LOC120566113


Basic Information

Item Value
gene id LOC120566113
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 31023001 ~ 31025476 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU134320
GAGCTGAGccagagttagctagctacgttactagctagctagttgcacCTATTgtagatagctagctagataaatagatcatttttattgatcccaaggGGAAATAATTTGCTGCCTATTTAATAAACGCCTTGATTCAGCATGGTGGATAGCTGCTGTGCGCCAGGATGCCAGAACCATCggaaaaaaagataatggaTAGCATTTTATGAGATGCCTAGCTAAAGCTCCCGAGAGAAGAAGTAAATGGATTGCTTCCATAAAACCTGCTAGAAGCAGACGGAACCAAACCGAGCCATGGGAGCCCACAAACTGGATTTCGGTTATGCTGTGACCACTTTATATCAGGGAAAAAGAGTGACAACCCTCTGTCACCCGACTACAATCCTTCAATCTTCAATCATGTTCCATCCCcggagaagagaaaaagaagaatgaGTTAGATGTAGTCAACAGAAGAACAAACTTCAAAGAATAGAGAAAGCAGCAAAGCCATCAGCTGCAGCAGTAATCTAACAGATTGTCCTCAAGACAACAGCAAGCATCCTACTGCAGACCAGGACCACGCACCTTACCTGGTGGGACAGAGCTTTCACCATTGCAGCCacctccctctggaactccaTACCCATACACATCCGTGTCTGTACTgacctggacacattcaaaacacacctcttcagattagctttccacatacaatagtcttacatttct
>XR_005640333.1
TTCCGGCAGGTGATGTCACGCAATCCCAGCATGCACCAGTCAATATCAAAACACTGCCATCGGAGCTGAGccagagttagctagctacgttactagctagctagttgcacCTATTgtagatagctagctagataaatagatcatttttattgatcccaaggGGAAATAATTTGCTGCCTATTTAATAAACGCCTTGATTCAGCATGGTGGATAGCTGCTGTGCGCCAGGATGCCAGAACCATCggaaaaaaagataatggaTAGCATTTTATGAGATGCCTAGCTAAAGCTCCCGAGAGAAGAAGTAAATGGATTGCTTCCATAAAACCTGCTAGAAGCAGACGGAACCAAACCGAGCCATGGGAGCCCACAAACTGGATTTCGGTTATGCTGTGACCACTTTATATCAGGGAAAAAGAGTGACAACCCTCTGTCACCCGACTACAATCCTTCAATCTTCAATCATGTTCCATCCCcggagaagagaaaaagaagaatgaGTTAGATGTAGTCAACAGAAGAACAAACTTCAAAGAATAGAGAAAGCAGCAAAGCCATCAGCTGCAGCAGTAATCTAACAGATTGTCCTCAAGACAACAGCAAGCATCCTACTGCAGACCAGGTGAAGGAATCTAACAAACAAAgaacttgaaaatgaaaatattctgCCTTTTCCCCATGAAAATGATGATCCAGCAACTTCACCATTAGagagtaaagtttttttttttaagaaacacATTCATTCTCTTGAGTTGGAATGCCAAGCTCTGATAAATGAATATGTTgttaaaagagaaaatgaatacAACTGCACTGAATGAGAATGGAATACATCAAAAACTCTGCTGCCCGTCTCCTCACCCACACCCATTCCCGTGATCACATCACTCCCGTCCTTCAGagcctccactggctccctgtttcCCAACGCATCCAGTTTAGTCCTCCTCACCCACAAAGCCCTCCATAACCAGGCTCCTTCCTCACAGACCTGCTCCACGACCACACTCCCCCCCGTAACCTCTGCTCCTCTGACACTAACCTCCTCTCCCCACCACTCAGGACCACGCACCTTACCTGGTGGGACAGAGCTTTCACCATTGCAGCCacctccctctggaactccaTACCCATACACATCCGTGTCTGTACTgacctggacacattcaaaacacacctcttcagattagctttccacatacaatagtcttacatttctcacctgataattactggttttattgtttaattgcttttaagatgcttgttttattgcttatcttttttaatgtgctatatgtgctggttttactgtatgctatataaataacatttattattattattattattagatgagtctacaaaataatgataaaaaggTCAATATCCTCACTGGTTTACAAACATATTCACCACTAATGACAGTGTTCATTTTGTAGCTCTCTATCTCAAATGTAAGTGCACCCTAACATTATTTCAGCAGTACATGCTGGCTTTAATTAAGATGAGAATTCATTTGTCTTTTGATGTTTTGGCTTATTATTTTGACGTTGATTTGACCGCTGTTTCAAAGCTTTTCAAACACTGTGTTGACGTAATGTATTGCAGATTGGTGCCGAAGTGCAACTTGCTGTGTATGCGTATAGCCTAATACTGTGGACTGTTGGTGCAGTGTTGGTGAATATAAGATGCCTAAACCACGGAAGATTAATTGTTCTAGGGCGATAATGACTATTAGGCAATAATGACAACAAATAAGTATTACAgtagtttatatttatttaataacctttttttaatcatatcaccccttgatttattttcttctgcTGTTACGGTTCCCTGTCATGTCACCAAATGTACAATGTTTAGTCTTGTCCCGCTTGTCTTGTCTATTTTTACTAAATAAAGATTGTGGGCCAACTCCTTTTCTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU134320 False 717 lncRNA 0.44 3 31023063 31024757
XR_005640333.1 True 1941 lncRNA 0.40 2 31023001 31025476

