G98544 (bsg)


Basic Information

Item Value
gene id G98544
gene name bsg
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 26992898 ~ 26998445 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU132991
AGACATGTAAAATCAAATACCTTTATTCAGTTTGTGAAAGTTGGAAAACTGGTGGCGTTCCATGTACTTTGATGGTACAACAATTTACACAACTCTGGCTAAGTCTTTTATCTGTGTAACTGAAACGGTAACATCGAATCACAACACTAATCAGGTTAAATGGAACATATGGCTTCTGAATATCTACACACGGGAACAGAGACGACGGTCCAACAATTGCACACAAATCTCTCAGATCACTTTGAGTGAGAAAGAAAAACCATCTAATTAAAAACAGTTCATCACCTGTACTAAATTAAAAACAGCAGTACGTGGTGTTGAGGTCGCAATCAACAGAAGCAACAGATGTTACATCTCATGCACTTGGTCctttacaatatatttttttactctgGATGTGACATTGGCAGCAAAAACATTGGTTAACTAAAACCTCAGTTTCAAATATGTGAACtgcaaaaaggaaataaaagcttgatttaaaaaaaaaaaaaaaaaaaagtaaattttAAAGTGTAGTGGTGCTTGTAAGTATAAAACTCTGCTATGGGAGGATGGCGGTGGTGTGGGGACAGGTCAAACACACTCCAGTAGTTTCATACTAACTGCCATTCTCTTAGCATCAGGATCAAAAAAGGTTTCAGATGCTCTGAACAGAACTCATGCTGTCAAGTCACCATCCCAGATCGGAGAATATAAAAGCAAAGACTGACAACTGTGTGGTCAGTGTATCTGGAAGCATCAAcatgtaaagaaaaaacaaccacaaacgTGCCATTCTTCACATGAGCTGTCTAAtgattttacattgaaaacacacacactttgctaTTAAATGCATGCAATATTTGCCCTGCGGCCTCGAGCAGAAAATTACTTCACACTATGTTCTGTGGCTGCACAACGTGGAGAAGcatatagaagaaaaaaaaaaaaaaaaaaaaaaaaaaaaagaggaaatcaTTCAGTTTCTTAAAACATTTATCACCCAAGCACAAAAAGTAACTTAAAATTGCAGGGTGCACAGTATAATGTGCAACGGCTGAATCCTGGACTGCCATCTGGAGGTCCATctagaacagaaaaaaaattgcATGAATGAAGAATTTAAGTTGTTTTCAAACATTTCATCATTca
>TU132993
TGTTGGAGGCAGCATGGCGAACGTACCGTCGGTGATCTCATCGGGCTTTCTCCTCTTCTCATAGATGAAGATGATGGTCACCAGGATGATGACCTCGGCCACGATGCCAAGGAAGGGCCAGAGGGCAGCCAAGCGACTGCGGACACGCAGGTGGATCTGGTCACTGGTTGTGCCGATTTCATTGGTTCCAGAGCAGACGTAGTCGCCGATGTCTTCTTCGATGCTCAGGTTCTCAATGACCAGAGTGGTCTTGTTAGGGGTGCTCTTTATCTCATATTTGTCGGTAGTGCCGTTGATGATAGGGGTTTGGCCGCCATCTTTGAACCAGGTCCAGTCAGTAGGCAATGGGTAGCCACTGCTCAAACACACCAGCACGCCTTTGTCCTTCTCGTTGCCATGCTCAGAGTGCTTGTAGGCAACAACATGGGGAAGTACTACAGCAAAAAGAGAAATACATATTCAAATTAGAATATGAAAgtttgtatatttaaataaattaccTCCCATGAAATAGTTTATCCTCAAG

Function

symbol description
bsg Predicted to enable cell-cell adhesion mediator activity. Predicted to be involved in axon guidance; dendrite self-avoidance; and homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to act upstream of or within cell adhesion. Predicted to be located in basolateral plasma membrane; endoplasmic reticulum membrane; and lateral plasma membrane. Predicted to be integral component of membrane. Predicted to be active in axon and plasma membrane. Is expressed in intestine and liver. Orthologous to human BSG (basigin (Ok blood group)).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU132991 True 1137 lncRNA 0.36 2 26992898 26994055
TU132993 False 526 lncRNA 0.48 2 26997687 26998445

Neighbor

gene id symbol gene type direction distance location
polrmt polrmt,LOC101481838 coding upstream 57015 26878308 ~ 26935883 (+)
celf5a celf5,LOC102777648 coding upstream 268497 26522344 ~ 26724401 (+)
si:dkey-110c1.10 LOC100701936,LOC102208033,LOC101482435,LOC102800276 coding upstream 612954 26350599 ~ 26379944 (+)
mbd3b LOC103354193,LOC101480296,LOC101063908,LOC104920733,LOC108230843,LOC105938962,LOC103399996 coding upstream 642471 26342442 ~ 26350427 (+)
tcf3b tcf3 coding upstream 653688 26306622 ~ 26339210 (+)
atp5f1d atp5d coding downstream 91778 27090223 ~ 27100256 (+)
midn midn,LOC101067279 coding downstream 122253 27120698 ~ 27147156 (+)
LOC120565509 slc25a42,LOC103371066,LOC103150429,LOC103463696 coding downstream 514710 27513155 ~ 27520341 (+)
tmem161a tmem161a coding downstream 579529 27577974 ~ 27584940 (+)
tmem221 tmem221 coding downstream 607515 27605960 ~ 27611082 (+)
G98552 hcn2 non-coding upstream 43834 26940912 ~ 26949064 (+)
G98546 NA non-coding upstream 121334 26871344 ~ 26871564 (+)
G98500 NA non-coding upstream 481371 26511184 ~ 26511527 (+)
G98494 NA non-coding upstream 494637 26498032 ~ 26498261 (+)
G98384 NA non-coding upstream 798809 26191868 ~ 26194089 (+)
G98545 NA non-coding downstream 14861 27013306 ~ 27016187 (+)
G98626 NA non-coding downstream 271393 27269838 ~ 27271406 (+)
LOC120566143 NA non-coding downstream 310495 27308940 ~ 27309804 (+)
G98635 NA non-coding downstream 313324 27311769 ~ 27312218 (+)
G98649 NA non-coding downstream 360159 27358604 ~ 27358841 (+)
micos13 LOC104918748,LOC103371279,LOC104964520,LOC106536194 other upstream 196611 26791729 ~ 26796287 (+)
LOC120565098 NA other upstream 650605 26339543 ~ 26342293 (+)
zbtb7a zbtb7a other upstream 697516 26283052 ~ 26295382 (+)
oaz1a oaz1,LOC104950707 other upstream 953032 26034751 ~ 26039866 (+)
dot1l dot1l,LOC102793654 other upstream 973527 25991506 ~ 26019371 (+)
si:ch211-212d10.2 LOC103371119,LOC104950605,LOC100693321,LOC101487565,LOC102778050 other downstream 374364 27372809 ~ 27377054 (+)
ncanb ncan,LOC104966594,LOC107554802 other downstream 661251 27659696 ~ 27832855 (+)
pip5k1ca pip5k1c,LOC106917759,LOC106949671,LOC107393349,LOC103370870 other downstream 1029519 28027964 ~ 28084387 (+)
LOC120564865 NA other downstream 1138824 28137269 ~ 28146325 (+)
LOC120565530 LOC100702602,LOC101154857,LOC107096371,LOC105928898,LOC101076602,LOC108230771 other downstream 1773917 28772362 ~ 28774553 (+)

Expression


Co-expression Network