LOC120565530 (LOC100702602,LOC101154857,LOC107096371,LOC105928898,LOC101076602,LOC108230771)


Basic Information

Item Value
gene id LOC120565530
gene name LOC100702602,LOC101154857,LOC107096371,LOC105928898,LOC101076602,LOC108230771
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 28772362 ~ 28774553 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU133723
AGATCATCAGAGACCCCGTGCAGGAGACTGTCTATGGACACGCATGACCATGCTCTTCTTCTGTTTTCTAGGGGAactatttaataattaattatagTGCTCTTTTAGAACAACTTACGGTAGTCATCTCTATTGAGTTTTCTATTTTCAGGAAACGCTTTTGTAACATCGCTCACCAACTCATTCACCAAGGTCACAAGTAACGTTACCAGTGGATGTGGTGGGAGCTAAGCCTTCAGCACATGCGGTTATAGTAACTGTAAAAGCCACAAGTGCAAAACAAAATATGGCTGGACTTATAAACTTTGAAGATGAGAATGAAGTGAAGcagtttttggacaatttgggaGTGGAGTACAGTTTCCAATGCTACAAAGAAAAGGATCCTGAAGGGTGCCAAAGGCTCTCAGACTACTTGGAAGGGGTGAAGAAAAACTATGAATCTGCGGCACAAGTGCTCAAACATAACTGTGAAACAAATGGACATGGAGAGAGCTGCTATAAACTGGGGGCTTACCATGTCACAGGCAAAGGGCAATTCCAAAGGACTGCCACCCGATATGAATCAAGCTTTGAAGTACGCTAACAGGGCTTGTGAGCTGGGACACGTGTGGGGCTGTGCCAATGCAAGTCGTATGTACAAACTTGGGGATGGCACAGAGAAGGATGACAAGAAAGCAGAGGAGCTGAAGAATCGAGCGAAGGAGCTGCATGGTTTAGAGAAAGAAAGGCAGCTCAAATTTGGGGAATGAATGTGACACTTGAttaaattatcattgtttttgGTTTGCCTACACATCTGGTGTTCAGTCAGGTTGTTTGTGGGGACAAGTATATGtgtgcaaaaacaaaacctgtGCAAGGGTTCGAAGGTAGGAGATgatatgttgtttaaaaaaagaatggctATGAATGTGTTTGCCTCATTTACAGTACGTAGACAGTCAAATTCCGGGATTACTTGACTATCTGTTGGTAGATATCAGCCAAA
>XM_039811388.1
CTGGAGAGGGTTATGAAACCAGGAAGAGATCATCAGAGACCCCGTGCAGGAGACTGTCTATGGACACGCATGACCATGCTCTTCTTCTGTTTTCTAGGGGAactatttaataattaattatagTGCTCTTTTAGAACAACTTACGGTAGTCATCTCTATTGAGTTTTCTATTTTCAGGAAACGCTTTTGTAACATCGCTCACCAACTCATTCACCAAGGTCACAAGTAACGTTACCAGTGGATGTGGTGGGAGCTAAGCCTTCAGCACATGCGGTTATAGTAACTGTAAAAGCCACAAGTGCAAAACAAAATATGGCTGGACTTATAAACTTTGAAGATGAGAATGAAGTGAAGcagtttttggacaatttgggaGTGGAGTACAGTTTCCAATGCTACAAAGAAAAGGATCCTGAAGGGTGCCAAAGGCTCTCAGACTACTTGGAAGGGGTGAAGAAAAACTATGAATCTGCGGCACAAGTGCTCAAACATAACTGTGAAACAAATGGACATGGAGAGAGCTGCTATAAACTGGGGGCTTACCATGTCACAGGCAAAGGTGGAGTGACTGAGTGTCTGAAAACAGCCTACTCCTGCTTTATGCGCTCTTGCAATACCAACGGAAAGAAGTCTATAGATGCCTGCCATAACGTTGGTCTGTTAGCCCACGATGGACGAGTTAATGAAGAAGGACCCGACGTTACAGTAGCTCAGCAGTACTATGAGAAGGCCTGCGCTGGTGGCTTCGCTCCTTCCTGCTTTAACCTCAGTGCTTTGTTCATTCAGGGCAATTCCAAAGGACTGCCACCCGATATGAATCAAGCTTTGAAGTACGCTAACAGGGCTTGTGAGCTGGGACACGTGTGGGGCTGTGCCAATGCAAGTCGTATGTACAAACTTGGGGATGGCACAGAGAAGGATGACAAGAAAGCAGAGGAGCTGAAGAATCGAGCGAAGGAGCTGCATGGTTTAGAGAAAGAAAGGCAGCTCAAATTTGGGGAATGAATGTGACACTTGAttaaattatcattgtttttgGTTTGCCTACACATCTGGTGTTCAGTCAGGTTGTTTGTGGGGACAAGTATATGtgtgcaaaaacaaaacctgtGCAAGGGTTCGAAGGTAGGAGATgatatgttgtttaaaaaaagaatggctATGAATGTGTTTGCCTCATTTACAGTACGTAGACAGTCAAATTCCGGGATTACTTGACTATCTGTTGGTAGATATCAGCCAAATGTATAGATAGAAATGTAATGCAATAAAATGAATTATAATTAA

