LOC120564862 (LOC104939946,LOC103370860,LOC101073928,LOC105932471,LOC103155165)


Basic Information

Item Value
gene id LOC120564862
gene name LOC104939946,LOC103370860,LOC101073928,LOC105932471,LOC103155165
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 28085890 ~ 28090584 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039810097.1
AAACTCACGTGCTCGTTCTCTTCCTTGAAGGCGGTGTCTTCTAGCTGCCGGTGAGGAGGAGTGTTGTTGTTTGTGGGGAAAGTACTTAAAAAGTGCAAAAACTAGTCTTCTACAATGGGAACCCGAGATGACGAATACGACTATTTGTTCAAAGTCGTACTAATCGGAGACTCTGGCGTGGGGAAGAGTAACCTGCTGTCCCGCTTCACAAGAAATGAGTTCAACCTGGAGAGCAAGAGCACCATTGGGGTGGAGTTTGCCACCCGCAGCATCCAGGTGGACGGCAAGACGATAAAGGCTCAAATTTGGGACACAGCTGGACAGGAACGCTACAGAGCAATCACCTCAGCGTACTACCGGGGTGCAGTTGGAGCTCTCCTGGTTTACGACATCGCCAAGCACCTGACATACGAAAATGTCGAGCGCTGGCTGAAGGAGCTGAGGGACCACGCTGACAACAACATCGTCATCATGCAGGTCGGAAACAAGAGCGACCTGCGCCACCTCAGGGCAGTGCCCACTGATGAGGCCCGAGCCTTCGCAGAAAAGAACGCTATCTCATTCATTGAAACCTCCGCCTTGGACTCCACTAATGTGGAAGAAGCCTTTAAGAGCATTCTCACAGaaatctACCGTATTGTATCTCAGAAGCAAATATCGGACAGATCTGGAAATGATGAGTCTCCAGGCAACAATGTAGTGGACATAAGCCTCCCCCCAACCACAGACGGGCAGAGGGGCAACAAACTCCCTTGCTGCCAAAGCCTGTGACGCTCTTATCTTCTTTTCCTGTCCGACTCTCTGTCGGTCTTTCCTCTCTTCATCTCTGGTTTACTTCAGATGTCATACTGCTGTCATCAGAATACCCTCACGGGTATTTGACATTCCTTTTTTGCTGGTTTCTTCTTGTTTGTTTGGATTCAGAAGATCCTGTCTGCAATCATTTACAGCCTCATAATAACctggagaaggagagagtgTAAAGCTCTTATGATGTTGATCTTGAAGCTAACTTCTTTTTAATTAACTAGCCTTTATGGTCCTATTGACCTGCTCCTGTAGAAGGAGTGGTGAGGGATCAGTAGACCTGTGTATCACTGCTTCCTTCCTGTTCTCGGCTTTCAGTGATACAGACTTTTGCCACGATCTGCTACAGTGGAATCCCAATTTGATGTCTGGTTGACCTGATTCTGCCTATCATGCAATACGGGTGTAGAAGAGGAGACGCTAAGGCGGTACCACTGGAGTATTGATGTGTACTCTGTCTGGAGTTTCTATTTGCCTCTTTTAGTTTTCCTCTTTGAGCCATGTGCCCACCGTGGCATTATATTAGCATGAGCACAGGGAACAGACTGGCTGTGACTGTCTGACTTAATGTGGGCAAGTGTGAAacaaatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctcaaagaTACCAAAGGAGATGGATGCAATCGTTATCTGTTTTGGGTTTTCTCATTTAAGTGTGTTCAAAGCTGCTGAGGTTGCATTTCATTGCTGTATTTGGTGAACCAATCCAGGCTATTTTCAAAACAATGTCTAATGCTAAATAGCAAAAAGTAATGTTATAAATTGTGGTgtatgatttattattattgatattgtgtAATAGTATCAGCCTGGATCAAGCCTTGTGTTCCTCACTTTTAAACAGGCTatctcaaaatgaaaatgtcttttgcACTTATTGCCAATCATTTCAGTGGAACAAATCaccatatatttttaaaatacacTCAACATCTTTATCGGGTAACATTTTCCTGTTGGttgtaaagaaaaagaaaaatgcactacatgtggtgtttttttttttttttttttgtgtacagCATTTTCCCCTCATGCACTCACCCTTTGCTGTCATATTAATGTTATCTGTTAAAGGGAAATGGATAAAGatgtaatctgaaaacatttacatggAAAATGAACTAAAAATGTAACACTTACACTCCAGCTAGTTAAGAAAATGGAACTGAAAATCAGAAATGCAAATTGTTAATATGGTTGGCTGAAATGCCTCTCTTTTCACTCATCTGCGAGAAATGCTTTCAGGTGTGATTGTTTCGATACATTGGTGCgtgatatttaacattttttcaaaaatgtcaaGGTGGCAAATGTTAACTTGTTTTGCTACTGTTCGCATTACACAGAAAATACTGAAGCTTAAATAAACCGAATCCACATGAACATATAGGagacagacttctttttggataCATTACTCACTCAGTGTACCCATAACTTTATGCTGTGTTCACCACTATTGTTTAGCAACTTAGGCATCACCTACCTTTGAAAATCTACACATATGAGGGCTAGGTGCTCAAAGTTTTAGTAGTAGTTTTACAGCATCTAATCGGCAGGCTCCCTAAAATATTGCATATTTGGTTTTAGAATTCTTCATCCTTATTCAAACAAATATTGTCAATGTGAATGCATTTTAGCACTACATAAAAGAAAtatgtaaaatgtttaaaaaaaaaaaaaaaattctaaattgcTTGTTCAATCCAACGTGGTTGGCATGTCTGAAAAGGGTTAATTAAGTAGCTCTCCATAATTAAGAAATAATATTCACTATGCAGTTGTAAAACCTGCTATTTCCaggaatgtaaaataaaatgtggaaaGAAATGAG

