sass6 (sass6,LOC102776185)


Basic Information

Item Value
gene id sass6
gene name sass6,LOC102776185
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 36596041 ~ 36611746 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU135506
TCACGAAAATACTCACTTGAATAATAGTTTGTCTcatagtttgttttgttttttacacaaaTTACTTTGGTGAAATGTTAAAATTACGAACATCTCCTTCAATAAAAATCCACAATCTATGGGAGTGTACTAGTTTGAAGATCAAAGGACCTGgaccttttttttatgttttggggcattttcagccttcatTTGgacaggacagcagaagacatggaaagagaaagagggggaacgatatgcagcaaagggccgcaggccggAGTCGAACCCAGACCCGCTGCGTCAAGGCGTAAACCCTCTATACAGTACATGGGCACCCGCTCTagccaactgagctatccagacGCCCGACCTGGTCCGTTTTTTGACCACGACTCATCTTCtgttgtgtttgtcttttaACCACAGTTATCAATTGGCTTAACAAGCAGCTGAATGAGAAGCAGCTGTCCAGGAAGTCTCAGGAATCTGTGGACAGTCCTTCACTTCTGCCCACAACAACTGGACTGAGGgcccAGTTTTATCCTCAGACAGGCAGACTTGATGGGACTCCTGCTGAACAGAGATCAGCACAGCTGCCTGCCAGACACACgGGAGACTCTGCAGGTCTGGATTCAAAGTACTTTGAGAGGAGAGATGATAGCATCCCAATCTATGGTCTGTCCTCTAATCTGCTTAGCAAAGAGTTCCCTCAGCCAGCAAAGCCATCCGTAGTGTCTGCTTACTTCTCTGCATGAGCAAAATggaagacccccccccccccatccgtCATGGCTTCTGTTCAGAACTCACTTGTCCTTAAgtatatgttttaatttttgtgTGCTGATGTTATACGCATACAGGAAATGCTGTTAAAACCTTCTGTATGCTGGATTCCAGTGATCATGGAGAATGCGTCCAAGTcttcaaattaaaataatagTATCTTAAGTTTgttattgtttatattctttTTGTTGTCTGTATTTGTTATGAAGTGTAGTCTTTAATAAACAGTTTTTT
>XM_039812354.1
gaagaagaagaagaagaagaagaagagagttcCTGTTCCGTTTCCAGGGCGATAGTTGGCGGCTCAAAGCGCCAAATCCAAACACGGAGAAAGATAGAGCAACATGTCCAAGTGAAGGAGCACTAGCCGGGTTACTGACGGACTCTCTGCCGCTCCCTCTGGTCCGACATGGAGACACTGTATAGCAAGACGCTGCACGTCCACGTCAGGGCCAGGGACTGCGAGGACAGGAAAGCTAATATCCGTGTCACCATTGACCTCCAGCTGACAACCAGTCCAGTTCACAAAAGGGATCTTCTAGTAAGACTCACCGATGATGTGGATCCATACTTTCTCTTCAACCTGTCCATATCGGAAGAGGATTTCCAAAGTCTGAAGGTGCAGCAGGGGCTCCTCATAGACTTTGCATCATTTCCTCAGAAGTTTATCGACCTGCTGAATCTGTGCTGTTCCGAGCAGGAGTCGGACAATCCCAGGTTCCTCCTGCACCTGTCCAGTCCGTCTGCAGTGCTCGATGGGCCGGCCAGCTTCAGTGTTGTAGAGACCAATGCATTCAAACACCTGAACCACTTGTCTCTGCGGCTGGTCCCAGGCTCTGACAAAGAGGTTAAAGACTATCTGGCAGTGTGTCTGTCCTCTCTCAAGGCAGAGAAGCAGGCCCTGGAGATGAAGCTGAAGAAGACCGAAGACGATCTGTCCAGGCAGCTGAGTTATGCTCAGCAGACTCTCTCCGAGAAGACTAAAGAGTTGGACAAACTGCGTTCAGAGTGGACGAGTCAGAGCAGCTCTCTGTCCAGCCGCCATTCTCAGGAGTTACAATCGGAGCGAGAGAAGGCTGCGGAGTACCAGAGCAGGCTTCAGCAGCAGACGGAGCAGCTCCGCCACGAGCTGGAGACCGCTCATAAGCAGAGCAGCCAGCAGCTTCAGAGCCGCGTGTCGGAGCTGGAGGCCTCCAGCAGAGAGCTGACCGAGAGGAAGTACAAGAACGAGGCGCTCATCAGGGACCTGAAGATCAAATTAGTGGGCGCCGAGGAGgagtgcCAGCGGTCCAAGCAGCAGCTCCTGTCTCTGCGGAGGGAGAACGGCGCTCTGGACTCGGCGGTCCATGATGGCGAGCGAGCGCTGAGCCAGCTGCAGATGAGGGTGGCCGTTCTGGAGCAGGAGGTCAAAGACAAGGATCAGCTGATGCGCCGCACCAAAGACGTGCTGGAAGCCACGCAGCAGCAGAAGGAATCAATGGAAGAAAATGCTGAAAGTAAAGACGGTCAGATAAAAAAGCTCGAGGCCACGGTGAAATCCCTGTCTGAGGAGCTGATAAAGGCTAACGGCATCATTAAGAAGCTGCAGGGCGACGTTCGAGGCCTGGTTGGAAAAATCAAAGTCAAGAACACGGTGACCGTGACCCAGGAGAAGGTCCTCCAAGAAACCTCTGAAAAACTGGAGAACGTTGAAAAGGATCTGCAGAGCACTCGGCAGCAGCTCAGCACCAAGGAGGAGCAGGCGTCCAGGCTGAAGGAGCAGTTGGAGACGACTGTACAGAAGCTAAATGAAAGCAGAGAGGTGTTAAAAACCAATGAGAACGTTATCAATTGGCTTAACAAGCAGCTGAATGAGAAGCAGCTGTCCAGGAAGTCTCAGGAATCTGTGGACAGTCCTTCACTTCTGCCCACAACAACTGGACTGAGGgcccAGTTTTATCCTCAGACAGGCAGACTTGATGGGACTCCTGCTGAACAGAGATCAGCACAGCTGCCTGCCAGACACACgGGAGACTCTGCAGGTCTGGATTCAAAGTACTTTGAGAGGAGAGATGATAGCATCCCAATCTATGGTCTGTCCTCTAATCTGCTTAGCAAAGAGTTCCCTCAGCCAGCAAAGCCATCCGTAGTGTCTGCTTACTTCTCTGCATGAGCAAAATggaagacccccccccccccatccgtCATGGCTTCTGTTCAGAACTCACTTGTCCTTAAgtatatgttttaatttttgtgTGCTGATGTTATACGCATACAGGAAATGCTGTTAAAACCTTCTGTATGCTGGATTCCAGTGATCATGGAGAATGCGTCCAAGTcttcaaattaaaataatagTATCTTAAGTTTgttattgtttatattctttTTGTTGTCTGTATTTGTTATGAAGTGTAGTCTTTAATAAACAGTTTTTTCATCCCA

