCAATTCAAAGTCACAATTACAACAAATCACAACCCATTGAGATGACCCTAATGATGTCATCATGGTCACCTTGGCTTATCTTgggacaattttttttaaggGCAGCCTACATTACAAACAGGAGCTGTAGGGTTTGACAGAGGACGGGTCTTATTAAGATGCAAATTAGTCTCATTATGGAAAATGTAGGATGCAGGGTTTTTGGAGCTTGATGCTAAGGCTCATACTAAGGACTAAATTAAGAAAATATCGGCCTCTGCTGATTCGATtttgatcatttaaaaaaataaatgtctctCGTGAGTTCCCTAACTTCATAGAAGTGCAATTCAAAATTGCCGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU132636 False 1611 lncRNA 0.42 5 25786325 25837380
XR_005640280.1 True 1972 lncRNA 0.41 5 25786331 25837747

Neighbor

gene id symbol gene type direction distance location
tmem59l tmem59l,LOC104948969 coding upstream 1887 25769993 ~ 25784438 (+)
rex1bd clg23h19orf60,LOC104918420,LOC103354213,LOC102791516,LOC102205217 coding upstream 30669 25748875 ~ 25755656 (+)
notch2 LOC104948964,LOC103354216 coding upstream 56849 25678536 ~ 25729476 (+)
sec22bb LOC104918424,LOC104948961,LOC100705437,LOC106584381,LOC103354218,LOC106613829 coding upstream 122621 25653862 ~ 25663704 (+)
npl npl coding upstream 172912 25601881 ~ 25613413 (+)
ssbp4 ssbp4,LOC102228095 coding downstream 3055 25840802 ~ 25937832 (+)
fkbp8 fkbp8 coding downstream 101001 25938748 ~ 25951039 (+)
ell ell,LOC102793352 coding downstream 113983 25951730 ~ 25983878 (+)
amh NA coding downstream 189528 26027275 ~ 26031063 (+)
org NA coding downstream 213164 26050911 ~ 26053621 (+)
G98280 NA non-coding upstream 45776 25739131 ~ 25740549 (+)
G98196 NA non-coding upstream 177934 25558113 ~ 25608391 (+)
LOC120565050 NA non-coding upstream 265038 25520872 ~ 25521287 (+)
G98188 NA non-coding upstream 270583 25515050 ~ 25515742 (+)
G98186 NA non-coding upstream 274073 25511856 ~ 25512252 (+)
G98312 NA non-coding downstream 46769 25884516 ~ 25925050 (+)
G98363 NA non-coding downstream 297490 26135237 ~ 26136630 (+)
G98384 NA non-coding downstream 354121 26191868 ~ 26194089 (+)
G98494 NA non-coding downstream 660285 26498032 ~ 26498261 (+)
G98500 NA non-coding downstream 673437 26511184 ~ 26511527 (+)
slc35a3a slc35a3,LOC101471768,LOC102790943,LOC100705874,LOC108230529,LOC103354215,LOC106515047 other upstream 47536 25730225 ~ 25738789 (+)
G98194 NA other upstream 239236 25532825 ~ 25547089 (+)
elovl1b LOC106963699,LOC101078639 other upstream 912409 24852287 ~ 24873916 (+)
G98012 dmbx1,LOC103373966,LOC108230579 other upstream 1002444 24781918 ~ 24783881 (+)
LOC120565649 LOC103373964,LOC107081966 other upstream 1021100 24749017 ~ 24765225 (+)
dot1l dot1l,LOC102793654 other downstream 153759 25991506 ~ 26019371 (+)
oaz1a oaz1,LOC104950707 other downstream 197004 26034751 ~ 26039866 (+)
zbtb7a zbtb7a other downstream 445305 26283052 ~ 26295382 (+)
LOC120565098 NA other downstream 501796 26339543 ~ 26342293 (+)
micos13 LOC104918748,LOC103371279,LOC104964520,LOC106536194 other downstream 953982 26791729 ~ 26796287 (+)

Expression


Co-expression Network