prdm5 (prdm5)


Basic Information

Item Value
gene id prdm5
gene name prdm5
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 39323584 ~ 39361733 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU136677
tgtgtgcatgcgtgcgtgtgtgcatgcacatgtgtgtgtcatTACCCTGGTGTATGCCATATGTGACCAAACTGGGAAAAGCCGTATAAATGCAGCGAGTGCAACAAAGCCTTTAGCCAGAAAAGAGGACTGGACGAGCACATGAGGacccacacaggagagaaacctttccAATGTGATGTGTGTGACCTGTCGTTCAGCTTGAAGAAGATGCTGAGCAGGCACAAGCTCACACACAACCCGAACCGGCCAATGGCAGAGTGCCAGCTGTGCCATAAGAAGTTCACCAGGAACGACTACCTCAAAGTACACATGGAGAACGTCCACGGGGAGACGGAGAGCTAGAGCCAATTATGGAACCGCTGGCTGACAATGATATCTGATTCCTCAGATAAAGTTCAGTTTCCCTATAACCAGTATGGcctatacatactgtatacacagaTGGAGCGATAGCAGAAATGTTGTTATTAAAGATACACACATGTAGGATATGGAAAACATTTGGGCGAGTATTTCAGAATTGAAACACAGGCTGTacatttgtaatttgtaaagttttGTCATACTGTTTAGTAGGGCTGcccgatatgaggaaaatatgcgataatgttgttgaatatcgcgataacgatattacttgcaataaatacacaaatattaaagtgtacctagttctgcctttctgctgctttcagtattctgctaaaatacaacaaattgcttgttgaatttggAAAACCAAACGAAAAACTTttctaaaattattttattgaacgaattgaacattgaacataaAAAGCACCATTAAAAAAAGATGACAGTTAGATTTAAAGtgtagttttctactgatactcTCTTTCAACTAACTCAAAACATCTCAGTGTCTTTGGCGATGTGTCGCAGCCTTtggcgatgtgtttattgtgcaagttgatatcgcgatgatgATACAAAAACCATATATTGTGAAGCCCTACTGTTTAGGTATTGTTTGAGCTGCCTTCAGAGCCGCTGTGTCTGCTCACAGAAATGTCTGTTATTTCACTTTAAGTCTGTCGGACTTCTAACCAGTGTTACTGATCATACTGTTACAGCCTGACCTCTTCCACTGTAGCATTTACTGACCAACTGTCTGAACACATTACTGTACATCTGTGGCCAGTAGACCTTGAAGCGCACCTACCTGtacgctttctacatgtttacaCCGGTTCTTTGGCGTCCAAACATGTTTAATATTTAGACTCTGTTAAGCCCCAGAGCACACTTCAAAAGCATGTTGCTCCATttattatttcaaaataaaagtatttaaacAGAATGTTTGAACGGGAGATGGAGAGAAGTGAAGCTCTGAAAACTGTAATTCTAACCAGCTACAAAATCTGAAACAGCACACATGTAAGTTTTTATTTACATGATGGCCAGAGActataaacatacagtactgtcCTCAGTCTGTCATGCTCCTATTTCAGATCTGTTGGGGCCCTCGTTTAAAAAGCGATCAAGAAACCTTGCAGAGCAGAAGTTGCATGGCTTTTTAGGTATAATCTGGTATAACTTTAAAACGGTTGGACGTACATTATTAATTTAAGATGAATGAGTTCCTCCCTTTCCCACGGCCTTTTGGTGCTTAAAGTGTGTTACTGTTTCTGCGTCCCAAATTGTCTTAGGGACATGAAGAGAATCCaaagtactgtgtgtgttgaCTTTCTTAATGTATTGAGTATGTTTTCATATGAATGGCCCAGGGTTATTGTGCCTTTACGGTATGTGTTTAAGTTCTTTGTTCATCATTGTTCGATACAGtatttaatgtatttcaatAGAAGTGCAATTCTCTCCTGTTTTATGTCCACACCCAGTTGCTTCCTCATGTACTGCCCCTGTGATTAATGCACATTCCCGCTGTTTATTCTGCATCTGTAGACTGTGAATTGTCACTTCACACTTTTGTATTTTGAAATAT
