usp46 (usp46)


Basic Information

Item Value
gene id usp46
gene name usp46
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 38866435 ~ 38880605 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU136417
CAGCGGCCCAAACAGAGGCCATTACATCACCATCGTGAAGAGTCACGGCTTCTGGCTGCTGTTTGACGATGACATTGTGGAGAAAATTGACGCCCAGGCCATCGAGGAGTTTTACGGGCTTACCTCAGACATCTCCAAGAACTCTGAGTCAGGATACATCCTCTTCTACCAGTCCAGGGAGTGACTGGAGCTGGATCAGGGACACAGGAGAAGACTAAAATAGGATGAGAcctttttattgttctttttttttgttttaccttcAGCCTAACAGACCCAGACTCCTGCCATCTCCATCCCATCCTGTTCCCATCCTCCAAGTCCGACCTCGTGCCAACCCTCTGTCCCATCCCCAACCTCTGGCTTTACCTGTGCTtcatctctctcactctctctgtgtaACTTGCTTCTTGCCTTTTAGTCACCTGCATCTGGactgcactttaaaaaatgaaagCAAAAAAATGCTCAAcagcatgacaaaaacaaaaaaggagtcTATGTTCACATGGAGTCCCACACGCTTAGGTGTACACTGGTGGGAGGAGCCTGCAGAGGTGATTCTCTACCAGATACAAGGTTGGGTTGAAGGGTCTGGTGCAACACAGACTGTTGTCAGAAATTGTTGAAatcatttatatgtatataaggTCTTCTTCCATGATGCGTCACCCCTGTTTAGTTCCTTTGATTAGGGCTATTTTCCCCATCACCTTTGCTATGTTCCTGTCTCTGGCAGATGCATGAGAAGTGAATCAAGTTGGAGACAAACACTGTATAATATATTTCATGCATTTTCAATGGTTTAGAAGCAATATTTGAGCACTAATTAGAGAGCACTCACaagcttaaaaaagaaaagaaaaggtacGGTCAACAGCTGAAACTGTTGACAGTACAGAGGTTGTTTTGCCCCACAGAGAACCACTCTGTGAGCCGCTGTGTGTGCTTTAACTCATGTCAGATAATCAGATATGATCAACACTTAATCCAACATGCTCCAACACTACACACGAAAGGAAATCCTGCTGTTTTCTCTGTCGGATGGATCTCCATTCAAATCAGCTGAATCTTTATACGTTTTCATTCGGATAGAAAACCCATATGTATTGTACTTAacatatttatttctgttatttgTAGTGCAGACTGGTATATAATGAAGGTTAATGTGTAATATGGCTCTTTTGAGAGCTTTGTATGTTAAGACTCTTTTGTCTAAGCTCTGTGTGAAGGACACGGTGTATGTAATACACAACTTAAAGCTGGGGTAGGCAGTTTTGTTTTGCGTCATTGAGCAAAAATTCTAGAATAGTCTTTTAACATATTGcaattcaagtggtctgaggACTTTTGCACCTACTATTGGCTTTGTTTTTTTAGGCTTTAGAAAAGCCTAGCCTGTGACGatagactttggccaatcacattTTAGAGAGAGGGCGTTCCTAGTCGCTGTTTTACACATGCAGATGCACGTCTCTTCAGATGGTGAAAGCCTGATTCAATTGCGGAAGATCCTGCAGAAAAAGTTTCCAGCATTGGCAACAACTGCCTTCACTGCAAAGCAACCCAACAAAATTACAGCAGACTTATTAAAAAAAGTCTATAAGAGAGTCTGACAAACACAATAAAACGCACGTAAATATTGTCAAAGCATGTCGGAGATTGTGAGAAAATGTTGCGGGCTTTGAaattgtggtgtttttttgtttttttcatttccagaaaACTGCCTACCCCAGCTTTAATAGGACAGCTGAAAATAATTGTATCagttatatttttaattgttaaaaGTTTACATGTTAAATCATAAGATAAGACATGTTAACATGATGCAAGTGAGACCCAACCCTGAACTGCCCAATCTTTCAattgacaaaaaagtgaaaagagtGCAATAAGAGGTGAAGGTGTCCAGTGTGGGAGTTCCCAGTGACACTAatataaagtacatttaaatgtTAGTAGTAGATGTGTTTCTTAAGTGGCTGATTTCTTTCCcagtgctgtgtgtttgtgtggttgtaATATTCAAAGTAAATGCCCCCACCCCCTTCACCATGTGCAATACACACTACCTGCTAGGATGTTAGCTTAGCTACAGCGTTCTTTcctccattttatttttataaccaTACCCAGcattgtcttttctttctcttttcattcCCATGCTGAACTACAGCTTAGTAGTTTTCTCTTGGTTTGTCTCTGACTTTGATGCCGTAAACTGTGTGTGTCATATGTAGCACATTGGAATCCTAAGTCCCATAGGAGTCCCATTTAAGCCTTGATGTTGATTCATACGACATCCCTTGTACTGTAGATGTTTTTTCTCTTTGGCTCATTCCCCAGGGTCTGTGGCCACGCCCTGTGGAATAGTGTGACATCAAACTACTTGTTTTCATGTGAATGCCATTCCTATTTGCTGCACATCAGCAGAATTACCATTTCAAATGCATCTCATTATAAATAAGAGGTAGGAATAGGATTCATTTGCtagctttgtgtctgtgtctattcAAGAAAGGCAGAATTTTAAAGTGAAAATAGTGAAACTCTGGGTTTTGAATGCACTTGTTTCTGCCGTCTCTTCCGTTTAGTCTGTTACTGGGTGAAGTCACGAGGAATACGTGCCAAACTGGAGTCAATACTGACCATGCAACAGTCTTTAACAGAGCattattttctttgtaaagATACAGCTGTACATATTATGTAGAGAAACACTTCTGGAAAtaggaaaatatttttttaaagtgaagatctttaaaatgtaaagacactCATGGCAAATGATTTTAGCTTAATGCTGACCATAAAATGAAACCCTGTTAAGGAAATACTGTGCTATTTTACAATCACTCAATTACATAGTCAATCAGATTTGTCACCATctgtcatattttttattttatttttctgggtTAAACTGAGCCAGGATAGAAAACCGTAGCACATTTTAGACCTGcgtgagagaaaagagagactcTTAACGCGCCGATCTTCCATCAACACTTATGCACTCGCCCTCACTGGAACGCTCAGTCGTTGCACTTGGTCTGATATATCTTACTGTGATAGTGTTCTACCTAGGAGAGCTGGGATCTGTGTGAGGGAAGGAAGAGAAGAATCCAGAGTCTCCATCTAGTTGTAAACTGAAAGTGCACTTTATCAATGATGAGCTTCAATGCTTTAACATGAAGAACCACAGTTTAACGCACTCATTTTGAGTTATTTCTTCTGTTCAATAAAATGACTTTCAACTAACTTTCTGGactgtttgtcttttttctaG
>XM_039811582.1
TCGCTTCCTCACACAGCATGCTTGTTTCCTGGTCGTTGCTAACAACCTGCTGCCTGCAACTGGTCTGTCCGCCGTCCCCTCATACCTTGGCGGTTCCCTGCTGTAGGGTTTTGAGATGTGTGTAACAATGAAGCCGTGTCGACGCTGAGTGCAGCGGGACTCTCAGCTCCGTGCTGGCTGCATGGTGCTCCGCGTCTCTCTGCCCGCTTTCTGACGCTTGAGGTTTGCAGTCTGGCCTCCAGCCGCGGCTGCGAATTAACTTCATTTCTCAGCGTCGCCTTGCTctgaaatcatgttttttttataaagatggCGGCGAGGAGGACACTGTGAACTAAATGACTGTCAGAAACATCGCCTCCATTTGTAATATGGGCACCAATGCCTCTGCTCTGGAGAAAGACATCGGCCCGGAGCAATTTCCAATCAATGAACACTACTTTGGATTGGTCAATTTTGGAAACACATGCTACTGTAACTCGGTGCTCCAGGCTCTCTACTTCTGCCGGCCTTTCCGGGAGAATGTGCTGGCTTACAAAGCccagcagaagaagaaggagaaccTGCTCACATGCCTGGCTGACCTCTTCCACTCCATTgccacacagaagaagaaagttGGTGTCATCCCGCCCAAGAAGTTCATCTCCCGCCTACGGAAAGAGAACGATCTGTTTGACAACTACATGCAACAGGATGCCCACGAATTCCTCAACTACCTGCTGAACACGGTGGCCGACATCCTGCAAGAGGAGAAGAAGCAGGAAAAGCAGAACGGGCGCCTCAAGAACAACGGCACCGCCGTCACCACGGAGACCGAGACTGAGAACAAGACAGAGCCCACATGGGTTCACGATATCTTCCAGGGCACACTGACCAATGAGACACGCTGCCTCAACTGTgaaacgGTAAGCAGCAAAGATGAAGATTTTCTAGATCTATCTGTGGATGTGGAGCAGAACACGTCAATAACACACTGCCTCAGGGACTTCAGTAACACAGAGACGTTGTGCAGTGAATACAAATACTACTGTGAGGCATGCTGCAGCAAGCAGGAAGCACAGAAGCGGATGCGCGTCAAGAAGCTTCCTATGATCCTGGCACTACACCTGAAGAGGTTTAAGTACATGGAGCAGCTGCACCGCTACACCAAGCTGTCCTATCGAGTGGTGTTCCCCCTGGAACTCCGTCTGTTCAACACGTCCGGGGACGCAGTCAACCTGGATCGCATGTACGATCTCGTAGCTGTGGTGGTTCACTGTGGCAGCGGCCCAAACAGAGGCCATTACATCACCATCGTGAAGAGTCACGGCTTCTGGCTGCTGTTTGACGATGACATTGTGGAGAAAATTGACGCCCAGGCCATCGAGGAGTTTTACGGGCTTACCTCAGACATCTCCAAGAACTCTGAGTCAGGATACATCCTCTTCTACCAGTCCAGGGAGTGACTGGAGCTGGATCAGGGACACAGGAGAAGACTAAAATAGGATGAGAcctttttattgttctttttttttgttttaccttcAGCCTAACAGACCCAGACTCCTGCCATCTCCATCCCATCCTGTTCCCATCCTCCAAGTCCGACCTCGTGCCAACCCTCTGTCCCATCCCCAACCTCTGGCTTTACCTGTGCTtcatctctctcactctctctgtgtaACTTGCTTCTTGCCTTTTAGTCACCTGCATCTGGactgcactttaaaaaatgaaagCAAAAAAATGCTCAAcagcatgacaaaaacaaaaaaggagtcTATGTTCACATGGAGTCCCACACGCTTAGGTGTACACTGGTGGGAGGAGCCTGCAGAGGTGATTCTCTACCAGATACAAGGTTGGGTTGAAGGGTCTGGTGCAACACAGACTGTTGTCAGAAATTGTTGAAatcatttatatgtatataaggTCTTCTTCCATGATGCGTCACCCCTGTTTAGTTCCTTTGATTAGGGCTATTTTCCCCATCACCTTTGCTATGTTCCTGTCTCTGGCAGATGCATGAGAAGTGAATCAAGTTGGAGACAAACACTGTATAATATATTTCATGCATTTTCAATGGTTTAGAAGCAATATTTGAGCACTAATTAGAGAGCACTCACaagcttaaaaaagaaaagaaaaggtacGGTCAACAGCTGAAACTGTTGACAGTACAGAGGTTGTTTTGCCCCACAGAGAACCACTCTGTGAGCCGCTGTGTGTGCTTTAACTCATGTCAGATAATCAGATATGATCAACACTTAATCCAACATGCTCCAACACTACACACGAAAGGAAATCCTGCTGTTTTCTCTGTCGGATGGATCTCCATTCAAATCAGCTGAATCTTTATACGTTTTCATTCGGATAGAAAACCCATATGTATTGTACTTAacatatttatttctgttatttgTAGTGCAGACTGGTATATAATGAAGGTTAATGTGTAATATGGCTCTTTTGAGAGCTTTGTATGTTAAGACTCTTTTGTCTAAGCTCTGTGTGAAGGACACGGTGTATGTAATACACAACTTAAAGCTGGGGTAGGCAGTTTTGTTTTGCGTCATTGAGCAAAAATTCTAGAATAGTCTTTTAACATATTGcaattcaagtggtctgaggACTTTTGCACCTACTATTGGCTTTGTTTTTTTAGGCTTTAGAAAAGCCTAGCCTGTGACGatagactttggccaatcacattTTAGAGAGAGGGCGTTCCTAGTCGCTGTTTTACACATGCAGATGCACGTCTCTTCAGATGGTGAAAGCCTGATTCAATTGCGGAAGATCCTGCAGAAAAAGTTTCCAGCATTGGCAACAACTGCCTTCACTGCAAAGCAACCCAACAAAATTACAGCAGACTTATTAAAAAAAGTCTATAAGAGAGTCTGACAAACACAATAAAACGCACGTAAATATTGTCAAAGCATGTCGGAGATTGTGAGAAAATGTTGCGGGCTTTGAaattgtggtgtttttttgtttttttcatttccagaaaACTGCCTACCCCAGCTTTAATAGGACAGCTGAAAATAATTGTATCagttatatttttaattgttaaaaGTTTACATGTTAAATCATAAGATAAGACATGTTAACATGATGCAAGTGAGACCCAACCCTGAACTGCCCAATCTTTCAattgacaaaaaagtgaaaagagtGCAATAAGAGGTGAAGGTGTCCAGTGTGGGAGTTCCCAGTGACACTAatataaagtacatttaaatgtTAGTAGTAGATGTGTTTCTTAAGTGGCTGATTTCTTTCCcagtgctgtgtgtttgtgtggttgtaATATTCAAAGTAAATGCCCCCACCCCCTTCACCATGTGCAATACACACTACCTGCTAGGATGTTAGCTTAGCTACAGCGTTCTTTcctccattttatttttataaccaTACCCAGcattgtcttttctttctcttttcattcCCATGCTGAACTACAGCTTAGTAGTTTTCTCTTGGTTTGTCTCTGACTTTGATGCCGTAAACTGTGTGTGTCATATGTAGCACATTGGAATCCTAAGTCCCATAGGAGTCCCATTTAAGCCTTGATGTTGATTCATACGACATCCCTTGTACTGTAGATGTTTTTTCTCTTTGGCTCATTCCCCAGGGTCTGTGGCCACGCCCTGTGGAATAGTGTGACATCAAACTACTTGTTTTCATGTGAATGCCATTCCTATTTGCTGCACATCAGCAGAATTACCATTTCAAATGCATCTCATTATAAATAAGAGGTAGGAATAGGATTCATTTGCtagctttgtgtctgtgtctattcAAGAAAGGCAGAATTTTAAAGTGAAAATAGTGAAACTCTGGGTTTTGAATGCACTTGTTTCTGCCGTCTCTTCCGTTTAGTCTGTTACTGGGTGAAGTCACGAGGAATACGTGCCAAACTGGAGTCAATACTGACCATGCAACAGTCTTTAACAGAGCattattttctttgtaaagATACAGCTGTACATATTATGTAGAGAAACACTTCTGGAAAtaggaaaatatttttttaaagtgaagatctttaaaatgtaaagacactCATGGCAAATGATTTTAGCTTAATGCTGACCATAAAATGAAACCCTGTTAAGGAAATACTGTGCTATTTTACAATCACTCAATTACATAGTCAATCAGATTTGTCACCATctgtcatattttttattttatttttctgggtTAAACTGAGCCAGGATAGAAAACCGTAGCACATTTTAGACCTGcgtgagagaaaagagagactcTTAACGCGCCGATCTTCCATCAACACTTATGCACTCGCCCTCACTGGAACGCTCAGTCGTTGCACTTGGTCTGATATATCTTACTGTGATAGTGTTCTACCTAGGAGAGCTGGGATCTGTGTGAGGGAAGGAAGAGAAGAATCCAGAGTCTCCATCTAGTTGTAAACTGAAAGTGCACTTTATCAATGATGAGCTTCAATGCTTTAACATGAAGAACCACAGTTTAACGCACTCATTTTGAGTTATTTCTTCTGTTCAATAAAATGACTTTCAACTAA

