G98552 (hcn2)


Basic Information

Item Value
gene id G98552
gene name hcn2
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 26940912 ~ 26949064 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU133007
aacaatctATAACAAAGATTCAGAGGCCATAATATCATGACTAACAGAAAGCAGAGACATTCATCATCACGTGCCTTTATTGCATCAAGATGCTTGTTTCTATTAAGAATATGCAAAATTATCATAACCTGTTTGTGCTTTTCCAATATGCTAACCCAAGATTATTTGTCTAAACATGAAGCAGTGGAATCAATCTGTATTCAAATACaatttatttccctttttacATTTACTGCAGTGGGATGTAATTGACAGTGATGTTTGTATTGAGGAGCTTGCATTTTCATTACAGCCACACACAAAGAATATAGTACATGTATGTGGAGACTACAGTATCTGCTAGGCACTAGGTATGCACAGTACATGTTATGGGACGTGACAACTGTAGAGTGGCTCAGTAAATAAGAAAATCAGGTCTCTGATTTCCCAGACAGCGACTGCCTTGGGTGGCCTGTTTGATTCAAGGGAATTCATGGTTACTGGTGAAGATCTCAGTGTACATTAGTCTGTAGTGTTTAGGATTGGTTTTGGTATTGGTGTTGGTGTTGGTTTGGTCCTAAGTCACTATTATTGAGTGTCACTAACAGGTCTAGGACATGAGAAAGAAAGCAAGAAAGAGTTAAGCCAACAAAAGTCAGGGATGTAAAGGAAATAACAAATTAATACAGAAGGCTTTGATATTGAATCGTAATTGTATCTTggtaaatacagaaacaacCAGTATTAAAATAAAGTGTTCCATATTTTTCAGTGTTGCTGTAGTCGTTATCGTCCAATAAGAGAGAACTAATCTGAACTCATTAGTGGGTTAGGTGACAAAGTTAGAGACACAAAATCACATCATCGCTTAATCCAAATAAACAGCCCTTGTAGGTAAACATTTTAACCACTCGGAATCTCCACGCTTTACTGTCATTGATAAAGCCAAAAGACACATTGGAATGGTAAATAGTTTTAACTGTTAATAAGCTGTAGCATTGTGAACAGGGAAAATTAGGAACTATGAAGaaagtatttataaaaaaacaaaacattttgataGCGCAAAACTTGGCAAACACAAAAGCTTCTGTAGATGTtgccacgtgtgtgtgtgtgtgtatgtgtgcatgtgtgcatgtgtgtgcgtgtgtgtgtggtacagaCATCATCCTGAAAAAGTTgaacagctgtgttgttgtaACATTTACTAACACTTAATATGTTTGTAAAGTTGCAAAAAGAGGGAAAAGTGCATTTACAGAGTTCTGGGCAACATGCTAATTAGATGTCAGAGGTAATAGTAATGACATAGAAggtaaaaaacaaatcaaaaagcaGCATTGGTCAAAGGACCAGGATTTGCAAATGGAGTGTGGAGAATGGAAATGTggaaaaatgaataaacaaatgaaacatACACAATAGAAGAAACCATGCAGGCCTCACACCAGCTGGCACAGGATTATATACAAACTGTGGGTAGCACTGTGAGCGACTGTAGAAGAAAAAATTATACGTCTTCTGTAATGCAAACAGATTTGTTCTAACTATATGGGTTCATACCAGATGATAATATGCATTTTGTCAAAGATTAAAAagatatttcattttcaaacatgtttctttatgtctacagttacagtgaactaggctaaataaataaatagtctgGTTTACATAATGATGTGTACACATAGAAATAACAACCACGTCAATCACGTTATTGTCACTAAAGAGCGCAGATTGAAAACTAAATATCAGTTCAAGTTCTCCCAAACACAGACTTTAAGCCAATTCTCAGTCAAGTTTGGGAAATGAATCCAAAAGGTGAAATATTGCATCTCCATCAACACCTTAATGACACAACAGAACCTCATCTGCATAGAGTGGCCACTTACTCTTTTTTAAACCGTTATTGCTGTTAATATGACTGAATGGGTTAAGTGTAGTATTCTCTGATTAGCACGTTTAGTTAGTGTGAATGATTCAGTCTTTGACACGTCGTTCAAAGCTTAACATTTTGAAACAGCatacaaaaaagtaaatttggTTTCACTCCGATCATTCTTCAGCTTTTATTTAAATTGCGTTTGGGATCATTAGAGTTACTAATATCTGCCGCCTgcattcctctactgtgtgcaTTCTAATGAAGTATAAAACAGTCCATCAACATATTTAGTCACTAAATGCATTCCCTGTCCTAAGACAGTGCCTCCAGGACATAATGTGAAGTTCAGTTAAACACTATTCTCATAACGAGCCTCTGTATTCATAATTTTTTCGAGCATCCAAATAGGTTCCACAGGGCATAATTTGGGCATAAAACAAGAACACAACAGACCTCAAAAACACTGTTTAAAAATACTTACAAACcatcaacttttttttcccactgaTGACTCTGAAGGTGGATAACAACGCAGGAACTGaaactaaacaaaatgaaaatgcaaaacaatcaTAGAAGAAGAACTTATTATTGGCTCTGAATAATAAAATCCAATCAGAGGAGAATAATAACAGTCCCAAACAGACCCGAGGGATTCCAATTTCCACTCTCATTACCCAGTAATGGTTCAGGCATTAGTCAGATGAggtgaaaaaaaagtaaggtcCAGGAGAAAAGGTTCCCTTTCTAATGCTTTTGGTCACAAATCAGTAGCAGTCCTTATTGAGGCATTAATGAGAGAGCCACACTGCAAAATACATCCTGCAAAGTATCTGCACTGTCCTTGGATGTCGATCAAAGCTGTAGCGTTTACAGTAAGGTTGAGTTTTGCAGGAGTTTCATGAAATGACTTTGGCATAGTGACATTGCCCAAACTGCTACAAAAATGTGGAATTCATGGTTAGAAAAGAATGAATTCATATTTTGATTATGTGAGTTTTAATGGATGTACATTTTGAGTCATATAAAATGCTGTGTAATTAACTGGCAGTGAATTATCATTTCTAAGCTACAATAGTGTGGGATGTTACTACTCACATAAACCCATTACTTCAGATATCAAATCTGGTGTTAGGAAGAAGAGTCTTTTAGTCAGGTGCATTTTGATTGGATCTTGTTAATTTATGAATCTTAAAGCTACATTAATACacttttggccacttgggggaaCATAAACGGCAAAACAAGCTGACAGCCCTGACATATTATTACTTTATCAAGTTGTTATGGCAGACATGTTAGCAAACAATCTGATACTTACATATCCAGCACACACAAGCAACATTATAATAGTCCCACTGGAGTCATATTTCTGGCCACCTATCTCTATATATTTACTTGCCTTTTAGATCTGGttcaccaactcctgagaaagATATCTGGTTCTTTAGTTTTGCTAAATGTGCAAATGGGTTTAAGGGAGCGTTTCTGCTGAAAACTGCTGCATTTTGCTACTGGAAACAGGGTTGAGTGATGAGACTAAACTGTACAGAAAATCTGTTGGCTTTAaagccaaaacaatgagctaaagaAAAGCCAACAAAAACTCTATAGAGGCTGGAACTAGACAATTTGTCCCACTGTAATTTCTATATAAAGGATATTAATTGTCTGTGATCTGAACATCCTAGGGGGTCACATATTTATCGGTGGGGTCTATCATAGGCAGGGAAGACTTACAAAAGGGGCCAACTAGATTCAGAAAATGCTTTATTTTGACTTGTATATTCATTCATCCTGTCATATCAATATTCTGGGGAAAGATATGCTAAAAATCATTATTACATATTATCTATATAGGTCTAGGAATACTTAGGAATCACAAAAAAACCACaattttaatgttcaaactttTTAGGAAAACCACAATTATGCCTTTGTGAGAAGATCATTTTCTAAAGCCAGCCTACTGACAAAATGTGGTAGATACAGTATAAACCCATTAAAGTGCCAACTTCTGATATCTGAAGCAGGTCCCTGATTTTCCTTTAGTCCCATCGGATCCAAAGTTTGCATTAAATGAGGTGAATGAGAGGATAGTGAAGCAGATATGCCCATGACTATGttgtaaaataaagtaaataaaggaGTTGGAGATGGGTAGATGCTACTTTACCACTACTGTGCAACTACTATGTCTGCGAGTAGAAACTTCTCAATGCTGCAGATTCAAAAACCACAATACAGAATTTATGTTCGAACAGTCTTCTCTCAGATTCTCCCTGCTGCCAATCAACACTCATACATTCGGATAGTCAAACTaaaatagagagagaagaggaccTGTCGAAGATAAGCAGAAAGCCCCAGTGTTCCTGCAGTCAAGTCTCTCATTGAGTCACTCCCCCAGAGTAGTTAAATTAAGATCACAAGTTTGAGGATAGCCTGGATCTGACTCTGATGTGGTCTGTTTCAGGAAGGCTCACTATAGAGTCCTTCTTGGGTCGTCCTGAGTCCCCCAGACCTGTTCCTGCACCCCCTACTGCCATCCCTGCACCAGCCCCAAAACTCTGCACAGAACCAGGCAGGGATGCTACAGGGAAGGCCCCCACAGACATCTGGTGGGGCAGTACCACCTTAGGTGGTATAGCGCTCCGGATGCCTGTGTGACCTGATGGGGTCTGAGGGGGTCCAATGGAAGTAGAGGAGACTCTTGTAGACTGGGGGGGACTAGGGGCACCTGTTTGCCCCCCCTCATGAGGCAGTGAGGGCTGAGAGGCTGACAGTGCCCTGGCGTCTTGGCTCAAACTACCCAATTGCAAGGAATGAGTACTCTTATATGTGCCGGGCCGGTGTGCGGGGCTGGCTATGTGCTGCTGGGCTAGAGAAAGCTGGGAGCCTGAGGTGGGACCAGCTAGGGCACTGGATCCATACTGGAATGATCGTCCTCCAAGTGTCAGCGGGCTCTGGACAGGGGGGCTGGACTGGATGGGAGCAAAGGCACCAGAAGCAATGAACTGAGACTGCAGTGGAGAAGCTGAAACAGGGCTGGGCACACTTTCCATCACCTGGAATCTCCTCACCATCTTGGGGGACTGCAGGTTCCCTACTCCCATCAAGTTCCCTTGCATGGGGGCACAAAAGTTCATGGCTACTGCCTGCTGCAGAGTGGCAATTGCGGAATTCTGGGGATGGGTGGAGGAACCTGGAGGATTAAAGACTCCGTCACTGTATAGAGGAGGTGTCATGGACATGGCCCGCGAACGTGGTACATTGACCTGTTGAACCATTTCCCGATCATATTTAACTATCTCCTGGATCATCTCGTTCTCCCGGTTGTTGAAAACACCCGAGTTCAGATCATGCTGAACTTTGTGCATCAGGACTGAGTTCTTCTTGC

