si:ch73-389b16.1 (ccdc18)


Basic Information

Item Value
gene id si:ch73-389b16.1
gene name ccdc18
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 30427503 ~ 30429291 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU134127
GCAAATAAACCAGTGTTTCATGAGCTACAGCAGCAGGAAGATACCTTAAGTCTACTGTTTGCTTCAGAGTGGAACATTATTGGATGTTAACTTCAGGCTCAGAGGAAGCATCCTTGTGTCATATGCTCACTGAGGTTGTTGGCTGTTGTGTAGCAGGTCACTAAGAGTTGTGCTGTTTAGATTTGTATCACTCAACATGAGTAAGTTTCACAGTGAGCTGACTCAGAGGGAGCAGGACTTGCTGAAGATCCGTCGCGACAGCGACACTAAGGCTGCCGAACTTGTCAAGATGGAGAAGATGCTGGAGCAGACCAAGAACCTGTTTGACAAGAAGACAGAGTCTGGTTCAGATAGCATGGGCTACCAGGAGAACATGGTGGAAGACCTGGAAGAAAAAGTGCGCTCCAGCAGACGACAAAGGAGAAACTCCCTCCATCACACACAGATGCTGGAGAGCCAGATGAAAACAGTGAAGGGCGAGCTGGTGGGCACACTGGACCATCTTCAGGAGCTGAGGAACGTCTTGCGTCGTTCACAGCAGAAAGCAGAAGAGCGCAAAGCTGCGATGGAGAAGCTGGCAGCAGGGCTCAGGTAAAGCTTTAATACACCAACTGAAtgtctgacctgcggcccttgaTCCTGCCAACCAAACTGTGCCGAGTTTACAGAAAAGAAGACCGCACCCATAtgctggtaaaaaaaagaaagagacttcagcCGCTGCATTGGTCTTCCCTCTGTTCTCCTCCATTGCTGCAGTAAGCCATTGTATTGCATCCAAAGACTAAATTGAAAAGACTTTATCCGTGGTATTTCACAACCTGCCTTTAACAAACGTCTAAAGTagctttttcttccttttattGCCCATTTTTGTCCCACTCTCAttattctcatattttgaagGCTTTGTGTTGGCATGCTTTGAATTTTAGGTTGTTGTCCAGAACTTGGGCTTCTCTGTGTCTTCTAGAAATAATTTTAATCCTGCTGCTTATCCCATCAGTGAACCATCCGTTTTAAAACTACTCTgaaatatacatacagtacagtattatacatacagtacagtattccATATTTCTGTGATgttcttttactttttgcaGATTGCACTTAATGAGATTGCTCATCTCAGAGGCAATAATAAGTAGTATTCAGCTCCTAAAAATATATCCTGAGCAGCCCTcataaatgcttttttttctggtttGCTGTCTGCTTATCCatttatgaaaagaaaatatctctaTGATTGATGGGATTCTTATGTGCAGCCCTGGAGATCACCTCAATGTTATTGCTTCATGAACCCGATTTTATTGAATTTATTCCTGCCCATAATATCATGTATATGGTGTTTTCtaatgtaaatctgtaaattcATAATCTTAATCATTGTGATGTTATTACATTCTTAGACACTGATCAATCTCATGATGTATGCATTGTTTCTTGGACAATCTATATTTGTATACACAGCTACAATAtaacaacagaaaatatttgTGATAAACACCACAGAGATAATTTTTGCTTTAATATCTTTGTAGGACTGGCATAtacaaatgtatcttttaaatGAACTGTTTGATAATGTATTGTcagaagtgcaaaaataaatcatcctgagatttaaacattaaatgttGTATTACAGACAGATCTGAAGAGTtttaaac
>XM_039811702.1
ACCAGTGTTTCATGAGCTACAGCAGCAGGAAGATACCTTAAGTCTACTGTTTGCTTCAGAGTGGAACATTATTGGATGTTAACTTCAGGCTCAGAGGAAGCATCCTTGTGTCATATGCTCACTGAGGTTGTTGGCTGTTGTGTAGCAGGTCACTAAGAGTTGTGCTGTTTAGATTTGTATCACTCAACATGAGTAAGTTTCACAGTGAGCTGACTCAGAGGGAGCAGGACTTGCTGAAGATCCGTCGCGACAGCGACACTAAGGCTGCCGAACTTGTCAAGATGGAGAAGATGCTGGAGCAGACCAAGAACCTGTTTGACAAGAAGACAGAGTCTGGTTCAGATAGCATGGGCTACCAGGAGAACATGGTGGAAGACCTGGAAGAAAAAGTGCGCTCCAGCAGACGACAAAGGAGAAACTCCCTCCATCACACACAGATGCTGGAGAGCCAGATGAAAACAGTGAAGGGCGAGCTGGTGGGCACACTGGACCATCTTCAGGAGCTGAGGAACGTCTTGCGTCGTTCACAGCAGAAAGCAGAAGAGCGCAAAGCTGCGATGGAGAAGCTGGCAGCAGGGCTCAGGTAAAGCTTTAATACACCAACTGAAtgtctgacctgcggcccttgaTCCTGCCAACCAAACTGTGCCGAGTTTACAGAAAAGAAGACCGCACCCATAtgctggtaaaaaaaagaaagagacttcagcCGCTGCATTGGTCTTCCCTCTGTTCTCCTCCATTGCTGCAGTAAGCCATTGTATTGCATCCAAAGACTAAATTGAAAAGACTTTATCCGTGGTATTTCACAACCTGCCTTTAACAAACGTCTAAAGTagctttttcttccttttattGCCCATTTTTGTCCCACTCTCAttattctcatattttgaagGCTTTGTGTTGGCATGCTTTGAATTTTAGGTTGTTGTCCAGAACTTGGGCTTCTCTGTGTCTTCTAGAAATAATTTTAATCCTGCTGCTTATCCCATCAGTGAACCATCCGTTTTAAAACTACTCTgaaatatacatacagtacagtattatacatacagtacagtattccATATTTCTGTGATgttcttttactttttgcaGATTGCACTTAATGAGATTGCTCATCTCAGAGGCAATAATAAGTAGTATTCAGCTCCTAAAAATATATCCTGAGCAGCCCTcataaatgcttttttttctggtttGCTGTCTGCTTATCCatttatgaaaagaaaatatctctaTGATTGATGGGATTCTTATGTGCAGCCCTGGAGATCACCTCAATGTTATTGCTTCATGAACCCGATTTTATTGAATTTATTCCTGCCCATAATATCATGTATATGGTGTTTTCtaatgtaaatctgtaaattcATAATCTTAATCATTGTGATGTTATTACATTCTTAGACACTGATCAATCTCATGATGTATGCATTGTTTCTTGGACAATCTATATTTGTATACACAGCTACAATAtaacaacagaaaatatttgTGATAAACACCACAGAGATAATTTTTGCTTTAATATCTTTGTAGGACTGGCATAtacaaatgtatcttttaaatGAACTGTTTGATAATGTATTGTcagaagtgcaaaaataaatcatcctgagatttaaacattaaa