>XM_039812443.1
GTAAAGGTAGCTTCTGGTTACAAACTTCGGACCAATCAGGACGCCGCTTTGGGTTCCTGCTGCAGGAGCAACAGAAGTTCAACCTGGACCGCTTCACGGAGAAGAAACTATCTGCTCTAAATTCAAACTGACAATGCGTATTCACTTCCGCTGACATTCCTAATAGCCAACAAATTGTCATTGAAGGAAACATTTCCGAGTAATGACAATGTTGGGTATGTATGTGCCAGACAGATTTTCTCTGAAATCGTCCAAGGTCCAGGATGGAATCGGTCTTTACACGGCGAGGCGAGTGAAAAAGggAGAAAAGTTTGGCCCTTTTGCAGGTGAGAAAAAGCTGCCTGGCGAACTGGATGAAAGCTCGGACACCAGGCTTATGTGGGAGGTCCGTGGCAGTAAAGGAGATGTGCTGTATATTCTGGATGCTAGTAACCCACGCTATGCCAACTGGCTGCGGTTTGTCCATCAGGCGCCTTCACAAGAGCAGAAGAACTTGGCAGCCATACAGGATGGAGAGAACATCTTTTACCTGGCTGTGGATGACATAGAGACTGACACAGAGCTCCTGATAGGCTACCTGGATAGTGacatggaggaagaggaggaggaagaagaggaggaggtcaTCAAAGATGACGACGAAAACAGTAAAGAAGCTAGGCATCTTGAAATGGAGCTAATAATAAAGAAGGAGGACCACCCCTGCCTGCTGTGCGAGAGCAGCTTTCCCAGTGAGGAGATCCTGGCCGCCCACCTCCAGAGTCTGCACCAGAGGCCCAGCACAGAGGAGAAGGAGTTCAAATGCAAAAACTGTGGCAAGAAGTTCCCCATCAAGCAGGCTCTGCAGCGCCATGTTTTGCATTGTTCTGAGTCACTGGATCCATCCGGCGACTCTAAAGCACACCAGTGCTCCATCTGCCACAACACATTCAGATCAATATCCAGTTTTGAACAGCATAAGGAAGCCTGCAAAGGAGATGCCAGGTTCATCTGTAAAGCAGAGAGCTGCGGCAAAAGATTCAAAAGCAAGGACGCTCTGAAGAAGCATAAAGGAAATGTTCACACAGGGAGTGCACGTCGGAAACTCACGTGCACCATATGCAACAGAAAATGCTCCTCCGCTCTGAATCTCCAAGAACACAGGAAGGTACATGAAATACTTGACTGCCACGCATGTGACAAGAAGTTCATTTCTACAAATCAGCTAAAACGTCATATgatcacacactcagAGAAGCGGCCATATACCTGTGAGATCTGCAGTCGTTCGTTCAAGCGTCTGGACCAGGTGACGGCTCATAAGATCATCCACAGCGAGGACAAACCGTACAAATGTAAGCTGTGTGGGAAAGAGTTTGCCCACCGCAACGTGTACAAGAATCACAAGAAGACCCACTCCGAGGAAAGACCCTTCCAGTGTGAGGAGTGCAAAGCTCTGTTCCGCACCCCCTTCTCTCTACAGCGTCACTTACTCATCCACAACAGTGAGAGGACATTCAAGTGTGACCATTGCGACGCCACCTTCAAGAGGAAGGACACGCTCAACGTTCACATCCAGGTGGTGCACGACGGCCATAAGAAGTATAAGTGCGACCTGTGTGAGAAGGCCTTTGTCACTCCTTCTGTCCTCAAGAGCCACAAGAAGACACACACGGGGGAGAAGGAGAAGATCTGCCCATACTGCGGACAAAAGTTTGCCAGCAACGGCACGCTAAGGGTCCACATCCGCAGCCATACAGGTGAGCGTCCATACCAGTGCCCCTACTGTGACAAAGCGTTCAGCAAGAACGATGGCCTGAAGATGCACATCCGCACACACACTCGTGAAAAGCCGTATAAATGCAGCGAGTGCAACAAAGCCTTTAGCCAGAAAAGAGGACTGGACGAGCACATGAGGacccacacaggagagaaacctttccAATGTGATGTGTGTGACCTGTCGTTCAGCTTGAAGAAGATGCTGAGCAGGCACAAGCTCACACACAACCCGAACCGGCCAATGGCAGAGTGCCAGCTGTGCCATAAGAAGTTCACCAGGAACGACTACCTCAAAGTACACATGGAGAACGTCCACGGGGAGACGGAGAGCTAGAGCCAATTATGGAACCGCTGGCTGACAATGATATCTGATTCCTCAGATAAAGTTCAGTTTCCCTATAACCAGTATGGcctatacatactgtatacacagaTGGAGCGATAGCAGAAATGTTGTTATTAAAGATACACACATGTAGGATATGGAAAACATTTGGGCGAGTATTTCAGAATTGAAACACAGGCTGTacatttgtaatttgtaaagttttGTCATACTGTTTAGTAGGGCTGcccgatatgaggaaaatatgcgataatgttgttgaatatcgcgataacgatattacttgcaataaatacacaaatattaaagtgtacctagttctgcctttctgctgctttcagtattctgctaaaatacaacaaattgcttgttgaatttggAAAACCAAACGAAAAACTTttctaaaattattttattgaacgaattgaacattgaacataaAAAGCACCATTAAAAAAAGATGACAGTTAGATTTAAAGtgtagttttctactgatactcTCTTTCAACTAACTCAAAACATCTCAGTGTCTTTGGCGATGTGTCGCAGCCTTtggcgatgtgtttattgtgcaagttgatatcgcgatgatgATACAAAAACCATATATTGTGAAGCCCTACTGTTTAGGTATTGTTTGAGCTGCCTTCAGAGCCGCTGTGTCTGCTCACAGAAATGTCTGTTATTTCACTTTAAGTCTGTCGGACTTCTAACCAGTGTTACTGATCATACTGTTACAGCCTGACCTCTTCCACTGTAGCATTTACTGACCAACTGTCTGAACACATTACTGTACATCTGTGGCCAGTAGACCTTGAAGCGCACCTACCTGtacgctttctacatgtttacaCCGGTTCTTTGGCGTCCAAACATGTTTAATATTTAGACTCTGTTAAGCCCCAGAGCACACTTCAAAAGCATGTTGCTCCATttattatttcaaaataaaagtatttaaacAGAATGTTTGAACGGGAGATGGAGAGAAGTGAAGCTCTGAAAACTGTAATTCTAACCAGCTACAAAATCTGAAACAGCACACATGTAAGTTTTTATTTACATGATGGCCAGAGActataaacatacagtactgtcCTCAGTCTGTCATGCTCCTATTTCAGATCTGTTGGGGCCCTCGTTTAAAAAGCGATCAAGAAACCTTGCAGAGCAGAAGTTGCATGGCTTTTTAGGTATAATCTGGTATAACTTTAAAACGGTTGGACGTACATTATTAATTTAAGATGAATGAGTTCCTCCCTTTCCCACGGCCTTTTGGTGCTTAAAGTGTGTTACTGTTTCTGCGTCCCAAATTGTCTTAGGGACATGAAGAGAATCCaaagtactgtgtgtgttgaCTTTCTTAATGTATTGAGTATGTTTTCATATGAATGGCCCAGGGTTATTGTGCCTTTACGGTATGTGTTTAAGTTCTTTGTTCATCATTGTTCGATACAGtatttaatgtatttcaatAGAAGTGCAATTCTCTCCTGTTTTATGTCCACACCCAGTTGCTTCCTCATGTACTGCCCCTGTGATTAATGCACATTCCCGCTGTTTATTCTGCATCTGTAGACTGTGAATTGTCACTTCACACTTTTGTATTTTGAAATATATAAAACCTCATCACCTACCAAACA
>XM_039812444.1