Function

symbol description
sass6 Acts upstream of or within several processes, including embryonic cleavage; microtubule cytoskeleton organization; and spermatogenesis. Located in centrosome. Is expressed in blastomere and unfertilized egg. Human ortholog(s) of this gene implicated in primary autosomal recessive microcephaly 14. Orthologous to human SASS6 (SAS-6 centriolar assembly protein).

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K16487 SAS-6, SASS6; spindle assembly abnormal protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
TU135506 False 1008 lncRNA 0.43 4 36608898 36611739
XM_039812354.1 True 2186 mRNA 0.51 16 36596041 36611746

Neighbor

gene id symbol gene type direction distance location
nfic nfic,LOC102792909 coding upstream 1601 36563454 ~ 36594440 (+)
ctns ctns coding upstream 173566 36409868 ~ 36422475 (+)
b4galt6 b4galt6,LOC104925469 coding upstream 222435 36351943 ~ 36373606 (+)
ttr ttr coding upstream 246311 36343295 ~ 36349730 (+)
LOC120565107 NA coding upstream 268663 36298542 ~ 36327378 (+)
dohh dohh,LOC102789931 coding downstream 92706 36704452 ~ 36712253 (+)
rsph4a LOC104961853 coding downstream 101629 36713375 ~ 36720899 (+)
lonp1 lonp1 coding downstream 113443 36725189 ~ 36741996 (+)
plpp6 plpp6,LOC103354162,LOC102785296 coding downstream 263901 36875647 ~ 36882393 (+)
LOC120566029 LOC104964070,LOC103354160 coding downstream 277672 36889418 ~ 36917143 (+)
G100566 NA non-coding upstream 53867 36469528 ~ 36542174 (+)
G100584 NA non-coding upstream 65166 36529802 ~ 36530875 (+)
G100578 rpl36,LOC106560598 non-coding upstream 81235 36511245 ~ 36514806 (+)
G100537 NA non-coding upstream 110349 36483286 ~ 36485692 (+)
G100557 NA non-coding upstream 134571 36459521 ~ 36461470 (+)
LOC120565379 NA non-coding downstream 31160 36642906 ~ 36651890 (+)
G100667 LOC102192127,LOC101475420,LOC102307792 non-coding downstream 62703 36674449 ~ 36677928 (+)
G100668 NA non-coding downstream 66752 36678498 ~ 36678830 (+)
G100699 NA non-coding downstream 142834 36754580 ~ 36754825 (+)
G100714 LOC104926011,LOC100703953 non-coding downstream 252234 36863980 ~ 36868994 (+)
smim24 NA other upstream 61459 36495484 ~ 36534582 (+)
G100568 lmnb2 other upstream 120846 36473538 ~ 36475195 (+)
dsg2.1 NA other upstream 361442 36215464 ~ 36234599 (+)
G100174 calr3 other upstream 2088489 34504643 ~ 34507552 (+)
G100087 NA other upstream 2717710 33875209 ~ 33878331 (+)
G100671 NA other downstream 83691 36695437 ~ 36698869 (+)
prrc2c NA other downstream 320909 36932655 ~ 36958360 (+)
G100843 NA other downstream 852168 37463914 ~ 37490072 (+)
usp46 usp46 other downstream 2254689 38866435 ~ 38880605 (+)
prdm5 prdm5 other downstream 2711838 39323584 ~ 39361733 (+)

Expression


Co-expression Network