G98663 (yjefn3,LOC104950619)


Basic Information

Item Value
gene id G98663
gene name yjefn3,LOC104950619
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 27401644 ~ 27404837 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU133149
TCTGggccttttttttaacagctaATGAAGTAACTGAAACAAAAGTAATGCCGAAGTGCAGGCTGACAAAACAAACCTAAAACACATAAATGGAAAATTGGAAATGGCCAACCTACACAACATCTCATCTCAGCAGCACACTTCAGTAGAAAGTTAAACATAAGACCATTAGAACATGAACattttgtgaagaaaaaaaactttccagTGGTTGGCATCATAGAAATATCACCTCTCTTTTCTGACTGTGGAAAAAGATATTTCTGTCTTTTGCAAAGTAATCAGAAAACAGTGTAATGCTACAGCTTTTACAAGTAGACTGACACAAAAACTCCTCATGCCATTCCCTAAAAAGACTCAAACCACAGCTTCTAAATATTATCCTTTTACTTTAGCTCAACAGCATATTTGGCTAAGGTGTAGCCTGATCTACACAACTGAGCTGTTAACATTAAATctataaaatacaaaacaaagagaATAGATCAACTGTacgttttttgaaaatgagcaGCGGCCACACTGGCTCTTATGTTTCCCATGTGTTACAATTCTATAAGACAGTCTGTGCCAGGGTAGTCTGGGAGGTTAAGCTCGTATTTTTTCTGGATGTCATAGGGCAGGAAGCGTCCGGCCAAAAAATGCTTCCCAGAGAAACTCATGGCGCACTTCTTTGGTGCTGTGAGTGAGATGAGAACTTCTGGGTTAATGCCATCCTGACTTGGTTCTTCTACGTCCCATCCTGAGGGCACATCCACACTGGCAATGGGGATCTTGACTTGTTTCAGGGTGACCAGAATGCCAGGGTAGGGCTCCTTAATGTTGGCACAGTCTGCATCTGGGCCCAACATGGCATCAATCACTAGGTTGTAGGCATCGTTTATGAGCTGTACCTCTGTGGGAAGATAGGAGAGGAAAGGGATGTCCATCTTCTCACACTGAACTGTAAAGTCCTGGTGTAGACTTTGAGAGGAGCGTTTAGGGTGGTAGATGGTAGGCTCATATTCCTGTGTGAGACGAGGCAACAGAGACAAACAACAaaggtggggtgtgtgtgtgtgcgcgtcggGGGGGGCACAAAGGAGGAGATAAATAAGAATAGAGAAAAGGTTACGTAATATCAACAATTCTATTTCAGCCAAGACTGACATGATTGAATGTGTATGATAGATTTGGCCTTCAGTTCATGACAAGTAAATATACTGTGGACCAGTGATCAGAAGTTTTGGTGGTTTGCTGCTTCCTGAATGAATACTTCACTTATAAACTGGAAGCTGAGAGGAGTAGAAATCCAGACACCCGCAGTCTGAAAAGTCTGTGATGCTCAGCAGGAAGCACCTGTGACCTTTACACGGTCCTAATATAAATCTTAAAACCTAGGAACCACtgtcagaagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctgtgtgtgcgtgcgtgcgtgcgtgcgtgtgtgtgtgtggtcattgATAAATATTCTAATAATGACTTTTAAAGGGCAGGTTTACCCATTTTTCTCTCACTTAAACCTAATGGTATCAAGCCATGAAAAtaggttttgttttattttgcccAGGGCTGAGATATCCATCCACTTATCCATGCTAAAGCACCAATGGAGTGCTCATAGCTTTTAAACATTactttaaaaagagaaaagtaaGATCTATTTAGAACAATGTGCCATTACTCTGGATAATCCACAGCACACACTGTCAGCAGGATTCATAAGAAATATTTCTTCGGTAGAAAGCAATTCCAATGAAAACTGTTGATAGCGAGGCCTACGCAGAGTAACTGGGTCACTGTTTCTGGAAAGACACATTGCAATCGAACTGCTGTCATAGTTGTGAGCCTTGCCACCACTATGGCTCTATGCTTGGCAATGTTGGTCAGTTGGTTGGATTGTTGGTCCATTACTTTGCTCCCGACTGAAATATCTTAATAttactattggatggattgccctGCAATTTTGTACAgccattcatggtccccagaggatgcaTCCCAATGAATTTGGTGATCCTCAGTCTTTTTCTCTAGTGCCACAAAGAGGTTGAGATTTGTGTCTTTTAGTGAAAAACAGTCTGCCTTCAAAGGAAGTGATCTGTCGGTGAGATAGACTGCTGCTTCCTTGGGGATCCTAAACCACTCAAACAGCCACAGCCACTCATCACTTGACGTCATCTCCATTGTGATCTCCGCAGAGCGAGCAACCAGACCAAATGCAATccactgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtttcccttgGGGTAAGCCAGCCGCCCCCGGTATGCCCTTGACCTCATCAGCAGTTACACCATCTAACTGT