GACAGTAAAGGTAGCTTCTGGTTACAAACTTCGGACCAATCAGGACGCCGCTTTGGGTTCCTGCTGCAGGAGCAACAGAAGTTCAACCTGGACCGCTTCACGGAGAAGAAACTATCTGCTCTAAATTCAAACTGACAATGCGTATTCACTTCCGCTGACATTCCTAATAGCCAACAAATTGTCATTGAAGGAAACATTTCCGAGTAATGACAATGTTGGGTATGTATGTGCCAGACAGATTTTCTCTGAAATCGTCCAAGGTCCAGGATGGAATCGGTCTTTACACGGCGAGGCGAGTGAAAAAGggAGAAAAGTTTGGCCCTTTTGCAGGTGAGAAAAAGCTGCCTGGCGAACTGGATGAAAGCTCGGACACCAGGCTTATGTGGGAGGTCCGTGGCAGTAAAGGAGATGTGCTGTATATTCTGGATGCTAGTAACCCACGCTATGCCAACTGGCTGCGGTTTGTCCATCAGGCGCCTTCACAAGAGCAGAAGAACTTGGCAGCCATACAGGATGGAGAGAACATCTTTTACCTGGCTGTGGATGACATAGAGACTGACACAGAGCTCCTGATAGGCTACCTGGATAGTGacatggaggaagaggaggaggaagaagaggaggaggtcaTCAAAGATGACGACGAAAACAGTAAAGAAGCTAGGCATCTTGAAATGGAGCTAATAATAAAGAAGGAGGACCACCCCTGCCTGCTGTGCGAGAGCAGCTTTCCCAGTGAGGAGATCCTGGCCGCCCACCTCCAGAGTCTGCACCAGAGGCCCAGCACAGAGGAGAAGGAGTTCAAATGCAAAAACTGTGGCAAGAAGTTCCCCATCAAGCAGGCTCTGCAGCGCCATGTTTTGCATTGTTCTGAGTCACTGGATCCATCCGGCGACTCTAAAGCACACCAGTGCTCCATCTGCCACAACACATTCAGATCAATATCCAGTTTTGAACAGCATAAGGAAGCCTGCAAAGGAGATGCCAGGTTCATCTGTAAAGCAGAGAGCTGCGGCAAAAGATTCAAAAGCAAGGACGCTCTGAAGAAGCATAAAGGAAATGTTCACACAGGGAGTGCACGTCGGAAACTCACGTGCACCATATGCAACAGAAAATGCTCCTCCGCTCTGAATCTCCAAGAACACAGGAAGGTACATGAAATACTTGACTGCCACGCATGTGACAAGAAGTTCATTTCTACAAATCAGCTAAAACGTCATATgatcacacactcagAGAAGCGGCCATATACCTGTGAGATCTGCAGTCGTTCGTTCAAGCGTCTGGACCAGGTGACGGCTCATAAGATCATCCACAGCGAGGACAAACCGTACAAATGTAAGCTGTGTGGGAAAGAGTTTGCCCACCGCAACGTGTACAAGAATCACAAGAAGACCCACTCCGAGGAAAGACCCTTCCAGTGTGAGGAGTGCAAAGCTCTGTTCCGCACCCCCTTCTCTCTACAGCGTCACTTACTCATCCACAACAGTGAGAGGACATTCAAGTGTGACCATTGCGACGCCACCTTCAAGAGGAAGGACACGCTCAACGTTCACATCCAGGTGGTGCACGACGGCCATAAGAAGTATAAGTGCGACCTGTGTGAGAAGGCCTTTGTCACTCCTTCTGTCCTCAAGAGCCACAAGAAGACACACACGGGGGAGAAGGAGAAGATCTGCCCATACTGCGGACAAAAGTTTGCCAGCAACGGCACGCTAAGGGTCCACATCCGCAGCCATACAGGTGAGCGTCCATACCAGTGCCCCTACTGTGACAAAGCGTTCAGCAAGAACGATGGCCTGAAGATGCACATCCGCACACACACTCGTAGCACAGCGCTCTGCTGTTACCGTGTGCTGATAATGGACGTATCCTGCCCAGGTTGACGTCCCTCGGTAGAAACAGGCAGGAAAAGCCGTATAAATGCAGCGAGTGCAACAAAGCCTTTAGCCAGAAAAGAGGACTGGACGAGCACATGAGG

Function

symbol description
prdm5 Predicted to enable DNA-binding transcription factor activity and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Acts upstream of or within embryonic cranial skeleton morphogenesis; regulation of Wnt signaling pathway; and regulation of transcription, DNA-templated. Predicted to be active in nucleus. Is expressed in head; intestinal epithelium; nervous system; and pectoral fin. Human ortholog(s) of this gene implicated in brittle cornea syndrome 2. Orthologous to human PRDM5 (PR/SET domain 5).

NR:

description
PREDICTED: PR domain zinc finger protein 5 isoform X3

GO: NA

KEGG:

id description
K22534 PRDM5; PR domain zinc finger protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
TU136677 False 1975 lncRNA 0.40 3 39356483 39361708
XM_039812443.1 True 3750 mRNA 0.44 16 39323588 39361733
XM_039812444.1 False 1981 mRNA 0.50 16 39323584 39356737

Neighbor

gene id symbol gene type direction distance location
ndnf ndnf coding upstream 17346 39295336 ~ 39306238 (+)
fbxl5 fbxl5 coding upstream 111820 39202848 ~ 39211764 (+)
palld palld,LOC102787062 coding upstream 192744 39075297 ~ 39130840 (+)
fryl fryl coding upstream 308804 38951570 ~ 39014780 (+)
LOC120564938 NA coding upstream 402573 38907586 ~ 38921011 (+)
slc34a2b LOC106512275,LOC107396065,LOC108240151 coding downstream 117120 39478853 ~ 39487478 (+)
LOC120564940 LOC106537324 coding downstream 150977 39512710 ~ 39513658 (+)
LOC120564941 LOC100699266,LOC102791790,LOC102212335,LOC102290083,LOC101480793 coding downstream 155140 39516873 ~ 39544466 (+)
nhsa LOC103369891 coding downstream 235971 39597704 ~ 39661492 (+)
LOC120566071 rai2 coding downstream 303488 39665221 ~ 39675560 (+)
G101464 NA non-coding upstream 44631 39278652 ~ 39278953 (+)
G101437 NA non-coding upstream 132803 39190066 ~ 39190781 (+)
G101427 NA non-coding upstream 144838 39178244 ~ 39178746 (+)
G101364 NA non-coding upstream 300004 39018380 ~ 39023580 (+)
G101365 NA non-coding upstream 305911 39016711 ~ 39017673 (+)
G101484 NA non-coding downstream 75921 39437654 ~ 39438065 (+)
G101519 LOC103356959,LOC104928288 non-coding downstream 318345 39680078 ~ 39680526 (+)
G101579 NA non-coding downstream 509923 39871656 ~ 39872173 (+)
G101600 NA non-coding downstream 543303 39905036 ~ 39908510 (+)
G101666 NA non-coding downstream 622737 39984470 ~ 40018693 (+)
usp46 usp46 other upstream 442979 38866435 ~ 38880605 (+)
G100843 NA other upstream 1833512 37463914 ~ 37490072 (+)
prrc2c NA other upstream 2365224 36932655 ~ 36958360 (+)
G100671 NA other upstream 2624715 36695437 ~ 36698869 (+)
sass6 sass6,LOC102776185 other upstream 2711838 36596041 ~ 36611746 (+)
LOC120565708 LOC103369944,LOC100698021,LOC101482931,LOC102791229,LOC102291415,LOC102212992 other downstream 92387 39454120 ~ 39464450 (+)
reps2 reps2,LOC102792668 other downstream 199328 39561061 ~ 39592762 (+)
LOC120565298 cdkl5,LOC103356958 other downstream 332179 39693912 ~ 39740277 (+)
atp10a atp10a other downstream 1153360 40515093 ~ 40559895 (+)
G102165 NA other downstream 2090941 41452674 ~ 41453306 (+)

Expression


Co-expression Network