Gene
RNA
| Item | Value |
|---|---|
| gene id | G101687 |
| gene name | nipa1,LOC102781059 |
| gene type | non-coding |
| species | eurasian perch (Perca fluviatilis) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_053120.1 |
| NCBI id | CM020917.1 |
| chromosome length | 41568296 |
| location | 40129801 ~ 40133354 (+) |
| genome version | GENO_Pfluv_1.0_2020_eurasian_perch_Genome |
| symbol | description |
|---|---|
| nipa1 | Predicted to enable magnesium ion transmembrane transporter activity. Acts upstream of or within axon guidance. Predicted to be integral component of membrane. Predicted to be active in membrane. Human ortholog(s) of this gene implicated in hereditary spastic paraplegia 6. Orthologous to human NIPA1 (NIPA magnesium transporter 1). |
| description |
|---|
| PREDICTED: magnesium transporter NIPA1 isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU136979 | True | 1303 | lncRNA | 0.45 | 2 | 40129801 | 40133354 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| cyfip1 | cyfip1 | coding | upstream | 3855 | 40072042 ~ 40125946 (+) |
| tubgcp5 | tubgcp5 | coding | upstream | 60152 | 40052317 ~ 40069649 (+) |
| slc9a7 | NA | coding | upstream | 93481 | 40006247 ~ 40036320 (+) |
| gtpbp6 | gtpbp6,LOC103356937,LOC102777366 | coding | upstream | 166265 | 39959058 ~ 39963536 (+) |
| nit2 | nit2 | coding | upstream | 175547 | 39945687 ~ 39954254 (+) |
| herc2 | LOC103356925 | coding | downstream | 6079 | 40139433 ~ 40197238 (+) |
| oca2 | oca2 | coding | downstream | 72672 | 40206026 ~ 40260251 (+) |
| gabrb3 | gabrb3,LOC106914751,LOC103365202 | coding | downstream | 284639 | 40417993 ~ 40486609 (+) |
| ube3a | ube3a,LOC103365788 | coding | downstream | 434593 | 40567947 ~ 40582064 (+) |
| tmem131 | NA | coding | downstream | 470180 | 40603534 ~ 40637684 (+) |
| LOC120565265 | NA | non-coding | upstream | 84295 | 40044182 ~ 40045506 (+) |
| G101666 | NA | non-coding | upstream | 111108 | 39984470 ~ 40018693 (+) |
| G101674 | rp2 | non-coding | upstream | 125962 | 40000905 ~ 40003839 (+) |
| G101600 | NA | non-coding | upstream | 221291 | 39905036 ~ 39908510 (+) |
| G101579 | NA | non-coding | upstream | 257628 | 39871656 ~ 39872173 (+) |
| G101688 | NA | non-coding | downstream | 1853 | 40135207 ~ 40135500 (+) |
| G101796 | NA | non-coding | downstream | 127009 | 40260363 ~ 40260609 (+) |
| G101823 | NA | non-coding | downstream | 353437 | 40486791 ~ 40487021 (+) |
| G101831 | NA | non-coding | downstream | 374146 | 40507500 ~ 40507759 (+) |
| G101832 | NA | non-coding | downstream | 375537 | 40508891 ~ 40509367 (+) |
| LOC120565298 | cdkl5,LOC103356958 | other | upstream | 389524 | 39693912 ~ 39740277 (+) |
| reps2 | reps2,LOC102792668 | other | upstream | 537039 | 39561061 ~ 39592762 (+) |
| LOC120565708 | LOC103369944,LOC100698021,LOC101482931,LOC102791229,LOC102291415,LOC102212992 | other | upstream | 665351 | 39454120 ~ 39464450 (+) |
| prdm5 | prdm5 | other | upstream | 768068 | 39323584 ~ 39361733 (+) |
| usp46 | usp46 | other | upstream | 1249196 | 38866435 ~ 38880605 (+) |
| atp10a | atp10a | other | downstream | 381739 | 40515093 ~ 40559895 (+) |
| G102165 | NA | other | downstream | 1319320 | 41452674 ~ 41453306 (+) |