Function

NR:

description
PREDICTED: cytochrome c oxidase assembly factor 7

GO: NA

KEGG:

id description
K18180 COA7, SELRC1, RESA1; cytochrome c oxidase assembly factor 7

RNA

RNA id representative length rna type GC content exon number start site end site
TU133723 False 991 TUCP 0.43 3 28772388 28774510
XM_039811388.1 True 1287 mRNA 0.43 3 28772362 28774553

Neighbor

gene id symbol gene type direction distance location
echdc2 echdc2 coding upstream 17340 28746989 ~ 28755022 (+)
mmachc mmachc coding upstream 109084 28659938 ~ 28663278 (+)
LOC120565214 LOC103376736 coding upstream 122618 28639746 ~ 28649744 (+)
si:dkey-183n20.15 LOC104925996,LOC104959169,LOC100703951,LOC102207780,LOC101477488 coding upstream 187012 28577592 ~ 28585350 (+)
LOC120564927 LOC103354187,LOC101478050 coding upstream 207113 28552630 ~ 28565249 (+)
fam20b fam20b,LOC102783880 coding downstream 91090 28865643 ~ 28887058 (+)
agxta agxt,LOC102212595,LOC102798621 coding downstream 178822 28953375 ~ 28959096 (+)
dtymk dtymk coding downstream 184601 28959154 ~ 28966583 (+)
hdlbpa hdlbp coding downstream 268351 29042904 ~ 29065102 (+)
sox14 sox14,LOC101484987,LOC103365676,LOC104926635,LOC100695210 coding downstream 491809 29266362 ~ 29268436 (+)
G99108 NA non-coding upstream 84244 28687882 ~ 28688118 (+)
G99007 hook1,LOC102781169,LOC106584290 non-coding upstream 201504 28569648 ~ 28570858 (+)
LOC120565132 NA non-coding upstream 312152 28449543 ~ 28460210 (+)
G98972 NA non-coding upstream 453474 28312594 ~ 28318888 (+)
G98770 LOC104966597,LOC101073477 non-coding upstream 890051 27879317 ~ 27882311 (+)
G99189 NA non-coding downstream 195934 28970487 ~ 28972086 (+)
LOC120566147 NA non-coding downstream 217675 28992228 ~ 28992610 (+)
G99217 NA non-coding downstream 244982 29019535 ~ 29034406 (+)
G99238 NA non-coding downstream 382131 29156684 ~ 29157107 (+)
G99261 NA non-coding downstream 663609 29438162 ~ 29438722 (+)
LOC120564865 NA other upstream 626037 28137269 ~ 28146325 (+)
pip5k1ca pip5k1c,LOC106917759,LOC106949671,LOC107393349,LOC103370870 other upstream 687975 28027964 ~ 28084387 (+)
ncanb ncan,LOC104966594,LOC107554802 other upstream 939507 27659696 ~ 27832855 (+)
si:ch211-212d10.2 LOC103371119,LOC104950605,LOC100693321,LOC101487565,LOC102778050 other upstream 1395308 27372809 ~ 27377054 (+)
micos13 LOC104918748,LOC103371279,LOC104964520,LOC106536194 other upstream 1976075 26791729 ~ 26796287 (+)
ralgps2 ralgps2 other downstream 822 28775375 ~ 28865487 (+)
G99297 NA other downstream 889080 29663633 ~ 29665090 (+)
si:ch73-389b16.1 ccdc18 other downstream 1652950 30427503 ~ 30429291 (+)
G99545 NA other downstream 2035965 30810518 ~ 30811236 (+)
slc1a7b LOC103368436,LOC102788729,LOC102303821 other downstream 2321328 31095881 ~ 31302827 (+)

Expression


Co-expression Network