XLOC_004684 (si:dkey-220f10.4)


Basic Information

Item Value
gene id XLOC_004684
gene name si:dkey-220f10.4
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 20618336 ~ 20625630 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00009276
TCGCAGGTGGGGATGTCAGATGGAGCCACTGAGACAAACGGAGAAACAGTGCCTTttatttgatagcttgatttGAGCATGTATTCTGAACGCTAAAGAAATGGAAGATGCAGAGGTTCGACAACAGAAGCTGGACAATCAGCGTTCACTTTTAATCAAGAAACAACAAAGACGAAGGGCAGATGCCCGGATGGTTACAGCGAATCCTGACATCTGTTCCAAGACACGCAAACAGAAACCTGAGTGTGACGATACTGTTTTATTGATAAGCCAATCTCAAAGCAATACTTCCCTCAATGACACACAACCTGAGCATATTTATGAAAACACAGTGGAGGAGATTTGTTTGGGAGAACTGAGTGTTTCATCCAGGACAGAAGAGGCATCAGAGGAAATTGCTCAGACTGTCCCGGTCATCATTAAGAAAATCGATCTAGAGATCAGCCCGAAGCACAGCACTACAAGCACTTTAGACACAGACGGCCAGGcagatgaaaagaaaacaaagaagAAGGGTGTGAAAAAGGGACAAACTAAACTACTTGAACCAAAAGCTGCACTGGAGGTGgaggaaaatgaaaagaaagagaAGAAATCTGTGAAGAAGAAGGAAAAGACAAATGGAACTAAAGGGAGAGCAAAGACAGGGGAACAGTCCTCAGTTCAGACTGATTCAGTTGTGGATTTCTCCATTAATGAAGAGAAAAAACCTGAATCAGAGAGTGAAGATGAAGGAAAAGACTGGTCAAAGAGCCCTGTTCCTCCTACaccaaagaaaaaacaaatgaagCCAATGAGATGTCATCTCAGTGACAGTGAAGAAGAAAACGATGAGAAAGAGGAGAAGGACAAGAAGAAGGAAgctaaaaaaacaccaaaaaagtctaaaaaaaacacaaaaagtgtTAACAGTCTTGCCTCTTTGAACTCCAACTATAAGGAGCACTCTTCTGACAGTGATTCTTCCGACATCGGAAAATCGTCTCCCATGTCTTTGGAGGATCTGGAACAGTTTGCCATGCGTCCTGCTCCAAGAGACGTGACCATTCAGTGCAGGATCACCAGAGACAGGAGAGGAGTGGAGAAAGGGATCTACCCCACTTATTACCTCCACATGGAGAAAGAGGATGGGAAACGGGTCTTTCTGATGGCTGGCAGGAAAAGAAAAAAGTGCAAAACGTCCAATTATTTGATATCAGTTGATCCTACAGATTTATCCAGAGATACTGACAGCTACATTGGAAAATTAAGgtCAAATGTCTTGGGGACTAAGTTCACTGTGTTTGATAATGGTGAGAATCCTGAAAGGAAACCATTTATTAAAGAAATGGATACACTGCGACAAGAGCTAGCAGCAATATTTTATGAAAAAAATGTTCTGGGTTTCAAAGGTCCCCGCAAAATGACAGTAATTATTCCTGGTATGCACGAAAATGATGAGAGAGTCGTTATTCGACCAAAAAGCGAGCTGGAGTCTCTGCTCACCCGATACGAGAACGGTAATAAAGAGAATCTTGTCACTCTAGTCAATAAATCACCCAGCTGGAATGAGCAAACTCAGTCGTATGTGCTTAATTTTCATGGCCGAGTTACTCAGGCATCTGTCAAAAACTTTCAGATTGTCCATCCAGATAATGTGGACTACATTGTAATGCAGTTTGGCCGGGTTGCAGACGATGTGTTTTCCATGGACTACAGCTTTCCCATGTGTGCTCTACAGGCATTTGCTATCACACTGTCCTCATTTGATGGCAAACTAGCATGTGAATAA
>TCONS_00009277
