Gene
RNA
| Item | Value |
|---|---|
| gene id | G101674 |
| gene name | rp2 |
| gene type | non-coding |
| species | eurasian perch (Perca fluviatilis) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_053120.1 |
| NCBI id | CM020917.1 |
| chromosome length | 41568296 |
| location | 40000905 ~ 40003839 (+) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| symbol | description |
|---|---|
| rp2 | Predicted to enable GTPase activator activity. Acts upstream of or within animal organ development; photoreceptor cell maintenance; and photoreceptor cell outer segment organization. Predicted to be located in cell projection and plasma membrane. Predicted to be active in cilium and periciliary membrane compartment. Is expressed in several structures, including fertilized egg; liver and biliary system; pleuroperitoneal region; sensory system; and trunk. Used to study retinitis pigmentosa 2. Human ortholog(s) of this gene implicated in retinitis pigmentosa and retinitis pigmentosa 2. Orthologous to human RP2 (RP2 activator of ARL3 GTPase). |
| description |
|---|
| PREDICTED: protein XRP2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU136964 | True | 952 | lncRNA | 0.49 | 2 | 40000905 | 40003839 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| gtpbp6 | gtpbp6,LOC103356937,LOC102777366 | coding | upstream | 37369 | 39959058 ~ 39963536 (+) |
| nit2 | nit2 | coding | upstream | 46651 | 39945687 ~ 39954254 (+) |
| tbc1d23 | tbc1d23 | coding | upstream | 61498 | 39923558 ~ 39939407 (+) |
| tomm70a | tomm70 | coding | upstream | 80115 | 39911630 ~ 39920790 (+) |
| wwc3 | wwc3 | coding | upstream | 137644 | 39828956 ~ 39863261 (+) |
| slc9a7 | NA | coding | downstream | 2408 | 40006247 ~ 40036320 (+) |
| tubgcp5 | tubgcp5 | coding | downstream | 48478 | 40052317 ~ 40069649 (+) |
| cyfip1 | cyfip1 | coding | downstream | 68203 | 40072042 ~ 40125946 (+) |
| herc2 | LOC103356925 | coding | downstream | 135594 | 40139433 ~ 40197238 (+) |
| oca2 | oca2 | coding | downstream | 202187 | 40206026 ~ 40260251 (+) |
| G101600 | NA | non-coding | upstream | 92395 | 39905036 ~ 39908510 (+) |
| G101579 | NA | non-coding | upstream | 128732 | 39871656 ~ 39872173 (+) |
| G101519 | LOC103356959,LOC104928288 | non-coding | upstream | 320379 | 39680078 ~ 39680526 (+) |
| G101484 | NA | non-coding | upstream | 562840 | 39437654 ~ 39438065 (+) |
| G101464 | NA | non-coding | upstream | 721952 | 39278652 ~ 39278953 (+) |
| LOC120565265 | NA | non-coding | downstream | 40343 | 40044182 ~ 40045506 (+) |
| G101687 | nipa1,LOC102781059 | non-coding | downstream | 125962 | 40129801 ~ 40133354 (+) |
| G101688 | NA | non-coding | downstream | 131368 | 40135207 ~ 40135500 (+) |
| G101796 | NA | non-coding | downstream | 256524 | 40260363 ~ 40260609 (+) |
| G101823 | NA | non-coding | downstream | 482952 | 40486791 ~ 40487021 (+) |
| LOC120565298 | cdkl5,LOC103356958 | other | upstream | 260628 | 39693912 ~ 39740277 (+) |
| reps2 | reps2,LOC102792668 | other | upstream | 408143 | 39561061 ~ 39592762 (+) |
| LOC120565708 | LOC103369944,LOC100698021,LOC101482931,LOC102791229,LOC102291415,LOC102212992 | other | upstream | 536455 | 39454120 ~ 39464450 (+) |
| prdm5 | prdm5 | other | upstream | 639172 | 39323584 ~ 39361733 (+) |
| usp46 | usp46 | other | upstream | 1120300 | 38866435 ~ 38880605 (+) |
| atp10a | atp10a | other | downstream | 511254 | 40515093 ~ 40559895 (+) |
| G102165 | NA | other | downstream | 1448835 | 41452674 ~ 41453306 (+) |
