G99007 (hook1,LOC102781169,LOC106584290)


Basic Information

Item Value
gene id G99007
gene name hook1,LOC102781169,LOC106584290
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 28569648 ~ 28570858 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU133572
CTGTCTCTTGTATGTCTCAAGCTGTGCGCGGGCAGCGTTGGCCTTGCGCAGTTCTTCCTCCAAGCTGACAGTGTTGTGCATGTAAGTCATGTtgttctcctccagcagcttCATTTGCCTCTTCAGATCACCTAGATTCTCCAGTTTACGTTTGTATGTATCCACTGAGGCCTCCAGCATCACCACCCGATCTGAGCAGTTCCTACAAtatatgaatacaaaataaatgcacaaaAATATCAGTTGAAAAAGCTAATCCATGGTCTCCACTTGCACAGATGAGGGAGTTGTTTCTTTTTTAGAGTTGTGATGATGTTGTTTTCCTGCTGCTTTTTTTGTGCTCATGCAAGATCACCTACTTTCTCAAGGCCAGTGGAGAGCAATTTATATGCAGATTTTTGTTCCAGCCAAACATAACATGAGATAATTTTACTCACTAGCACACTGTGAAATCATAAGCTTTCCTCTCCACCTGGTGGCTCAGGACCAACTGGCTATTTCTCATTCTGAGGCAACAATGACGTCTGTCTGTATGCTGCTCCTTGGCGTAAGAAAGTAGCAGTTCATgacattatttaaagaaaatactTTGTCAGACCTGATCAACCTGCACTTGCCCTCACAGACACAAACCTCAGAACGTCCAGTTCATCTTTGAGGGCTCGAGACTCTTCTGCCAGGCTGGTGAGCTCGTCGTTACGGTGCTGAACCTCGATCAGCTGGTTCTCCAACTCTTCACAGTGGATCCGGTAGTCATCCTTAGCAGCCTCCAGCCTGAAGTTCTCCTCCTGCAGTGCCTCGAACTGTTGCTGCAACTGGCTGTGTTTCCTTCCTGACGGGGTGCTTGGGTCGTCGAATGTGTCCAGCTGATTGGCTCGGTCCGTTAGGACGTCATTCTCAGCCAATAAGCTGTTCCGTTCCTCTTGCAGAACAGCCACCTGTCCAGTTACAATAAGGTTTAAAGCCGCTCTCACAAGTGATACAATTTTAACAAAAGTTAAGTGGAATTTAACATACAAACTAAACATATATTTGGGTCAAGTCAGCAGGAAGAATCGGTGCAGTTAAATCTCTTTGGTCAATTATGTCAGGCAAAGCAGCAGACACATTTGAGAGTCAAAGACC

Function

symbol description
hook1 Predicted to enable dynein light intermediate chain binding activity and microtubule binding activity. Predicted to be involved in several processes, including cytoplasmic microtubule organization; early endosome to late endosome transport; and endosome to lysosome transport. Predicted to act upstream of or within protein transport. Predicted to be located in microtubule. Predicted to be part of FHF complex. Predicted to be active in centrosome and cytoplasm. Orthologous to human HOOK1 (hook microtubule tethering protein 1).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: protein Hook homolog 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU133572 True 1125 lncRNA 0.45 2 28569648 28570858

Neighbor

gene id symbol gene type direction distance location
LOC120564927 LOC103354187,LOC101478050 coding upstream 4399 28552630 ~ 28565249 (+)
LOC120564926 NA coding upstream 46024 28521773 ~ 28523624 (+)
LOC120565126 LOC104959127 coding upstream 190617 28373583 ~ 28379031 (+)
LOC120565127 LOC101485093,LOC102207510 coding upstream 215892 28346415 ~ 28353756 (+)
serbp1a LOC106917776,LOC106949688,LOC103463733,LOC104930792 coding upstream 300009 28261055 ~ 28269639 (+)
si:dkey-183n20.15 LOC104925996,LOC104959169,LOC100703951,LOC102207780,LOC101477488 coding downstream 6734 28577592 ~ 28585350 (+)
LOC120565214 LOC103376736 coding downstream 68888 28639746 ~ 28649744 (+)
mmachc mmachc coding downstream 89080 28659938 ~ 28663278 (+)
echdc2 echdc2 coding downstream 176131 28746989 ~ 28755022 (+)
fam20b fam20b,LOC102783880 coding downstream 294785 28865643 ~ 28887058 (+)
LOC120565132 NA non-coding upstream 109438 28449543 ~ 28460210 (+)
G98972 NA non-coding upstream 250760 28312594 ~ 28318888 (+)
G98770 LOC104966597,LOC101073477 non-coding upstream 687337 27879317 ~ 27882311 (+)
G98766 hapln4 non-coding upstream 710525 27855676 ~ 27859123 (+)
G98763 NA non-coding upstream 720710 27848733 ~ 27848938 (+)
G99108 NA non-coding downstream 117024 28687882 ~ 28688118 (+)
G99189 NA non-coding downstream 399629 28970487 ~ 28972086 (+)
LOC120566147 NA non-coding downstream 421370 28992228 ~ 28992610 (+)
G99217 NA non-coding downstream 448677 29019535 ~ 29034406 (+)
G99238 NA non-coding downstream 585826 29156684 ~ 29157107 (+)
LOC120564865 NA other upstream 423323 28137269 ~ 28146325 (+)
pip5k1ca pip5k1c,LOC106917759,LOC106949671,LOC107393349,LOC103370870 other upstream 485261 28027964 ~ 28084387 (+)
ncanb ncan,LOC104966594,LOC107554802 other upstream 736793 27659696 ~ 27832855 (+)
si:ch211-212d10.2 LOC103371119,LOC104950605,LOC100693321,LOC101487565,LOC102778050 other upstream 1192594 27372809 ~ 27377054 (+)
micos13 LOC104918748,LOC103371279,LOC104964520,LOC106536194 other upstream 1773361 26791729 ~ 26796287 (+)
LOC120565530 LOC100702602,LOC101154857,LOC107096371,LOC105928898,LOC101076602,LOC108230771 other downstream 201504 28772362 ~ 28774553 (+)
ralgps2 ralgps2 other downstream 204517 28775375 ~ 28865487 (+)
G99297 NA other downstream 1092775 29663633 ~ 29665090 (+)
si:ch73-389b16.1 ccdc18 other downstream 1856645 30427503 ~ 30429291 (+)
G99545 NA other downstream 2239660 30810518 ~ 30811236 (+)

Expression


Co-expression Network