Function

symbol description
usp46 Predicted to enable thiol-dependent deubiquitinase. Predicted to be involved in protein deubiquitination and regulation of GABAergic synaptic transmission. Predicted to act upstream of or within protein phosphopantetheinylation and proteolysis. Orthologous to human USP46 (ubiquitin specific peptidase 46).

NR:

description
PREDICTED: ubiquitin carboxyl-terminal hydrolase 46

GO:

id name namespace
GO:0006511 ubiquitin-dependent protein catabolic process biological_process
GO:0004221 obsolete ubiquitin thiolesterase activity molecular_function
GO:0008234 cysteine-type peptidase activity molecular_function

KEGG:

id description
K11842 USP12_46; ubiquitin carboxyl-terminal hydrolase 12/46

RNA

RNA id representative length rna type GC content exon number start site end site
TU136417 False 3304 TUCP 0.40 2 38877211 38880605
XM_039811582.1 True 4540 mRNA 0.43 9 38866435 38880577

Neighbor

gene id symbol gene type direction distance location
scfd2 scfd2 coding upstream 23764 38719919 ~ 38842671 (+)
lnx1 lnx1 coding upstream 185039 38636809 ~ 38681396 (+)
kdr kdr coding upstream 456218 38379216 ~ 38410217 (+)
clocka clock,LOC102778122 coding upstream 521772 38317933 ~ 38344663 (+)
nmu NA coding upstream 552085 38307874 ~ 38314350 (+)
sgcb sgcb coding downstream 21228 38901833 ~ 38907367 (+)
LOC120564938 NA coding downstream 26981 38907586 ~ 38921011 (+)
fryl fryl coding downstream 70965 38951570 ~ 39014780 (+)
palld palld,LOC102787062 coding downstream 194692 39075297 ~ 39130840 (+)
fbxl5 fbxl5 coding downstream 322243 39202848 ~ 39211764 (+)
LOC120565661 NA non-coding upstream 8353 38855904 ~ 38858082 (+)
G101278 rasl11b non-coding upstream 18891 38845284 ~ 38847544 (+)
LOC120564886 NA non-coding upstream 314131 38534565 ~ 38552304 (+)
G101245 pdgfra non-coding upstream 351604 38514372 ~ 38514831 (+)
G101232 kit non-coding upstream 402856 38460674 ~ 38463579 (+)
LOC120565971 NA non-coding downstream 55546 38936151 ~ 38943212 (+)
G101365 NA non-coding downstream 136106 39016711 ~ 39017673 (+)
G101364 NA non-coding downstream 137775 39018380 ~ 39023580 (+)
G101427 NA non-coding downstream 297639 39178244 ~ 39178746 (+)
G101437 NA non-coding downstream 309461 39190066 ~ 39190781 (+)
G100843 NA other upstream 1376363 37463914 ~ 37490072 (+)
prrc2c NA other upstream 1908075 36932655 ~ 36958360 (+)
G100671 NA other upstream 2167566 36695437 ~ 36698869 (+)
sass6 sass6,LOC102776185 other upstream 2254689 36596041 ~ 36611746 (+)
smim24 NA other upstream 2331853 36495484 ~ 36534582 (+)
prdm5 prdm5 other downstream 442979 39323584 ~ 39361733 (+)
LOC120565708 LOC103369944,LOC100698021,LOC101482931,LOC102791229,LOC102291415,LOC102212992 other downstream 573515 39454120 ~ 39464450 (+)
reps2 reps2,LOC102792668 other downstream 680456 39561061 ~ 39592762 (+)
LOC120565298 cdkl5,LOC103356958 other downstream 813307 39693912 ~ 39740277 (+)
atp10a atp10a other downstream 1634488 40515093 ~ 40559895 (+)

Expression


Co-expression Network