G98766 (hapln4)


Basic Information

Item Value
gene id G98766
gene name hapln4
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 27855676 ~ 27859123 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU133272
caagacttttattttttcatatccATTCTGTATAGTGGCAAACATACTCTGTAATAAAGGTTGCTGCTTGTAACATTTATAGTGCAACTGGTGGCCCAGGTAGCTTACGGGAAATAGCAATTATCGTAGCTTTGTATTTCTGCTTGTTCAGCCTCAGCAACTACTCTTAGCCAATCAATACATGCTTGCTTCAGTCTAAGCTAAGATGCTATCACAAAATAAAGCTCTATGTATTTAAAGTGGAAATCTTTTTAGAGCTAGTGCAATATTCACTACTTGTGCAGCTCTGATGATGATATTGCCAAGTCTTAGTTAATGAGAAAAATGACTCACATTGTGCCAGAGTGTTGCTAACCAAACATGGCACCCGGATACAGGCAATTAAACGAAAAGTACAGTCGGGCAGATCATCCCGTCTCACACAGTAATGGATCTTTTCACCCTGGCACTGGGATTCTGGCTCAGAATGGAGCTCAGAGCTCAGGGGCCACAGCAGGGGGCAGAGATAtgacacccacccacacacgtAAACAAGGATATTCATTGCATCTGATCTGATGTGTGCCTGAGTAATGATCAAGCTGTTGTTTAACCTCACAGTTTTCCAGCGACAGAAGTGCTAACATACTCCTTAAGATGATTGACTGACTGGAGATGGAAGGAACATCAGCCTAATAAAGATGTCACCCTTAATTTTATACAGCCTCGCTTCTTCTCTCTGGCAAATCTGCAAATGAGTACATCTTGTCTGTAAGTGTTTTACTTTAAAAGCGATGAATGGAGTCGGCTGCTAGGCGACAGTTGTTACTGTCAAATTTAAATTGCATCCCCCCCTCTTGCTCTCAATCTCTACACTTTAAATCACACTGGTAGCATTCACGGGGATGCTGCGGCTGCTCTTTCTCCTTGTCATACTATTTGTGGGGCTTTTTGTCGTTTCAGTACCACCTGCTGTTTCATCCTCGTTTCTGCGGAAACAGTAGACCCCATAGAGGCGGAATTTTTTATCAGGGAATCCCAGGTGTCGGACGCCTGGCTGGGATCCTCCACAGCGAGAACGGGGGTTGACTATGGGGTAACGGATGCTGCCATCCTCCAGCCAGCCGGCTTCACAGCGGTCCAGGAGCTGGAACTTCCATGCAGCGTACAGCTGACCCACTTTGGCCACAGCTGAGCCATCTCGAATGCAAGCCTTCACCGCCTCCGCATAGTTCACCTTCTTGAAGCGTTTGAGGAAGTACACTTTGCCTATGGGGATCATTGAGCTTGGAAGTAAAACAGAAAGCATCGTAGCGCTCATCCTCTTTGTGCCTGTAGCCATAGTTACGGACGCCAGCGGGGGTGTCCTTGCGGCCGCACTGGTCTCTGGGATGAGAGATAGGGTACTGGACTGAGCCATCCTCCAGCCATCCAGCATTACACCAGTCTAGTCCTTCCAGCCAGG

Function

symbol description
hapln4 Predicted to enable hyaluronic acid binding activity. Predicted to be involved in central nervous system development and skeletal system development. Predicted to act upstream of or within cell adhesion. Predicted to be located in extracellular region. Predicted to be active in extracellular matrix. Orthologous to human HAPLN4 (hyaluronan and proteoglycan link protein 4).

NR:

description
PREDICTED: hyaluronan and proteoglycan link protein 4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133272 True 1444 lncRNA 0.47 2 27855676 27859123

Neighbor

gene id symbol gene type direction distance location
rfxank rfxank coding upstream 240209 27612852 ~ 27615467 (+)
tmem221 tmem221 coding upstream 244594 27605960 ~ 27611082 (+)
tmem161a tmem161a coding upstream 270736 27577974 ~ 27584940 (+)
LOC120565509 slc25a42,LOC103371066,LOC103150429,LOC103463696 coding upstream 335335 27513155 ~ 27520341 (+)
midn midn,LOC101067279 coding upstream 708520 27120698 ~ 27147156 (+)
si:ch73-63e15.2 sbno2 coding downstream 35593 27894716 ~ 27971455 (+)
tjp3 tjp3 coding downstream 113670 27972793 ~ 27997414 (+)
arhgap45b arhgap45 coding downstream 140968 28000091 ~ 28017688 (+)
gpx4a gpx4 coding downstream 162822 28021945 ~ 28027238 (+)
LOC120564862 LOC104939946,LOC103370860,LOC101073928,LOC105932471,LOC103155165 coding downstream 226767 28085890 ~ 28090584 (+)
G98763 NA non-coding upstream 6738 27848733 ~ 27848938 (+)
G98723 NA non-coding upstream 268568 27586425 ~ 27587108 (+)
G98685 NA non-coding upstream 356789 27498223 ~ 27498887 (+)
G98663 yjefn3,LOC104950619 non-coding upstream 450839 27401644 ~ 27404837 (+)
G98654 NA non-coding upstream 460393 27394321 ~ 27395283 (+)
G98770 LOC104966597,LOC101073477 non-coding downstream 20194 27879317 ~ 27882311 (+)
G98972 NA non-coding downstream 453471 28312594 ~ 28318888 (+)
LOC120565132 NA non-coding downstream 590420 28449543 ~ 28460210 (+)
G99007 hook1,LOC102781169,LOC106584290 non-coding downstream 710525 28569648 ~ 28570858 (+)
G99108 NA non-coding downstream 828759 28687882 ~ 28688118 (+)
ncanb ncan,LOC104966594,LOC107554802 other upstream 22821 27659696 ~ 27832855 (+)
si:ch211-212d10.2 LOC103371119,LOC104950605,LOC100693321,LOC101487565,LOC102778050 other upstream 478622 27372809 ~ 27377054 (+)
micos13 LOC104918748,LOC103371279,LOC104964520,LOC106536194 other upstream 1059389 26791729 ~ 26796287 (+)
LOC120565098 NA other upstream 1513383 26339543 ~ 26342293 (+)
zbtb7a zbtb7a other upstream 1560294 26283052 ~ 26295382 (+)
pip5k1ca pip5k1c,LOC106917759,LOC106949671,LOC107393349,LOC103370870 other downstream 168841 28027964 ~ 28084387 (+)
LOC120564865 NA other downstream 278146 28137269 ~ 28146325 (+)
LOC120565530 LOC100702602,LOC101154857,LOC107096371,LOC105928898,LOC101076602,LOC108230771 other downstream 913239 28772362 ~ 28774553 (+)
ralgps2 ralgps2 other downstream 916252 28775375 ~ 28865487 (+)
G99297 NA other downstream 1804510 29663633 ~ 29665090 (+)

Expression


Co-expression Network