Function

symbol description
yjefn3 Predicted to enable NADHX epimerase activity. Involved in hematopoietic stem cell proliferation and regulation of Notch signaling pathway. Acts upstream of or within several processes, including membrane raft distribution; negative regulation of angiogenesis; and regulation of cholesterol efflux. Predicted to be active in mitochondrion. Is expressed in somite. Orthologous to human YJEFN3 (YjeF N-terminal domain containing 3).

NR:

description
PREDICTED: yjeF N-terminal domain-containing protein 3-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133149 True 2423 lncRNA 0.43 3 27401644 27404837

Neighbor

gene id symbol gene type direction distance location
midn midn,LOC101067279 coding upstream 254488 27120698 ~ 27147156 (+)
atp5f1d atp5d coding upstream 301388 27090223 ~ 27100256 (+)
polrmt polrmt,LOC101481838 coding upstream 465761 26878308 ~ 26935883 (+)
celf5a celf5,LOC102777648 coding upstream 677243 26522344 ~ 26724401 (+)
si:dkey-110c1.10 LOC100701936,LOC102208033,LOC101482435,LOC102800276 coding upstream 1021700 26350599 ~ 26379944 (+)
LOC120565509 slc25a42,LOC103371066,LOC103150429,LOC103463696 coding downstream 108318 27513155 ~ 27520341 (+)
tmem161a tmem161a coding downstream 173137 27577974 ~ 27584940 (+)
tmem221 tmem221 coding downstream 201123 27605960 ~ 27611082 (+)
rfxank rfxank coding downstream 208015 27612852 ~ 27615467 (+)
si:ch73-63e15.2 sbno2 coding downstream 489879 27894716 ~ 27971455 (+)
G98654 NA non-coding upstream 6361 27394321 ~ 27395283 (+)
G98653 NA non-coding upstream 8678 27392273 ~ 27392966 (+)
G98652 NA non-coding upstream 21507 27379665 ~ 27380137 (+)
G98649 NA non-coding upstream 42803 27358604 ~ 27358841 (+)
G98635 NA non-coding upstream 89426 27311769 ~ 27312218 (+)
G98685 NA non-coding downstream 93386 27498223 ~ 27498887 (+)
G98723 NA non-coding downstream 181588 27586425 ~ 27587108 (+)
G98763 NA non-coding downstream 443896 27848733 ~ 27848938 (+)
G98766 hapln4 non-coding downstream 450839 27855676 ~ 27859123 (+)
G98770 LOC104966597,LOC101073477 non-coding downstream 474480 27879317 ~ 27882311 (+)
si:ch211-212d10.2 LOC103371119,LOC104950605,LOC100693321,LOC101487565,LOC102778050 other upstream 24590 27372809 ~ 27377054 (+)
micos13 LOC104918748,LOC103371279,LOC104964520,LOC106536194 other upstream 605357 26791729 ~ 26796287 (+)
LOC120565098 NA other upstream 1059351 26339543 ~ 26342293 (+)
zbtb7a zbtb7a other upstream 1106262 26283052 ~ 26295382 (+)
oaz1a oaz1,LOC104950707 other upstream 1361778 26034751 ~ 26039866 (+)
ncanb ncan,LOC104966594,LOC107554802 other downstream 254859 27659696 ~ 27832855 (+)
pip5k1ca pip5k1c,LOC106917759,LOC106949671,LOC107393349,LOC103370870 other downstream 623127 28027964 ~ 28084387 (+)
LOC120564865 NA other downstream 732432 28137269 ~ 28146325 (+)
LOC120565530 LOC100702602,LOC101154857,LOC107096371,LOC105928898,LOC101076602,LOC108230771 other downstream 1367525 28772362 ~ 28774553 (+)
ralgps2 ralgps2 other downstream 1370538 28775375 ~ 28865487 (+)

Expression


Co-expression Network