scfd2 (scfd2)


Basic Information

Item Value
gene id scfd2
gene name scfd2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 38719919 ~ 38842671 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039810140.1
TTATGCTGCGACGGGTGATTGCCACGTCACCTTCAAGAGACTCTTGTGTTTTGTTCTGGAGCTACTTTAGCTGAAATTTCTGATGAGTCTTTAATTTCATAGCTTTTAGCAGACACTGACAATTGGCAAAATGCTGACGACGGAGAGTTTTACGCACTTTCCGGTTCAGATGTGGGAAAAGGTGCTGTCGAAGGTAAAGAAAGCGGTTGTTTTTATGGATGACAAGTGTGCAGAAGCTCTCCACTGGTGCGGAGGTGCCGCCGTCCTGCTGGAGGCTGGAGCCAGGAACTTGAAGGAGTTTTCGAGCTTCGAAGCCTGCGCTGTGAACGAACCGAAAGCCGTATTCGTGGTGAGCACTTTGTTGAAGGGCAGAACAGTGGACGTCATTAAAGACATCATATCCCTCAGCCACTTCCAGTACTGTGTCGTCTTCACCACCGTCGCTCACTCCGTGCACCTGCTCGCCAACAATGTCACCACAGAAATGGAAGGGAGCCCCGTGTTCGAGCAGTTCGAAGAGAAGCTGTGCGAGTGGATGGGGAACATGAACTACACGGCTGAAGTCTTGCATGTCCCAGTGGTCTTCGCCCCCGTGTCCCAGCAGCTTCTCCTCACACCCGCTTTTGCACACCTGTTTCCCCTGCTGTCACCTGACCTGGAGTCCCTAAATGCAAAACGTCCAGAGAAGAAGCGATTTGGAAGCCTGGTGGACGTAGACGTGCACTCTCTCCCTGTTGGACTGCAGCTTGAAATCAAATCCTTGGCTTCGGCATTAAATTCCCTGTTTGAAGCTACAGGCACCAGGGAAGAGAGTTTTGCTGTGGGTCCCATGAGCCGCATCATAGCAGGGGAACTGGCCAATCACCCTCAAGCGAAAAACAGAAGGAAGATAGCCCCGAATAAAGCATCCATCATTTTTGTGGACCGAACAATGGATCTTACAGGAGCTGTTGGTCACCATGGCGACAACCTGGTGGAGAAGATTCTGACTGTGCTCAAACATTTACCTGGCCATGTGACGGACGTACAAGTGGACATGCTGGAACTCACAAGTGTGCAGCGAACCCCCCACTCCCAGAGCACCCTGGCCCCCGGCTGTCTCGCACAGACCCAGTCACCTGCAGCCCAGTCTCTGTGGGAGGCCATGCTGACCAATAAACATAAAGAGGGGGTGATAGAGGTCCGTCGGCAACTAGTGGAAACAGCCAGTAAGGAGAAACTGCCAATCAAGATGAGCATGGGCCGCGTGACCCCAGAGCAGCTGTGCTCCTACATGCAGCTGTTCCGGAGCAGTTGGGGGGCGCTAGAGAGTCACTGCGGGGTGCTCCAGCTGGGCCTGGCCACGGCCCAGACACTCGGCCACCCCAGCCTGCCCCGCTGGGATGCCTGCCTGGCCTTCGagaggctgctgctgcagGCTCTTGGAGACTCTGATTTCCCCGTTGTGCTGAGGCAGCTGCTGCCCTTGATGAAGCCCCGCGGAGGCGAGGACAGCACCCTGGGGTGGAGGTCCAGGGAGGATGAATGCGGACCTGATGAGCTGATCCTCCTGCTGGTGTACCTGTACTCCCTGGCTGACGAGGCGCAGCCCGCAGACCAGGATACCCAGGGCACGctggagaagctggagagggaGCTGATCGGAGCGCTCACCCTGGTCATCACCCGAGAGACAGAACTCAGCCCCTTGCTCCAGAAACTCACCGGTTGTGCGAACCCAGAGGAGCTGACCACAGAGCGAGCCCATGCCACGGTGGAGGGGATGTTCAAGACCCTCCGAGGTTTGAGCCACACCAGAGACCACCTCAAGCAGCTGCGCTCGGTCTACACCCCCAGCGATGGAGTTCACCAGGCGACCTATCGTCCTTTCCTGCGGCAGATCCTGGAGGAAGTCTTCCACCCTGAAAGACTTGAATGTCCCGACATCGAGCACATGTCTGGAGGCCTCACGGACCTGCTCAAGACCGGCTTCAGCATGTTCATGAAGGTGAGTCGTCCACATCCCAGCGACAaccctctgctcttcctcttcctggTTGGTGGAGTCACGCCCTCTGAGCTGCGGCTCATCAAAGAGATCGTTAGCACGGACAAACCCGGGACTCAGGTGATGGTTTTGTCCACCAGATTACTGAGGCCCACGGATATTCCCCAGCTGCTCTTCACCACCCAAAGACTGCTGCCTGATATCGGTATCTGAAGGGCCGTCACGTGGAaaacgcacgcatgcacacgacAAGTGGGAGGACACGTGTGCCGCAGACGCCTTAACACCTCACCAGGTGTGAATCAAGCTTCAGTTAATGAGAATCTCTGGCAAAAGCTGCGAGCGGAAGTCAAGGAAACCAAATGAAGCAACATTCCTCTCCTGTTTATGTCTGTTTTGTccgaattaattaaaaagtaaacTGTAAATTAATTATATGAAAGTA

