LOC120565098


Basic Information

Item Value
gene id LOC120565098
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 26339543 ~ 26342293 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU132812
GAAAACATTGGTGTCAATGGGTGTAGCTAGTAAGAACTACAACCGAGAGGTCACGATGGTCcagaaaatactaaataaattggtcGGTACCAAGTACATTACTATTCTAAGGACGTGGGTACCAAATATGGCTGCCTGGGGAACAGTTGGTGGAGTGGCGCTCGTTCACTTCACCGACTGGCGATTGGTCCTGGACTATGTGCCATACATTAAAGGGAAGTTCAGCAAGGATGAGTAAAGTCACACAAAACGAAATTGACCAGGGCTTGGGAATGGGCACATGGGTGGATTGCTTACACAAGCAAGCTTAAGTATGATGCCCTGGCTCAACAATCAGTCACCGAGGGCTTGTTAGGAGTTTGGACTATGAGATGCACTCTGTATAAATGCTGTTTTTGATCCATTATTATTTAATGTGCATAAATCTTTATTTGCTCCAATTTGTCCAGTTATTCTGCAAAATGCCAACTATTAAAAAGTTTTGTTTA
>TU132817
GAAAACATTGGTGTCAATGGGTGTAGCTAGTAAGAACTACAACCGAGAGGTCACGATGGTCcagaaaatactaaataaattggtcGGTACCAAGTACATTACTATTCTAAGGACGTGGGTACCAAATATGGCTGCCTGGGGAACAGTTGGTGGAGTGGCGCTCGTTCACTTCACCGACTGGCGATTGGTCCTGGACTATGTGCCATACATTAAAGGGAAGTTCAGCAAGGATGAGTAAAGTCACACAAAACGAAATTGACCAGGGCTTGGGAATGGGCACATGGGTGGATTGCTTACACAAGCAAGCTTAAGTATGATGCCCTGGCTCAACAATCAGTCACCGAGGGCTTGTTAGGAGTTTGGACTATGAGATGCACTCTGTATAAATGCTGTTTTTGATCCATTATTATTTAATGTGCATAAATCTTTATTTGCTCCAATTTGTCCAGTTATTCTGCAAAATGCCAACTATTAAAAAGTTTTGTTTAAATTGTTTGCTGAGAGTTTGTTTTTATCTATTTTGTGTTCAATGCTGATTTACTTTAATTTTGCATGGAGCAGTTTTGCTTTTTTACAC
>TU132823
GAAAACATTGGTGTCAATGGGTGTAGCTAGTAAGAACTACAACCGAGAGGTCACGATGGTCcagaaaatactaaataaattggtcGGTACCAAGTACATTACTATTCTAAGGACGTGGGTACCAAATATGGCTGCCTGGGGAACAGTTGGTGGAGTGGCGCTCGTTCACTTCACCGACTGGCGATTGGTCCTGGACTATGTGCCATACATTAAAGGGAAGTTCAGCAAGGATGAGTAAAGTCACACAAAACGAAATTGTGAGTGTATTGTTATTATAACCAACACTTGTGTAACTGAGTTTTTCTTCACACACTTTGTTTGCAATGTGCAGTTGGATTGCTCATTAGCTTTAGCCCCACCCATGTACTCATGATAAGATGCAGACAGGTGTTAGGCCATGCCAGGTGTAGGAACTGAACATTCAAGTAAACACAATTGAGTATTGATTAAAGTTTCTGTCACCTTGCATACACTTGGCACTCAACTCATGCATCTGTAAAAGCAACCTCATACTGAGGCCAGAAATCCCCGCTATTCGAAAACATCTGTAGTGCTCACTAACAAAAGCTTATTGAAGGATAAAGGCCATAGAGTTCTTGTAGCTCTTGTAAGCTTGTTAAGATGACAACTGTGCAGACATAAAGGCTTCATGCCTCTAATCTGAAAGCTTTGCAAAAGGGTCAGATTAGTTTTAGAATAGAAACCGAGTCAATTTATGACAAAATAAAGGTTTAGAAAAAGTATACATTGAGCAGAGCTGCCCCGACAtatttattcatatatatattatttttttcactctgttcaTAATTatgaataatgtgacatttttggTACTGGCCATTTGTGCTTTCCTACAATAATCAAGTATAATATCAGTATTATAATACTTATATTGCAATCTAAATCCCAGGTAATATCCATGATACCCATTCTGAAATCACACCACAGACATTATATTGATATTTCCAAGCCCTATTAAAATTTATACACCTTCAGAGCCCTCCTCACCATCCCGAACCCACAGCCACTTCCACCTTACCCCTTTAACCCCTACTTGGATGTGGTCTTGTCAGAGAGACAAGGAAGGATGTGCTTTTCTTACACACTGATATGTTCATGTACAATTTGCTAACGAATGGGCTGTGTGTCTTGCCTACAGGACCAGGGCTTGGGAATGGGCACATGGGTGGATTGCTTACACAAGCAAGCTTAAGTATGATGCCCTGGCTCAACAATCAGTCACCGAGGGCTTGTTAGGAGTTTGGACTATGAGATGCACTCTGTATAAATGCTGTTTTTGATCCATTATTATTTAATGTGCATAAATCTTTATTTGCTCCAATTTGTCCAGTTATTCTGCAAAATGCCAACTATTAAAAAGTTTTGTTTA
>XM_039810486.1
GCCCAGGGTCCTTAACTGCCATCATTGAGAAAACATTGGTGTCAATGGGTGTAGCTAGTAAGAACTACAACCGAGAGGTCACGATGGTCcagaaaatactaaataaattggtcGGTACCAAGTACATTACTATTCTAAGGACGTGGGTACCAAATATGGCTGCCTGGGGAACAGTTGGTGGAGTGGCGCTCGTTCACTTCACCGACTGGCGATTGGTCCTGGACTATGTGCCATACATTAAAGGGAAGTTCAGCAAGGATGAGTAAAGTCACACAAAACGAAATTGACCAGGGCTTGGGAATGGGCACATGGGTGGATTGCTTACACAAGCAAGCTTAAGTATGATGCCCTGGCTCAACAATCAGTCACCGAGGGCTTGTTAGGAGTTTGGACTATGAGATGCACTCTGTATAAATGCTGTTTTTGATCCATTATTATTTAATGTGCATAAATCTTTATTTGCTCCAATTTGTCCAGTTATTCTGCAAAATGCCAACTATTAAAAAGTTTTGTTTAAATTGT