ATGGAAGATGCAGAGGTTCGACAACAGAAGCTGGACAATCAGCGTTCACTTTTAATCAAGAAACAACAAAGACGAAGGGCAGATGCCCGGATGGTTACAGCGAATCCTGACATCTGTTCCAAGACACGCAAACAGAAACCTGAGTGTGACGATACTGTTTTATTGATAAGCCAATCTCAAAGCAATACTTCCCTCAATGACACACAACCTGAGCATATTTATGAAAACACAGTGGAGGAGATTTGTTTGGGAGAACTGAGTGTTTCATCCAGGACAGAAGAGGCATCAGAGGAAATTGCTCAGACTGTCCCGGTCATCATTAAGAAAATCGATCTAGAGATCAGCCCGAAGCACAGCACTACAAGCACTTTAGACACAGACGGCCAGGcagatgaaaagaaaacaaagaagAAGGGTGTGAAAAAGGGACAAACTAAACTACTTGAACCAAAAGCTGCACTGGAGGTGgaggaaaatgaaaagaaagagaAGAAATCTGTGAAGAAGAAGGAAAAGACAAATGGAACTAAAGGGAGAGCAAAGACAGGGGAACAGTCCTCAGTTCAGACTGATTCAGTTGTGGATTTCTCCATTAATGAAGAGAAAAAACCTGAATCAGAGAGTGAAGATGAAGGAAAAGACTGGTCAAAGAGCCCTGTTCCTCCTACaccaaagaaaaaacaaatgaagCCAATGAGATGTCATCTCAGTGACAGTGAAGAAGAAAACGATGAGAAAGAGGAGAAGGACAAGAAGAAGGAAgctaaaaaaacaccaaaaaagtctaaaaaaaacacaaaaagtgtTAACAGTCTTGCCTCTTTGAACTCCAACTATAAGGAGCACTCTTCTGACAGTGATTCTTCCGACATCGGAAAATCGTCTCCCATGTCTTTGGAGGATCTGGAACAGTTTGCCATGCGTCCTGCTCCAAGAGACGTGACCATTCAGTGCAGGATCACCAGAGACAGGAGAGGAGTGGAGAAAGGGATCTACCCCACTTATTACCTCCACATGGAGAAAGAGGATGGGAAACGGGTCTTTCTGATGGCTGGCAGGAAAAGAAAAAAGTGCAAAACGTCCAATTATTTGATATCAGTTGATCCTACAGATTTATCCAGAGATACTGACAGCTACATTGGAAAATTAAGgtCAAATGTCTTGGGGACTAAGTTCACTGTGTTTGATAATGGTGAGAATCCTGAAAGGAAACCATTTATTAAAGAAATGGATACACTGCGACAAGAGCTAGCAGCAATATTTTATGAAAAAAATGTTCTGGGTTTCAAAGGTCCCCGCAAAATGACAGTAATTATTCCTGGTATGCACGAAAATGATGAGAGAGTCGTTATTCGACCAAAAAGCGAGCTGGAGTCTCTGCTCACCCGATACGAGAACGGTAATAAAGAGAATCTTGTCACTCTAGTCAATAAATCACCCAGCTGGAATGAGCAAACTCAGTCGTATGTGCTTAATTTTCATGGCCGAGTTACTCAGGCATCTGTCAAAAACTTTCAGATTGTCCATCCAGATAATGTGGACTACATTGTAATGCAGTTTGGCCGGGTTGCAGACGATGTGTTTTCCATGGACTACAGCTTTCCCATGTGTGCTCTACAGGCATTTGCTATCACACTGTCCTCATTTGATGGCAAACTAGCATGTGAATAA
>TCONS_00009278
cttttTTAATATCAGACACACAACCTGAGCATATTTATGAAAACACAGTGGAGGAGATTTGTTTGGGAGAACTGAGTGTTTCATCCAGGACAGAAGAGGCATCAGAGGAAATTGCTCAGACTGTCCCGGTCATCATTAAGAAAATCGATCTAGAGATCAGCCCGAAGCACAGCACTACAAGCACTTTAGACACAGACGGCCAGGcagatgaaaagaaaacaaagaagAAGGGTGTGAAAAAGGGACAAACTAAACTACTTGAACCAAAAGCTGCACTGGAGGTGgaggaaaatgaaaagaaagagaAGAAATCTGTGAAGAAGAAGGAAAAGACAAATGGAACTAAAGGGAGAGCAAAGACAGGGGAACAGTCCTCAGTTCAGACTGATTCAGTTGTGGATTTCTCCATTAATGAAGAGAAAAAACCTGAATCAGAGAGTGAAGATGAAGGAAAAGACTGGTCAAAGAGCCCTGTTCCTCCTACaccaaagaaaaaacaaatgaagCCAAGTAAAcgaaaaaaaagtaactttttgTTAACGATAGTGGCCTGATTGGTAAAATGCTATTTCTGTCATTGCAGTGAGATGTCATCTCAGTGACAGTGAAGAAGAAAACGATGAGAAAGAGGAGAAGGACAAGAAGAAGGAAgctaaaaaaacaccaaaaaagtctaaaaaaaac