Function

NR:

description
PREDICTED: ras-related protein Rab-11B

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07905 RAB11B; Ras-related protein Rab-11B

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039810097.1 True 2772 mRNA 0.41 5 28085890 28090584

Neighbor

gene id symbol gene type direction distance location
gpx4a gpx4 coding upstream 58652 28021945 ~ 28027238 (+)
arhgap45b arhgap45 coding upstream 68202 28000091 ~ 28017688 (+)
tjp3 tjp3 coding upstream 88476 27972793 ~ 27997414 (+)
si:ch73-63e15.2 sbno2 coding upstream 114435 27894716 ~ 27971455 (+)
rfxank rfxank coding upstream 470423 27612852 ~ 27615467 (+)
march2 march2 coding downstream 121 28090705 ~ 28098805 (+)
LOC120564863 NA coding downstream 21001 28111585 ~ 28127231 (+)
si:ch211-129c21.1 LOC103369187 coding downstream 56069 28146653 ~ 28169655 (+)
chaf1a chaf1a coding downstream 88884 28179468 ~ 28192130 (+)
uap1 uap1 coding downstream 114908 28205492 ~ 28218081 (+)
G98770 LOC104966597,LOC101073477 non-coding upstream 203579 27879317 ~ 27882311 (+)
G98766 hapln4 non-coding upstream 226767 27855676 ~ 27859123 (+)
G98763 NA non-coding upstream 236952 27848733 ~ 27848938 (+)
G98723 NA non-coding upstream 498782 27586425 ~ 27587108 (+)
G98685 NA non-coding upstream 587003 27498223 ~ 27498887 (+)
G98972 NA non-coding downstream 222010 28312594 ~ 28318888 (+)
LOC120565132 NA non-coding downstream 358959 28449543 ~ 28460210 (+)
G99007 hook1,LOC102781169,LOC106584290 non-coding downstream 479064 28569648 ~ 28570858 (+)
G99108 NA non-coding downstream 597298 28687882 ~ 28688118 (+)
G99189 NA non-coding downstream 879903 28970487 ~ 28972086 (+)
pip5k1ca pip5k1c,LOC106917759,LOC106949671,LOC107393349,LOC103370870 other upstream 1503 28027964 ~ 28084387 (+)
ncanb ncan,LOC104966594,LOC107554802 other upstream 253035 27659696 ~ 27832855 (+)
si:ch211-212d10.2 LOC103371119,LOC104950605,LOC100693321,LOC101487565,LOC102778050 other upstream 708836 27372809 ~ 27377054 (+)
micos13 LOC104918748,LOC103371279,LOC104964520,LOC106536194 other upstream 1289603 26791729 ~ 26796287 (+)
LOC120565098 NA other upstream 1743597 26339543 ~ 26342293 (+)
LOC120564865 NA other downstream 46685 28137269 ~ 28146325 (+)
LOC120565530 LOC100702602,LOC101154857,LOC107096371,LOC105928898,LOC101076602,LOC108230771 other downstream 681778 28772362 ~ 28774553 (+)
ralgps2 ralgps2 other downstream 684791 28775375 ~ 28865487 (+)
G99297 NA other downstream 1573049 29663633 ~ 29665090 (+)
si:ch73-389b16.1 ccdc18 other downstream 2336919 30427503 ~ 30429291 (+)

Expression


Co-expression Network