LOC120564930


Basic Information

Item Value
gene id LOC120564930
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 31613889 ~ 31643446 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU134550
GTTCAGGGTCCAGAGTTCAGGGAGTTCCTGCTCACCAAGCTCATCAACGCAGAGCTGGCCTGCTACAAGAGCGAGCGCTTCGCCCGCCTGGAGgagCGTACCCGCGCCGCCCTGCTGGACAGCCTCCACGATGAGCTGTACAGCCGctcccagtgcatgctgggattgACGTCAGGTCTAGAGGAGGAGGGGCGAGCTGAGAACGGACACGCCCACGGAGGTCTGCTGGAGTCCATCAAGAGGGCGATGCGTGGGCGGAGCGTCTCCATGGAGACCATGTCGAGGGGCGGGGCCGGCCTGCCCACCAGTCTGAGTGGGGGGGGCCTGGCACACATCAGCCCCGAGtgtaatGTGAAATCCCCCGTGAAGAGACGCTCAGGACTGTTTCCTCGTCTGCTGAGCGTTGACAGCCAGACGGAGAAACCCAACCTCAGGAGCCTTCTCAGTGAGCAGAGGAGCTTCGACAGCTGCCACCCGACACTGGAGGAGCCGTCCAATCCCAGCTCTCCAGAGGCGGGACAACGGGACagGATTCACATGAAGAAGGAGAGCAGTAAGATTTCCAGATCAACGTCCAGCACCTGCAGCTTCAGCATCCCGGCTGATGACACACACCTgctcGGCCAGGCTGTGACGGTGGAAGGTCAAAGTTCAGGTCCGATCATCGTGTGTCGCAGCCCCACAGagaCGAGGAATAAAAACTCTCCCAGATCCAGCCTCAAGTTCAGGTTTGACAAGTTGAGTCACTCTGCTGCAGTaagtctgacacacacacacacacacacacagacagacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaca
>TU134551
GTGAAGCCCTGATCTAGCCGACTGGCTAGGGTATGAGGTGAAGGTTCAGGTCGATGGTTCACAGCTCAACGTTGACCACAGCAAGGAACGCCAGTTCTCCAACGATCGACGCAAGGACCCACAGTCCAAGTCCAGGTCCACAGCAGCGAGCCACGAGCATCCCCGCTGGCACTAAaaaccagaggtgtatagtccaggtgccagaaagtagaaatcctgtccagcagctgtcccaaccatcactaacgagctcctctaccaggtagaggagctcgttagtgaaaacacctgttctagatgtagaggcagatccaaaaacatggcaggatttatactttctggcacctggactatacaagTCTGCTAAAAATCAGGTGGTTCAGATCGGCCCAGTGAGCCCAAGTCACACTGCCCCCTTTTGTAACACCACACAACACTGTCTGAATCAGTGTGTGAACTTCCGGATCCTCCCTACTGAACAGATCGGAAAGTGGATCCGGTCCAACCAGAGATGCTGGAAGTGCAGAAGGGAACACCTGTCAGCCGAACCTAAGAGACCAGCAGCACCTGGAGATCCTTCATGAGGAGGATGTCAGACGATCATCGCTTCTCATTCGGAGGATGGTCACGCTTTAAAGGCCTCTTCGCAGTCGCCGCAGCCGAGCTGCCGCGCGCCAACGTGACGTCAAGATTACACGGACCTCGCTGGCGTGCCCGGACTTTGAGTCCACTCTATTATCATCAGCGGCGCGCGACAAAGAGGAAACAGGAAGCGTGAACCAGCTGGCCGACAGCGTGCTGCCAGGACTCAGAgggactgcaggtctctctggttAAGATGGGTTCTGTTACGGTGAATGAAAGGCTGGATCCCACCAAGTGGCTCATCCAATCAGATCACAGCACTGACATCaacgctgctgccagttctgccgtcgtttaccttcttcttcttctttagtctttcctcattagcgccccCTGTggtcaggagaagactgcagctgGTGTCGCCACCGCCAGGTATAAACAGTAATGGCGCTCCCGTGATGTCACACTGGTTGGCTCCGGCCAGTTTACCCCACGCTGAAGTTGTGCTCGATTTGATTTTGGCTAAAAGGTCTTTACCTCTAAGCTGTATTTATGCCATTTGGTTTTATGTACACAAGCCATTTTTAAGAGATTCTTGGACTTAGAGGAGGCTGGTTATATCTGGAGGTTACCAGGTTGCTCCTGAGGAGCCTTTTGATAGATTTATTATAATAAAGAGCACGAAAGAAATACCGGTTATGTCTTCCATAGTAGACCTTTATGACAGCCTACACATTTAGGAACAGATATTGGGTTCTGCCCAAAGTCAAGCAACATAAACAGGAACgtaaaaagttactttccatagggggtaactaagtaaagtaaTGGATTACTTTACTTAAgaagtaacgagccaacactactttttaaaagtaacttccccGACACTGTTCAGGATCATCTAGTTCTGAGAGGACAGGAGTCCTCAGTCCACTTTAACCCTCTACAGCTCTCAGGGTTTCTACTTATCCTCTCAAATTCTGTTCAGTTCATGTCAGGGTCTCTGCACAGACCTGATCCCCGTGGGTCCAGAACTAACTCCGCGTTCTGTGGAGGGAGTCACGAGTTAACAGGCTGCTGCTCCGTCTCAATAAAGTTTAGTTTGAATGTTGTTGACTCACATTTTTGCGACCTCCTTGACGACCTCCCTGCACGTCATCTCCTTCATCTGCAGTTTCTCTATCTCGGTCTTGGCGGCTTGTTTCGCTTTTCCGATGGAACAACCCCAGTAACCGTGTGAGATGCCTGATGGGTCGACCATGTAGAGCTGAGGACCGTCATCTTTGTCATACGAGCCCAGAATGAAActgcagagagacaaacacCACTCGCTGTCAGCTGGAGCTCTTTGCTTTTATTCTATCtctggagagtgtgtgtgtgtgtgt
>XM_039810199.1
ATGCACGAGAAGACGACCTGCTCGCCCCCCCCCAGTCCAGCTAGTCTGAGAAGAAGCTGTGAGATTACGAGTTCTAATCCCAAAGCCCAGACTAgaaagtacagcctcacatgGTTGTGTGTTCAGGGTCCAGAGTTCAGGGAGTTCCTGCTCACCAAGCTCATCAACGCAGAGCTGGCCTGCTACAAGAGCGAGCGCTTCGCCCGCCTGGAGgagCGTACCCGCGCCGCCCTGCTGGACAGCCTCCACGATGAGCTGTACAGCCGctcccagtgcatgctgggattgACGTCAGGTCTAGAGGAGGAGGGGCGAGCTGAGAACGGACACGCCCACGGAGGTCTGCTGGAGTCCATCAAGAGGGCGATGCGTGGGCGGAGCGTCTCCATGGAGACCATGTCGAGGGGCGGGGCCGGCCTGCCCACCAGTCTGAGTGGGGGGGGCCTGGCACACATCAGCCCCGAGtgtaatGTGAAATCCCCCGTGAAGAGACGCTCAGGACTGTTTCCTCGTCTGCTGAGCGTTGACAGCCAGACGGAGAAACCCAACCTCAGGAGCCTTCTCAGTGAGCAGAGGAGCTTCGACAGCTGCCACCCGACACTGGAGGAGCCGTCCAATCCCAGCTCTCCAGAGGCGGGACAACGGGACagCAGGATTCACATGAAGAAGGAGAGCAGTAAGATTTCCAGATCAACGTCCAGCACCTGCAGCTTCAGCATCCCGGCTGATGACACACACCTgctcGGCCAGGCTGTGACGGTGGAAGGTCAAAGTTCAGGTCCGATCATCGTGTGTCGCAGCCCCACAGagaCGAGGAATAAAAACTCTCCCAGATCCAGCCTCAAGTTCAGGTTTGACAAGTTGAGTCACTCTGCTGCA

