LOC120565823


Basic Information

Item Value
gene id LOC120565823
gene name NA
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 31761992 ~ 31767539 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU134625
CGTTTATGctcttatgattttacttaaataaatacatgttaaaCTTTTAAATCCTCTCCTTGCCTACTTAGTGGATTTTGAAACACAACAAAGTGGTGACCCCGACGCGATCCACTAAGTGGCGCCAGAGGACTTTCCCCTGAATCGAGCAGACAGGACGGACTCCAGTTTTTCCTTCACTCAAAACAGCGCGCTGTCAAAATAAGGTCGCCAGAGCACAGACCCCGGGAGAAGAGGAGCCCCGGAGCAGTGTCAAGGTAGGTGACTGGGTGCGAG
>XM_039811868.1
ATGTACACGTTTATGctcttatgattttacttaaataaatacatgttaaaCTTTTAAATCCTCTCCTTGCCTACTTAGTGGATTTTGAAACACAACAAAGTGGTGACCCCGACGCGATCCACTAAGTGGCGCCAGAGGACTTTCCCCTGAATCGAGCAGACAGGACGGACTCCAGTTTTTCCTTCACTCAAAACAGCGCGCTGTCAAAATAAGGTCGCCAGAGCACAGACCCCGGGAGAAGAGGAGCCCCGGAGCAGTGTCAAGTCTTTACAGTGATGTGACCATGGAAAGTGATGTCTGCAGGACCCTGTCTCTCCTGTATCCCAGAGTGCGTGCAATACAACCGCCTCCAGGAGCAGTCGCCTACCCTGGTAACTATACTTGCATCACACAATCCAACAGCTCTACCATGAATGTGGGACACCTACCTAAGAAGATTTGTATGTACATCTACAACACATCTTTGTTCGTTCCCAATGTCACACAGCCGATGTTTAACAATCAGAGTAAGGGACTCGCTGATGTCTAGTGGATGTGTGGGACACAGCCCCACCTTAGACCATCCTTACCTGCTAAATGGGGGGGCACCTGCGCCTTAGTGTCCCTATTATTGCCAATTACCATGCTTCCTATTAGCGCAGGGAAGCTAGAGGAGACAGTACAGTCTACCTCTCACAAACATTCCTTGAAGAGGGCTAAAAGAGACACTGACTTGGGTTTTGGTACCTGGGGAGACCCAAGCACCCCGTTCGGGTCTATAGATAGTAGGGTGTATATAGATGCAATTGGAATACCAAGGGGTGTACCAGAGGAGTTCAAAGCTCAGAATCAGATAGCAAAGGGTTTTGAGTCTATACTGCCCTGGATAACTACAAACAAGAATGTGGACTGGATAAACTATATATACTACAACCAGCAGAGGTTTTTGAACCGGACTAGGGATGGCCTGAGGGGTGTGTCCGAACAATTAGCCGCCTCCTCACTCATGGCACTTCAGAACCGTATGGCACTAGACATGTTGTTGGCAGAAAAAGGGGGTGTGTGCCACATGTTTGGAGATGCTTGTTGTACATTTATTCCCAATAATACTGCCCCAGATGGTAGCATCACTAGAGCCTTGGAGGGGTTGACCTCTCTAGTCAATGAACTAGCAGAAAACTCGGGTGTGGCTGAAAACCCCATCACCAGTTGGCTGGAGGACGTTTTTGGCAAATACAAAGCAATTGTGCTCTCCATGCTTACGTCCGTGGCAGTGTTTCTGGGCATATTGGTGTGTTGTGGATGCTGTTGCATCCCTTGTTGTCGCACTCTGGTGAACAGATGGATTGATGTGGCTCTGACCAAAAAAGATCCCCAGAAAGATGCTCCTCCAGCGTACTCCATGCCCCTGTTGGGGATGGAGGACGGTGATGAGACTGATTCAGACAATGAAGGAAGTGAATCACCAATGTAATGCTATATTaacctttcttcttcttcccctaGTGCGGCCAATTGTTTACCAGTTTGAGGGCCATATAATTCTAAGCTTAGTAGTATTCACACCTGAGGTGTGAAAACGGGGAtctgtaagaaataaaaataatcagtcaagCTGGCTATGCTTTATGAGGATACAAATTATAGTTgaatagtattgtgtgtttagcggaagagcactgtgacagcttagtcaggcaaaatgagaaaaggatacTGTTGTATGTGCAGAAAGCAGCACTGTATGACGGTGGTCAGAGAGCAACAAGAGTGCAGCAACGaagttaatatcagtttgatatcagtttgaccatgaaaatAAGTTACTCCTCAACCTGTGACAGGCAACAGCAGCGCATTGTTctctctgaccatcagcatAGCTAAAGTCTGTCTAACAACTGATGAAGAGGGCTTGTGCCAAAAGactgggaccagtctgtgcaCCAACCAGGGGACGCCAAGTCTAAACCACGGTACTCCTCCAACctttaataaacaaatcaaaatgctctTAGAGACTGATATATGAATTCATGTATAAGCCAGAAAAATTCAGTCTGAGAGAAGCCTGTGTGCATGCTCAAC