Function

symbol description
si:dkey-220f10.4 Predicted to be involved in protein localization to cilium. Predicted to be active in cilium. Is expressed in epiphysis; retina; and retinal photoreceptor layer. Orthologous to human TULP2 (TUB like protein 2).

GO:

id name namespace
GO:0061512 protein localization to cilium biological_process
GO:0005929 cilium cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-9651 Predicted to be involved in protein localization to cilium. Predicted to be active in cilium. Is expressed in epiphysis; retina; and retinal photoreceptor layer. Orthologous to human TULP2 (TUB like protein 2).

Ensembl:

ensembl_id ENSDARG00000062902

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00009276 False 1771 mRNA 0.42 13 20618336 20625630
TCONS_00009277 False 1671 mRNA 0.42 12 20618522 20625630
TCONS_00009278 True 684 lncRNA 0.40 3 20620199 20621100

Neighbor

gene id symbol gene type direction distance location
XLOC_004683 arsg coding upstream 17958 20583552 ~ 20600378 (+)
XLOC_004682 AMZ2 coding upstream 42955 20567382 ~ 20575381 (+)
XLOC_004681 gna13a coding upstream 53658 20552190 ~ 20564678 (+)
XLOC_004680 si:zfos-754c12.2 coding upstream 109977 20506197 ~ 20508359 (+)
XLOC_004679 NA coding upstream 113535 20491619 ~ 20504801 (+)
XLOC_004685 stx4 coding downstream 1534 20627164 ~ 20652923 (+)
XLOC_004686 mxra7 coding downstream 41671 20667301 ~ 20677982 (+)
XLOC_004687 st6galnac1.1 coding downstream 52557 20678187 ~ 20685624 (+)
XLOC_004688 st6galnac1.2 coding downstream 65680 20691310 ~ 20785149 (+)
XLOC_004689 NA coding downstream 181267 20806897 ~ 21106987 (+)
XLOC_004675 NA non-coding upstream 352871 20263585 ~ 20265465 (+)
XLOC_004670 NA non-coding upstream 1159051 19458809 ~ 19459285 (+)
XLOC_004667 BX649366.2 non-coding upstream 1230063 19388143 ~ 19388273 (+)
XLOC_004660 NA non-coding upstream 1347180 19267759 ~ 19271156 (+)
XLOC_004691 FO704814.1 non-coding downstream 811716 21437346 ~ 21437458 (+)
XLOC_004694 NA non-coding downstream 1132187 21757817 ~ 21799396 (+)
XLOC_004695 NA non-coding downstream 1392316 22017946 ~ 22019770 (+)
XLOC_004696 NA non-coding downstream 1633332 22258962 ~ 22304841 (+)

Expression


Co-expression Network