Function

GO: NA

KEGG:

id description
ko05014 Amyotrophic lateral sclerosis
ko05033 Nicotine addiction

RNA

RNA id representative length rna type GC content exon number start site end site
TU134550 False 878 TUCP 0.59 8 31633565 31643446
TU134551 True 1982 lncRNA 0.50 3 31613889 31616309
XM_039810199.1 False 879 mRNA 0.59 8 31633445 31643324

Neighbor

gene id symbol gene type direction distance location
uhmk1 uhmk1 coding upstream 99973 31403773 ~ 31513916 (+)
akr1a1b akr1a1,LOC102789595 coding upstream 668264 30933908 ~ 30945625 (+)
magoh magoh,mgn,LOC106560432,LOC107387361,LOC101074452,LOC107731141,LOC107549138 coding upstream 777262 30832801 ~ 30836627 (+)
uck2a uck2,LOC100698935,LOC102786757 coding upstream 784618 30824223 ~ 30829271 (+)
LOC120566104 pbx1,LOC104964292,LOC108272157,LOC103479586 coding upstream 819060 30727013 ~ 30794829 (+)
mcf2l2 NA coding downstream 139780 31783226 ~ 32159445 (+)
ect2 ect2,LOC102798372 coding downstream 577587 32221033 ~ 32411447 (+)
si:ch211-51h4.2 LOC102206538,LOC102309665,LOC102076398 coding downstream 2129000 33772446 ~ 33875096 (+)
si:ch211-247n2.1 LOC102307905,LOC103372256,LOC102782276,LOC101477182,LOC102211467 coding downstream 2388444 34031890 ~ 34063575 (+)
LOC120565538 cherp coding downstream 2422669 34066115 ~ 34093575 (+)
G99797 NA non-coding upstream 947 31605765 ~ 31612942 (+)
G99786 NA non-coding upstream 57232 31556182 ~ 31556657 (+)
G99785 NA non-coding upstream 58755 31554923 ~ 31555134 (+)
G99781 NA non-coding upstream 65816 31547613 ~ 31548073 (+)
G99744 NA non-coding upstream 95881 31516673 ~ 31518008 (+)
G99823 NA non-coding downstream 3275 31646721 ~ 31647403 (+)
G99821 NA non-coding downstream 5307 31648753 ~ 31663696 (+)
G99822 NA non-coding downstream 10824 31654270 ~ 31665634 (+)
G99824 NA non-coding downstream 12593 31656039 ~ 31699536 (+)
G99836 NA non-coding downstream 71714 31715160 ~ 31715499 (+)
slc1a7b LOC103368436,LOC102788729,LOC102303821 other upstream 311062 31095881 ~ 31302827 (+)
G99545 NA other upstream 802653 30810518 ~ 30811236 (+)
si:ch73-389b16.1 ccdc18 other upstream 1184598 30427503 ~ 30429291 (+)
G99297 NA other upstream 1948799 29663633 ~ 29665090 (+)
ralgps2 ralgps2 other upstream 2748402 28775375 ~ 28865487 (+)
LOC120565823 NA other downstream 118546 31761992 ~ 31767539 (+)
nlgn1 nlgn1,LOC102797975 other downstream 793401 32436847 ~ 32878633 (+)
LOC120566032 naaladl2,LOC102797677,LOC101487368 other downstream 1599767 33243213 ~ 33762919 (+)
G100087 NA other downstream 2231763 33875209 ~ 33878331 (+)
G100174 calr3 other downstream 2861197 34504643 ~ 34507552 (+)

Expression


Co-expression Network