Neighbor

gene id symbol gene type direction distance location
akr1a1b akr1a1,LOC102789595 coding upstream 77376 30933908 ~ 30945625 (+)
magoh magoh,mgn,LOC106560432,LOC107387361,LOC101074452,LOC107731141,LOC107549138 coding upstream 186374 30832801 ~ 30836627 (+)
uck2a uck2,LOC100698935,LOC102786757 coding upstream 193730 30824223 ~ 30829271 (+)
LOC120566104 pbx1,LOC104964292,LOC108272157,LOC103479586 coding upstream 228172 30727013 ~ 30794829 (+)
sec16b LOC104942848 coding upstream 463847 30541357 ~ 30559154 (+)
uhmk1 uhmk1 coding downstream 378297 31403773 ~ 31513916 (+)
mcf2l2 NA coding downstream 757750 31783226 ~ 32159445 (+)
ect2 ect2,LOC102798372 coding downstream 1195557 32221033 ~ 32411447 (+)
si:ch211-51h4.2 LOC102206538,LOC102309665,LOC102076398 coding downstream 2746970 33772446 ~ 33875096 (+)
si:ch211-247n2.1 LOC102307905,LOC103372256,LOC102782276,LOC101477182,LOC102211467 coding downstream 3006414 34031890 ~ 34063575 (+)
G99597 NA non-coding upstream 76912 30945788 ~ 30946089 (+)
LOC120566117 NA non-coding upstream 97503 30924279 ~ 30925498 (+)
G99591 NA non-coding upstream 124615 30898163 ~ 30898386 (+)
G99579 NA non-coding upstream 134398 30888052 ~ 30888603 (+)
G99578 NA non-coding upstream 137030 30885685 ~ 30885971 (+)
G99651 NA non-coding downstream 20429 31045905 ~ 31046300 (+)
G99658 NA non-coding downstream 37135 31062611 ~ 31062864 (+)
G99677 NA non-coding downstream 150314 31175790 ~ 31176024 (+)
G99697 NA non-coding downstream 270019 31295495 ~ 31295722 (+)
G99698 NA non-coding downstream 270557 31296033 ~ 31296235 (+)
G99545 NA other upstream 211765 30810518 ~ 30811236 (+)
si:ch73-389b16.1 ccdc18 other upstream 593710 30427503 ~ 30429291 (+)
G99297 NA other upstream 1357911 29663633 ~ 29665090 (+)
ralgps2 ralgps2 other upstream 2157514 28775375 ~ 28865487 (+)
LOC120565530 LOC100702602,LOC101154857,LOC107096371,LOC105928898,LOC101076602,LOC108230771 other upstream 2248448 28772362 ~ 28774553 (+)
slc1a7b LOC103368436,LOC102788729,LOC102303821 other downstream 70405 31095881 ~ 31302827 (+)
LOC120564930 NA other downstream 588413 31613889 ~ 31643446 (+)
G99791 NA other downstream 597222 31622698 ~ 31625796 (+)
G99803 NA other downstream 604340 31629816 ~ 31631501 (+)
LOC120565823 NA other downstream 736516 31761992 ~ 31767539 (+)

Expression


Co-expression Network