G100199 (lrrc41)


Basic Information

Item Value
gene id G100199
gene name lrrc41
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 34666482 ~ 34677930 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU135013
CCCCTCAAGTACGCCTACCACAAAGTGTTTTGAAGCCCCGATATCTGTAACTGTACGTCTGATTCATACTCCAAAAAGAAGTGATTTGTCTCGAGGAATAGTTTTGACTTTTGTTATGGTCTGGGCAGATTACGGGTTGCAGGCGTCAGCCATCGATCTACAGTAGCTGCAACGCCATCTATCGCTGAACCATGCTGCAAACATTTTGTGCAAAGAGagaccccccctccctcccccccccaacacaccaTCTTAGAATCAAACTAGCTGCTAAatgcaagaaaaacaaaaacatgatgcCATCGTCCTGTCCTCATAGTGGGGTTGCCAGGTTTAAACAGTCCTAACTCTACGCCACACAAGTGACCCTTAGATTTATCGGTGACTATCTTACTAACCAACAAGATACAATTTGTGAACTACACCAGTAGTTACTTTAGTAGTAAGTCATCCTGGGTCCAGTTAGTTTCCCACCCTCTAACTGAGACATTGAACATGCCATCTGCAGCTGTCAACGTGCTAGGTTGCTACGGCAGTTACAAATGTGAATATATTTTCGCATTATGATAATCAGAATATCTGAGCTCATCTTTTCTGACAGCCAATTGTTTCTTagagaaaataatttaaaaaaaagggcacAAGTTTCAGTTAAAGTCAAAGATATAAGAAAAAGTCCTCGTAACAAACCTGTCCCTCATTTGACAACTGATTTCTTTAGGAGGTATGAATATGgccaaatgttttaatttgatttCCTGTAAAATCACAGTGAATGAGAAGCCTTGGGGATAGCGTGGCCAAGCTGAAATGTTGCGGCAGTGTGTACGAGTGTGCAAGTGTTGTGCGTTTGTGAGAGtgtctttgttttatgtaaGAGATGGTTGTAGATGAGACCCAGCAAATCAACAGATTAGCATGCAGACATAGGGTCTTCACTCTCTTCGACTTGAATTTACTAAAAATATGAGAACATACAAGGAAAACAAAACTGAATTTACAGAAAATAAGTGTTACAGTatttagctttaaaaaaaaaaaaatccactaagaAAAAGATTACGCTCTTTTAATCCGTttttctgattgtttttttttctacttcgtTCCTACTAATGATTTGGTAGTCGGTGTCGATACTGTTCGTCTAATGTAAAGAAAATGACAATGAAGAGACGGTGTGAGAAAGCTGCTGTGAAACTGCTCTTCACCTCTGACGTCAactctcactcacactctGTCCAAGGGAAGACTCTGGAAGTGTAACGGACGTTGGTTtaataaatgattcaaatgtcAAACTAATGGGACGCTCCTTTTATTTTCCAACAGTGCAACCAGCACTCTGATACAAGAGAACAAATGAAATAGATGTAACATTCATAGAACTAATGAAATGTCACAACTAATTAAAGCAAAAAtaaggacttttttttatatatatatttatattttttaattgtaattATGGTAGATGAACAAAATGTCAATAAGCACCCCCTCCTACGGCTTCATCCCCTTCTCTTTCCAGCCGAATGCTCAGAACACTATGTACACATGTTGCACTCTAGTTCGCAATTTAGACAGAATGGAAGTTGTGTATTTAAACATGTTGAACTACTATATGTTTAGAACAATACTGCATGAAATGGACAGTGGAGAAATGACTCTTGCTGCAGGTGTGGTTtgggaagttaaaaaaaaaaagcctaaaaacTTCGGTTAtactttactttaacttttctacgtaagactgacatgacactgtcatgaacgtgtcataaaacattataaacaagtcataaacgtttatgacataactcttttttagtaagtgtcattcggttttgtcatgacacgttagggttagggtcagggttcatgtgtcatgactgtgtcatgacagtgtcatgtgagtgtcatgtgagtgtcatgcattcatgaccgtgtcatgtcactcttatgtagaaaacttaaagtaaagtgttaccaaaactTCATAAAAACCTTTCATTGGAACCTCCTGCTGTCTGAACCGAacacaaaatgaccacaatCACTCTTCTGTCAAACCTCTGCTAACTTTACAGCCACTTTTCGCTCCAACAGGGAGTGTCTGCCACTCCGTTGTTCCTCTAGCTTTGTTCACATGTTGCTGATGTGGTCAGCCATCGTGTCGGTGGAGTTCCATCCTTCCACCAGGAGAACGCAGAAGGGACGGAGCCTCTTCAGCGCCGCGTTCCATGTGTCGGGGTCCCGATCCCCTGGGTTTTTCCTGAGGTCAAGGGTCAATCGGTTTAGCGGAGGATGTGTCCTCAATCTCTTAGCGAACTCCAGCAGCTCAGCGGGCTGAATGAAGTTGGAGCTGTTCAGGACAAAAGGCAGCACATGGAAATTATGgtataatgtaataaaaaataactctAAACTAAATCTACAATGAGTGTTGTGAAACATGATAGTATGGGGCAAACTATGCATTCATTATTGGAAATGTAACGTACACTTTGTGTGGC