Function

GO: NA

KEGG:

id description
ko04140 Autophagy - animal
ko04138 Autophagy - yeast

RNA

RNA id representative length rna type GC content exon number start site end site
TU134625 False 276 lncRNA 0.49 2 31761999 31764652
XM_039811868.1 True 2067 mRNA 0.46 3 31761992 31767539

Neighbor

gene id symbol gene type direction distance location
uhmk1 uhmk1 coding upstream 248076 31403773 ~ 31513916 (+)
akr1a1b akr1a1,LOC102789595 coding upstream 816367 30933908 ~ 30945625 (+)
magoh magoh,mgn,LOC106560432,LOC107387361,LOC101074452,LOC107731141,LOC107549138 coding upstream 925365 30832801 ~ 30836627 (+)
uck2a uck2,LOC100698935,LOC102786757 coding upstream 932721 30824223 ~ 30829271 (+)
LOC120566104 pbx1,LOC104964292,LOC108272157,LOC103479586 coding upstream 967163 30727013 ~ 30794829 (+)
mcf2l2 NA coding downstream 15687 31783226 ~ 32159445 (+)
ect2 ect2,LOC102798372 coding downstream 453494 32221033 ~ 32411447 (+)
si:ch211-51h4.2 LOC102206538,LOC102309665,LOC102076398 coding downstream 2004907 33772446 ~ 33875096 (+)
si:ch211-247n2.1 LOC102307905,LOC103372256,LOC102782276,LOC101477182,LOC102211467 coding downstream 2264351 34031890 ~ 34063575 (+)
LOC120565538 cherp coding downstream 2298576 34066115 ~ 34093575 (+)
G99837 NA non-coding upstream 45979 31715726 ~ 31716013 (+)
G99836 NA non-coding upstream 46493 31715160 ~ 31715499 (+)
G99824 NA non-coding upstream 62456 31656039 ~ 31699536 (+)
G99822 NA non-coding upstream 96358 31654270 ~ 31665634 (+)
G99821 NA non-coding upstream 98296 31648753 ~ 31663696 (+)
LOC120565209 NA non-coding downstream 61246 31828785 ~ 31831713 (+)
LOC120565211 NA non-coding downstream 64202 31831741 ~ 31832455 (+)
G99880 NA non-coding downstream 95598 31863137 ~ 31863649 (+)
LOC120565210 NA non-coding downstream 253479 32021018 ~ 32028587 (+)
G99907 NA non-coding downstream 420869 32188408 ~ 32188807 (+)
LOC120564930 NA other upstream 118546 31613889 ~ 31643446 (+)
G99803 NA other upstream 130491 31629816 ~ 31631501 (+)
G99791 NA other upstream 136196 31622698 ~ 31625796 (+)
slc1a7b LOC103368436,LOC102788729,LOC102303821 other upstream 459165 31095881 ~ 31302827 (+)
G99545 NA other upstream 950756 30810518 ~ 30811236 (+)
nlgn1 nlgn1,LOC102797975 other downstream 669308 32436847 ~ 32878633 (+)
LOC120566032 naaladl2,LOC102797677,LOC101487368 other downstream 1475674 33243213 ~ 33762919 (+)
G100087 NA other downstream 2107670 33875209 ~ 33878331 (+)
G100174 calr3 other downstream 2737104 34504643 ~ 34507552 (+)
dsg2.1 NA other downstream 4447925 36215464 ~ 36234599 (+)

Expression


Co-expression Network