Function

symbol description
scfd2 Predicted to enable syntaxin binding activity. Predicted to be involved in intracellular protein transport and vesicle docking involved in exocytosis. Predicted to be active in plasma membrane and secretory granule. Orthologous to human SCFD2 (sec1 family domain containing 2).

NR:

description
PREDICTED: sec1 family domain-containing protein 2

GO:

id name namespace
GO:0006904 vesicle docking involved in exocytosis biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039810140.1 True 2432 mRNA 0.55 9 38719919 38842671

Neighbor

gene id symbol gene type direction distance location
lnx1 lnx1 coding upstream 38523 38636809 ~ 38681396 (+)
kdr kdr coding upstream 309702 38379216 ~ 38410217 (+)
clocka clock,LOC102778122 coding upstream 375256 38317933 ~ 38344663 (+)
nmu NA coding upstream 405569 38307874 ~ 38314350 (+)
chst14 chst14 coding upstream 456560 38260525 ~ 38263359 (+)
sgcb sgcb coding downstream 59162 38901833 ~ 38907367 (+)
LOC120564938 NA coding downstream 64915 38907586 ~ 38921011 (+)
fryl fryl coding downstream 108899 38951570 ~ 39014780 (+)
palld palld,LOC102787062 coding downstream 232626 39075297 ~ 39130840 (+)
fbxl5 fbxl5 coding downstream 360177 39202848 ~ 39211764 (+)
LOC120564886 NA non-coding upstream 167615 38534565 ~ 38552304 (+)
G101245 pdgfra non-coding upstream 205088 38514372 ~ 38514831 (+)
G101232 kit non-coding upstream 256340 38460674 ~ 38463579 (+)
G101211 NA non-coding upstream 346944 38372564 ~ 38372975 (+)
G101208 NA non-coding upstream 349518 38368697 ~ 38370401 (+)
G101278 rasl11b non-coding downstream 2613 38845284 ~ 38847544 (+)
LOC120565661 NA non-coding downstream 13233 38855904 ~ 38858082 (+)
G101289 NA non-coding downstream 29264 38871935 ~ 38872178 (+)
LOC120565971 NA non-coding downstream 93480 38936151 ~ 38943212 (+)
G101365 NA non-coding downstream 174040 39016711 ~ 39017673 (+)
G100843 NA other upstream 1229847 37463914 ~ 37490072 (+)
prrc2c NA other upstream 1761559 36932655 ~ 36958360 (+)
G100671 NA other upstream 2021050 36695437 ~ 36698869 (+)
sass6 sass6,LOC102776185 other upstream 2108173 36596041 ~ 36611746 (+)
smim24 NA other upstream 2185337 36495484 ~ 36534582 (+)
usp46 usp46 other downstream 23764 38866435 ~ 38880605 (+)
prdm5 prdm5 other downstream 480913 39323584 ~ 39361733 (+)
LOC120565708 LOC103369944,LOC100698021,LOC101482931,LOC102791229,LOC102291415,LOC102212992 other downstream 611449 39454120 ~ 39464450 (+)
reps2 reps2,LOC102792668 other downstream 718390 39561061 ~ 39592762 (+)
LOC120565298 cdkl5,LOC103356958 other downstream 851241 39693912 ~ 39740277 (+)

Expression


Co-expression Network