Function

GO:

id name namespace
GO:0006091 generation of precursor metabolites and energy biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0015980 energy derivation by oxidation of organic compounds biological_process
GO:0045333 cellular respiration biological_process
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0070469 respirasome cellular_component

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05016 Huntington disease
ko04932 Non-alcoholic fatty liver disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU132812 False 488 lncRNA 0.42 3 26339571 26342204
TU132817 False 577 lncRNA 0.40 3 26339571 26342293
TU132823 True 1393 lncRNA 0.39 2 26339571 26342204
XM_039810486.1 False 522 mRNA 0.42 3 26339543 26342210

Neighbor

gene id symbol gene type direction distance location
tcf3b tcf3 coding upstream 333 26306622 ~ 26339210 (+)
map2k2a map2k2 coding upstream 71047 26258304 ~ 26268496 (+)
pias4a pias4,LOC102797537 coding upstream 82096 26244296 ~ 26257447 (+)
atp8b3 LOC108230572,LOC103354223,LOC102796064,LOC102293201 coding upstream 149621 26143887 ~ 26189922 (+)
lingo3a lingo3,LOC102210007,LOC101476815,LOC102795762 coding upstream 204380 26097785 ~ 26135163 (+)
mbd3b LOC103354193,LOC101480296,LOC101063908,LOC104920733,LOC108230843,LOC105938962,LOC103399996 coding downstream 149 26342442 ~ 26350427 (+)
si:dkey-110c1.10 LOC100701936,LOC102208033,LOC101482435,LOC102800276 coding downstream 8306 26350599 ~ 26379944 (+)
celf5a celf5,LOC102777648 coding downstream 180051 26522344 ~ 26724401 (+)
polrmt polrmt,LOC101481838 coding downstream 536015 26878308 ~ 26935883 (+)
atp5f1d atp5d coding downstream 747930 27090223 ~ 27100256 (+)
G98384 NA non-coding upstream 145454 26191868 ~ 26194089 (+)
G98363 NA non-coding upstream 202913 26135237 ~ 26136630 (+)
G98312 NA non-coding upstream 414493 25884516 ~ 25925050 (+)
LOC120565749 NA non-coding upstream 501796 25786325 ~ 25837747 (+)
G98280 NA non-coding upstream 598994 25739131 ~ 25740549 (+)
G98494 NA non-coding downstream 155739 26498032 ~ 26498261 (+)
G98500 NA non-coding downstream 168891 26511184 ~ 26511527 (+)
G98546 NA non-coding downstream 529051 26871344 ~ 26871564 (+)
G98552 hcn2 non-coding downstream 598619 26940912 ~ 26949064 (+)
G98544 bsg non-coding downstream 650605 26992898 ~ 26998445 (+)
zbtb7a zbtb7a other upstream 44161 26283052 ~ 26295382 (+)
oaz1a oaz1,LOC104950707 other upstream 299677 26034751 ~ 26039866 (+)
dot1l dot1l,LOC102793654 other upstream 320172 25991506 ~ 26019371 (+)
slc35a3a slc35a3,LOC101471768,LOC102790943,LOC100705874,LOC108230529,LOC103354215,LOC106515047 other upstream 600754 25730225 ~ 25738789 (+)
G98194 NA other upstream 792454 25532825 ~ 25547089 (+)
micos13 LOC104918748,LOC103371279,LOC104964520,LOC106536194 other downstream 449436 26791729 ~ 26796287 (+)
si:ch211-212d10.2 LOC103371119,LOC104950605,LOC100693321,LOC101487565,LOC102778050 other downstream 1030516 27372809 ~ 27377054 (+)
ncanb ncan,LOC104966594,LOC107554802 other downstream 1317403 27659696 ~ 27832855 (+)
pip5k1ca pip5k1c,LOC106917759,LOC106949671,LOC107393349,LOC103370870 other downstream 1685671 28027964 ~ 28084387 (+)
LOC120564865 NA other downstream 1794976 28137269 ~ 28146325 (+)

Expression


Co-expression Network