Function

symbol description
hcn2 Enables cation channel activity and identical protein binding activity. Involved in inorganic cation import across plasma membrane; regulation of membrane potential; and response to purine-containing compound. Located in plasma membrane. Is integral component of plasma membrane. Part of HCN channel complex.

NR:

description
PREDICTED: potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 2 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133007 True 5273 lncRNA 0.40 2 26940912 26949064

Neighbor

gene id symbol gene type direction distance location
polrmt polrmt,LOC101481838 coding upstream 5029 26878308 ~ 26935883 (+)
celf5a celf5,LOC102777648 coding upstream 216511 26522344 ~ 26724401 (+)
si:dkey-110c1.10 LOC100701936,LOC102208033,LOC101482435,LOC102800276 coding upstream 560968 26350599 ~ 26379944 (+)
mbd3b LOC103354193,LOC101480296,LOC101063908,LOC104920733,LOC108230843,LOC105938962,LOC103399996 coding upstream 590485 26342442 ~ 26350427 (+)
tcf3b tcf3 coding upstream 601702 26306622 ~ 26339210 (+)
atp5f1d atp5d coding downstream 141159 27090223 ~ 27100256 (+)
midn midn,LOC101067279 coding downstream 171634 27120698 ~ 27147156 (+)
LOC120565509 slc25a42,LOC103371066,LOC103150429,LOC103463696 coding downstream 564091 27513155 ~ 27520341 (+)
tmem161a tmem161a coding downstream 628910 27577974 ~ 27584940 (+)
tmem221 tmem221 coding downstream 656896 27605960 ~ 27611082 (+)
G98546 NA non-coding upstream 69348 26871344 ~ 26871564 (+)
G98500 NA non-coding upstream 429385 26511184 ~ 26511527 (+)
G98494 NA non-coding upstream 442651 26498032 ~ 26498261 (+)
G98384 NA non-coding upstream 746823 26191868 ~ 26194089 (+)
G98363 NA non-coding upstream 804282 26135237 ~ 26136630 (+)
G98544 bsg non-coding downstream 43834 26992898 ~ 26998445 (+)
G98545 NA non-coding downstream 64242 27013306 ~ 27016187 (+)
G98626 NA non-coding downstream 320774 27269838 ~ 27271406 (+)
LOC120566143 NA non-coding downstream 359876 27308940 ~ 27309804 (+)
G98635 NA non-coding downstream 362705 27311769 ~ 27312218 (+)
micos13 LOC104918748,LOC103371279,LOC104964520,LOC106536194 other upstream 144625 26791729 ~ 26796287 (+)
LOC120565098 NA other upstream 598619 26339543 ~ 26342293 (+)
zbtb7a zbtb7a other upstream 645530 26283052 ~ 26295382 (+)
oaz1a oaz1,LOC104950707 other upstream 901046 26034751 ~ 26039866 (+)
dot1l dot1l,LOC102793654 other upstream 921541 25991506 ~ 26019371 (+)
si:ch211-212d10.2 LOC103371119,LOC104950605,LOC100693321,LOC101487565,LOC102778050 other downstream 423745 27372809 ~ 27377054 (+)
ncanb ncan,LOC104966594,LOC107554802 other downstream 710632 27659696 ~ 27832855 (+)
pip5k1ca pip5k1c,LOC106917759,LOC106949671,LOC107393349,LOC103370870 other downstream 1078900 28027964 ~ 28084387 (+)
LOC120564865 NA other downstream 1188205 28137269 ~ 28146325 (+)
LOC120565530 LOC100702602,LOC101154857,LOC107096371,LOC105928898,LOC101076602,LOC108230771 other downstream 1823298 28772362 ~ 28774553 (+)

Expression


Co-expression Network