LOC120565132


Basic Information

Item Value
gene id LOC120565132
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 28449543 ~ 28460210 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU133552
CGGACTTCGTGAAGTTTAGTAGGTTGTAGAAGGACATTGTTATCCATTACTGAGGCTGACAACTAGTTATGCTGTGTTTTGGCATATTGAAATCGACAAGAGGAGACGGacatttgtgactgtaaaagagAGAGGATCGGGGAAGCTCCTTCGGACCACACAGAGAGCGATCTTCCATCCTGCTGGTGTGATGTAGACTGTCGCTGCTGGTTTCTGTTCTGCTGATCTTCCTGCTGTGGTTTCTTCGGGTGCTCTGTCTGCTGCCATCGCCAAGTTCGCCTTTATATCCCCTTGACTGGGATTCTGACTCCCCTCATCCGCTCCATCTACAACTTCCTGTAAGGGAGATCACATTCTCCGAAACAGTGCTGATCCAGTTCAACTTTTCCCGAGGAGGCTGCGGggtcatccattgttttgaagGTTGTCACTTGACTGTCAGCTCTCCATCGCAGCCCTGCATGGCAGTCAAGAAAAGAACCTCCTGAACCGTTCCTGCTTAACTCGCCTCCACTGGACCTTGCacatttttttccatctcaACATCAAACATATTGAACGATACTCtaaaatttatatataaattgcCCAGCCATACGTCAGCCCAAACTTACTTTTCCtgacacatttaacattaactTGTACGTAATACATCCTCATACACTGGAGTATCTCATGAGTACAGATGCCCATCAATACGCTGTTGCAGGAGAGGTAAATGACACCAAGATATGGCagttgaagaaaaacaaatgtagagTATGTGATAACGGGACATGCAAGTCATCAATTATCAACAGTGTTATTTTTGTGGTGGTTAAGTCTAGATTGATCATGCTAGTAACGTTAACTAGCAAGATGTTCGTTAAGGGCTGACGGCTGGTTAACATTACGGACAAAAACTATTTGTTCCTCGTATTCTCTTGTGTGTATCACGTAAccgtctcctctagctgttgtGGTTGATATGACGTAGGTCCCCTAGCTTTGACCAGACACAAAAATGGTGACAATGTGATGTCACGTGGTCcttataaatataattataaatataaatatataccagAAACTATGCACAAAGGACTACTTGCACCCTAGTGCTGCTgaattttttatgttatttaataaatgtcatgttttatatctgtcatgcttttgtgtttgtca
>TU133553
GACACCAAGATATGGCagttgaagaaaaaacaaatgtagAGTATGTGATAACGGGTCATCAATTATCAACAGTGTTATTTTTGTGGTGGTTAAGTCTAGATTGATCATGCTAGTAACGTTAACTAGCAAGATGTTCGTTAAGGGCTGACGGCTGGTTAACATTACGGACAAAAACTATTTGTTCCTCGTATTCTCTTGTGTGTATCACGTAAccgtctcctctagctgttgtGGTTGATATGACGTAGGTCCCCTAGCTTTGACCAGACACAAAAATGGTGACAATGTGATGTCACGTGGTCcttataaatataattataaatataaatatataccagAAACTATGCACAAAGGACTACTTGCACCCTAGTGCTGCTgaattttttatgttatttaataaatgtcatgttttatatctgtcatgcttttgtgtttgtca
>XR_005640191.1
CGGACTTCGTGAAGTTTAGTAGGTTGTAGAAGGACATTGTTATCCATTACTGAGGCTGACAACTAGTTATGCTGTGTTTTGGCATATTGAAATCGACAAGAGGAGACGGacatttgtgactgtaaaagagAGAGGATCGGGGAAGCTCCTTCGGACCACACAGAGAGCGATCTTCCATCCTGCTGGTGTGATGTAGACTGTCGCTGCTGGTTTCTGTTCTGCTGATCTTCCTGCTGTGGTTTCTTCGGGTGCTCTGTCTGCTGCCATCGCCAAGTTCGCCTTTATATCCCCTTGACTGGGATTCTGACTCCCCTCATCCGCTCCATCTACAACTTCCTGTAAGGGAGATCACATTCTCCGAAACAGTGCTGATCCAGTTCAACTTTTCCCGAGGAGGCTGCGGggtcatccattgttttgaagGTTGTCACTTGACTGTCAGCTCTCCATCGCAGCCCTGCATGGCAGTCAAGAAAAGAACCTCCTGAACCGTTCCTGCTTAACTCGCCTCCACTGGACCTTGCacatttttttccatctcaACATCAAACATATTGAACGATACTCtaaaatttatatataaattgcCCAGCCATACGTCAGCCCAAACTTACTTTTCCtgacacatttaacattaactTGTACGTAATACATCCTCATACACTGGAGTATCTCATGAGTACAGATGCCCATCAATACGCTGTTGCAGGAGAGGTAAATGACACCAAGATATGGCagttgaagaaaaacaaatgtagagTATGTGATAACGGGACATGCAAGTCATCAATTATCAACAGTGTTATTTTTGTGGTGGTTAAGTCTAGATTGATCATGCTAGTAACGTTAACTAGCAAGATGTTCGTTAAGGGCTGACGGCTGGTTAACATTACGGACAAAAACTATTTGTTCCTCGTATTCTCTTGTGTGTATCACGTAAccgtctcctctagctgttgtGGTTGATATGACGTAGGTCCCCTAGCTTTGACCAGACACAAAAATGGTGACAATGTGATGTCACGTGGTCcttataaatataattataaatataaatatataccagAAACTATGCACAAAGGACTACTTGCACCCTAGTGCTGCTgaattttttatgttatttaataaatgtcatgttttatatctgtcatgcttttgtgtttgtcagtACATTTTTTAGCTTTACATTTTTAGTAATGcatggaataaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133552 False 1167 lncRNA 0.42 3 28456993 28460166
TU133553 False 439 lncRNA 0.36 2 28449543 28460166
XR_005640191.1 True 1211 lncRNA 0.42 3 28456993 28460210