>TU135014
CCCCTCAAGTACGCCTACCACAAAGTGTTTTGAAGCCCCGATATCTGTAACTGTACGTCTGATTCATACTCCAAAAAGAAGTGATTTGTCTCGAGGAATAGTTTTGACTTTTGTTATGGTCTGGGCAGATTACGGGTTGCAGGCGTCAGCCATCGATCTACAGTAGCTGCAACGCCATCTATCGCTGAACCATGCTGCAAACATTTTGTGCAAAGAGagaccccccctccctcccccccccaacacaccaTCTTAGAATCAAACTAGCTGCTAAatgcaagaaaaacaaaaacatgatgcCATCGTCCTGTCCTCATAGTGGGGTTGCCAGGTTTAAACAGTCCTAACTCTACGCCACACAAGTGACCCTTAGATTTATCGGTGACTATCTTACTAACCAACAAGATACAATTTGTGAACTACACCAGTAGTTACTTTAGTAGTAAGTCATCCTGGGTCCAGTTAGTTTCCCACCCTCTAACTGAGACATTGAACATGCCATCTGCAGCTGTCAACGTGCTAGGTTGCTACGGCAGTTACAAATGTGAATATATTTTCGCATTATGATAATCAGAATATCTGAGCTCATCTTTTCTGACAGCCAATTGTTTCTTagagaaaataatttaaaaaaaagggcacAAGTTTCAGTTAAAGTCAAAGATATAAGAAAAAGTCCTCGTAACAAACCTGTCCCTCATTTGACAACTGATTTCTTTAGGAGGTATGAATATGgccaaatgttttaatttgatttCCTGTAAAATCACAGTGAATGAGAAGCCTTGGGGATAGCGTGGCCAAGCTGAAATGTTGCGGCAGTGTGTACGAGTGTGCAAGTGTTGTGCGTTTGTGAGAGtgtctttgttttatgtaaGAGATGGTTGTAGATGAGACCCAGCAAATCAACAGATTAGCATGCAGACATAGGGTCTTCACTCTCTTCGACTTGAATTTACTAAAAATATGAGAACATACAAGGAAAACAAAACTGAATTTACAGAAAATAAGTGTTACAGTatttagctttaaaaaaaaaaaaatccactaagaAAAAGATTACGCTCTTTTAATCCGTttttctgattgtttttttttctacttcgtTCCTACTAATGATTTGGTAGTCGGTGTCGATACTGTTCGTCTAATGTAAAGAAAATGACAATGAAGAGACGGTGTGAGAAAGCTGCTGTGAAACTGCTCTTCACCTCTGACGTCAactctcactcacactctGTCCAAGGGAAGACTCTGGAAGTGTAACGGACGTTGGTTtaataaatgattcaaatgtcAAACTAATGGGACGCTCCTTTTATTTTCCAACAGTGCAACCAGCACTCTGATACAAGAGAACAAATGAAATAGATGTAACATTCATAGAACTAATGAAATGTCACAACTAATTAAAGCAAAAAtaaggacttttttttatatatatatttatattttttaattgtaattATGGTAGATGAACAAAATGTCAATAAGCACCCCCTCCTACGGCTTCATCCCCTTCTCTTTCCAGCCGAATGCTCAGAACACTATGTACACATGTTGCACTCTAGTTCGCAATTTAGACAGAATGGAAGTTGTGTATTTAAACATGTTGAACTACTATATGTTTAGAACAATACTGCATGAAATGGACAGTGGAGAAATGACTCTTGCTGCAGGTGTGGTTtgggaagttaaaaaaaaaaagcctaaaaacTTCGGTTAtactttactttaacttttctacgtaagactgacatgacactgtcatgaacgtgtcataaaacattataaacaagtcataaacgtttatgacataactcttttttagtaagtgtcattcggttttgtcatgacacgttagggttagggtcagggttcatgtgtcatgactgtgtcatgacagtgtcatgtgagtgtcatgtgagtgtcatgcattcatgaccgtgtcatgtcactcttatgtagaaaacttaaagtaaagtgttaccaaaactTCATAAAAACCTTTCATTGGAACCTCCTGCTGTCTGAACCGAacacaaaatgaccacaatCACTCTTCTGTCAAACCTCTGCTAACTTTACAGCCACTTTTCGCTCCAACAGGGAGTGTCTGCCACTCCGTTGTTCCTCTAGCTTTGTTCACATGTTGCTGATGTGGTCAGCCATCGTGTCGGTGGAGTTCCATCCTTCCACCAGGAGAACGCAGAAGGGACGGAGCCTCTTCAGCGCCGCGTTCCATGTGTCGGGGTCCCGATCCCCTGGGTTTTTCCTGAGGTCAAGGGTCAATCGGTTTAGCGGAGGATGTGTCCTCAATCTCTTAGCGAACTCCAGCAGCTCAGCGGGCTGAATGAAGTTGGAGCTGTTCAGGACTGATGTCGAGTCGTTTCACTGAGCTCGGTGAGGGTCCTGAGAACAGCTCT