Function

symbol description
ccdc18 Orthologous to human CCDC18 (coiled-coil domain containing 18).

NR:

description
PREDICTED: coiled-coil domain-containing protein 18

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU134127 True 1682 TUCP 0.40 2 30427503 30429291
XM_039811702.1 False 1639 mRNA 0.40 2 30427511 30429256

Neighbor

gene id symbol gene type direction distance location
LOC120565665 LOC103368809,LOC104921761,LOC103397662,LOC101078338,LOC106584167 coding upstream 24491 30397268 ~ 30403012 (+)
LOC120565064 clg23h1orf146,LOC104946869 coding upstream 113031 30311202 ~ 30314472 (+)
btbd8 kiaa1107,LOC103368715 coding upstream 116478 30262977 ~ 30311025 (+)
ephx4 ephx4 coding upstream 166196 30245804 ~ 30261307 (+)
brdt NA coding upstream 182585 30201532 ~ 30244918 (+)
scinla NA coding downstream 21410 30450701 ~ 30460738 (+)
dr1 dr1 coding downstream 48540 30477831 ~ 30481380 (+)
LOC120565046 LOC103368800,LOC102778977,LOC102199240,LOC101469842,LOC100700999 coding downstream 52223 30481514 ~ 30485822 (+)
gng12b NA coding downstream 100677 30529968 ~ 30535873 (+)
sec16b LOC104942848 coding downstream 112066 30541357 ~ 30559154 (+)
G99406 NA non-coding upstream 37864 30388821 ~ 30389639 (+)
G99379 NA non-coding upstream 82329 30211483 ~ 30345174 (+)
G99382 NA non-coding upstream 139386 30287064 ~ 30288117 (+)
G99368 NA non-coding upstream 235663 30185707 ~ 30191840 (+)
G99356 NA non-coding upstream 386608 30039842 ~ 30040895 (+)
G99461 NA non-coding downstream 33269 30462560 ~ 30463389 (+)
G99488 NA non-coding downstream 92354 30521645 ~ 30522066 (+)
G99493 NA non-coding downstream 99535 30528826 ~ 30529088 (+)
G99494 NA non-coding downstream 100318 30529609 ~ 30529820 (+)
G99527 NA non-coding downstream 251215 30680506 ~ 30680716 (+)
G99297 NA other upstream 762413 29663633 ~ 29665090 (+)
ralgps2 ralgps2 other upstream 1562016 28775375 ~ 28865487 (+)
LOC120565530 LOC100702602,LOC101154857,LOC107096371,LOC105928898,LOC101076602,LOC108230771 other upstream 1652950 28772362 ~ 28774553 (+)
LOC120564865 NA other upstream 2281178 28137269 ~ 28146325 (+)
pip5k1ca pip5k1c,LOC106917759,LOC106949671,LOC107393349,LOC103370870 other upstream 2343116 28027964 ~ 28084387 (+)
G99545 NA other downstream 381227 30810518 ~ 30811236 (+)
slc1a7b LOC103368436,LOC102788729,LOC102303821 other downstream 666590 31095881 ~ 31302827 (+)
LOC120564930 NA other downstream 1184598 31613889 ~ 31643446 (+)
G99791 NA other downstream 1193407 31622698 ~ 31625796 (+)
G99803 NA other downstream 1200525 31629816 ~ 31631501 (+)

Expression


Co-expression Network