Neighbor

gene id symbol gene type direction distance location
LOC120565126 LOC104959127 coding upstream 70512 28373583 ~ 28379031 (+)
LOC120565127 LOC101485093,LOC102207510 coding upstream 95787 28346415 ~ 28353756 (+)
serbp1a LOC106917776,LOC106949688,LOC103463733,LOC104930792 coding upstream 179904 28261055 ~ 28269639 (+)
hsd17b7 hsd17b7,LOC100698819 coding upstream 191939 28253295 ~ 28257604 (+)
ddr2a ddr2 coding upstream 196413 28218202 ~ 28253130 (+)
LOC120564926 NA coding downstream 61563 28521773 ~ 28523624 (+)
LOC120564927 LOC103354187,LOC101478050 coding downstream 92420 28552630 ~ 28565249 (+)
si:dkey-183n20.15 LOC104925996,LOC104959169,LOC100703951,LOC102207780,LOC101477488 coding downstream 117382 28577592 ~ 28585350 (+)
LOC120565214 LOC103376736 coding downstream 179536 28639746 ~ 28649744 (+)
mmachc mmachc coding downstream 199728 28659938 ~ 28663278 (+)
G98972 NA non-coding upstream 130655 28312594 ~ 28318888 (+)
G98770 LOC104966597,LOC101073477 non-coding upstream 567232 27879317 ~ 27882311 (+)
G98766 hapln4 non-coding upstream 590420 27855676 ~ 27859123 (+)
G98763 NA non-coding upstream 600605 27848733 ~ 27848938 (+)
G98723 NA non-coding upstream 862435 27586425 ~ 27587108 (+)
G99007 hook1,LOC102781169,LOC106584290 non-coding downstream 109438 28569648 ~ 28570858 (+)
G99108 NA non-coding downstream 227672 28687882 ~ 28688118 (+)
G99189 NA non-coding downstream 510277 28970487 ~ 28972086 (+)
LOC120566147 NA non-coding downstream 532018 28992228 ~ 28992610 (+)
G99217 NA non-coding downstream 559325 29019535 ~ 29034406 (+)
LOC120564865 NA other upstream 303218 28137269 ~ 28146325 (+)
pip5k1ca pip5k1c,LOC106917759,LOC106949671,LOC107393349,LOC103370870 other upstream 365156 28027964 ~ 28084387 (+)
ncanb ncan,LOC104966594,LOC107554802 other upstream 616688 27659696 ~ 27832855 (+)
si:ch211-212d10.2 LOC103371119,LOC104950605,LOC100693321,LOC101487565,LOC102778050 other upstream 1072489 27372809 ~ 27377054 (+)
micos13 LOC104918748,LOC103371279,LOC104964520,LOC106536194 other upstream 1653256 26791729 ~ 26796287 (+)
LOC120565530 LOC100702602,LOC101154857,LOC107096371,LOC105928898,LOC101076602,LOC108230771 other downstream 312152 28772362 ~ 28774553 (+)
ralgps2 ralgps2 other downstream 315165 28775375 ~ 28865487 (+)
G99297 NA other downstream 1203423 29663633 ~ 29665090 (+)
si:ch73-389b16.1 ccdc18 other downstream 1967293 30427503 ~ 30429291 (+)
G99545 NA other downstream 2350308 30810518 ~ 30811236 (+)

Expression


Co-expression Network