Function

symbol description
lrrc41 Orthologous to human LRRC41 (leucine rich repeat containing 41).

NR:

description
myosin heavy chain, fast skeletal muscle-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU135013 True 2516 lncRNA 0.40 2 34666482 34669040
TU135014 False 2426 lncRNA 0.41 3 34666482 34677930

Neighbor

gene id symbol gene type direction distance location
arhgap39 arhgap39 coding upstream 4813 34528568 ~ 34661669 (+)
LOC120565866 LOC105938272,LOC105937414,LOC105938273 coding upstream 209526 34454381 ~ 34456956 (+)
LOC120565861 LOC103354068,LOC104966713 coding upstream 282455 34380747 ~ 34384027 (+)
LOC120565538 cherp coding upstream 572907 34066115 ~ 34093575 (+)
si:ch211-247n2.1 LOC102307905,LOC103372256,LOC102782276,LOC101477182,LOC102211467 coding upstream 602907 34031890 ~ 34063575 (+)
hyi hyi coding downstream 790081 35468011 ~ 35477553 (+)
ddx10 ddx10 coding downstream 995430 35673360 ~ 35678429 (+)
LOC120566096 NA coding downstream 1021895 35699825 ~ 35737010 (+)
LOC120565108 NA coding downstream 1559922 36237852 ~ 36284806 (+)
LOC120565109 NA coding downstream 1584009 36261939 ~ 36267815 (+)
G100159 NA non-coding upstream 158880 34502564 ~ 34507602 (+)
G100161 NA non-coding upstream 215967 34450281 ~ 34450515 (+)
G100148 NA non-coding upstream 362136 34304090 ~ 34304346 (+)
LOC120565927 NA non-coding upstream 444351 34220623 ~ 34222131 (+)
G100043 NA non-coding upstream 1461736 33204180 ~ 33204746 (+)
G100215 NA non-coding downstream 59577 34737507 ~ 34793890 (+)
G100257 NA non-coding downstream 171273 34849203 ~ 34849492 (+)
G100259 NA non-coding downstream 174383 34852313 ~ 34852518 (+)
G100279 NA non-coding downstream 196412 34874342 ~ 34877423 (+)
G100337 NA non-coding downstream 800741 35478671 ~ 35479610 (+)
G100174 calr3 other upstream 158930 34504643 ~ 34507552 (+)
G100087 NA other upstream 788151 33875209 ~ 33878331 (+)
LOC120566032 naaladl2,LOC102797677,LOC101487368 other upstream 903563 33243213 ~ 33762919 (+)
nlgn1 nlgn1,LOC102797975 other upstream 1787849 32436847 ~ 32878633 (+)
LOC120565823 NA other upstream 2898943 31761992 ~ 31767539 (+)
dsg2.1 NA other downstream 1537534 36215464 ~ 36234599 (+)
G100568 lmnb2 other downstream 1795608 36473538 ~ 36475195 (+)
smim24 NA other downstream 1817554 36495484 ~ 36534582 (+)
sass6 sass6,LOC102776185 other downstream 1918111 36596041 ~ 36611746 (+)
G100671 NA other downstream 2017507 36695437 ~ 36698869 (+)

Expression


Co-expression Network