s1pr4 (s1pr4,LOC102777112,LOC100705658,LOC107100766)


Basic Information

Item Value
gene id s1pr4
gene name s1pr4,LOC102777112,LOC100705658,LOC107100766
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 21851042 ~ 21853412 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039810145.1
GTGTGTGACTTTGGCATACTTCCCCTTAAAAAATCTGTAGTCAGCGACACCTTCTCACTCACTCAGCATCACCACCAGCAGCCAGAttgtgtgttgtgtagaaGCAGAGCTCCAGTGGTTAGAGTGTGATGATAGCCTGTTTGATCACAGGAGTTCCACACTAATTCCCATGCAGCTCGTACCAGCTCGGTTCCGCCTGTTCCCACCCACAGCCTTGATCTTGACCAGCCCAGCTGTTGCTATGAATGTCTTTTCATccctcacctcctcctcatcctgccCACACTTGTACCACACACCCAGTTACCCCAGCAATATCACCATATCAAACGGCACCACCGCAGCCAACGAGATCAACCATGTGATTCTGCGGCATTACAACCACACCGGCCGCCTGCAGAACAGGACCATCTCAAACACCCAGAACCACATCAGTGCCCCCATGGCCGTCTTCCTCTTCTTCAGTATTCTCATCATCCTGGAGAATCTCCTGGTGCTGGTGGCTGTCATCTCCCGCATCCGCCACAGCCGGCGCTGGGTTTACGTCTGCATTGCCAACATCACACTTAGTGACCTCCTCACCGGCACTGCCTACCTGGTAAACATCTGTATGTCTGGCAGCCAGACGTTTCGCCTCACTCCTGCTCTGTGGCTTTTCAGGGAAGGGATGCTGTTCGTGGCCCTGGCAGCATCCATATTCAGTTTGTTGCTGATTGCTGTGGAGCGTTACACCACCATGATGAAGCCACTGCCTCAGAAGTCAGCCAGGAAGACCTACTATAGGATCTACGGCTTGGTGGCACTCTGCTGGGTTTTGGCACTGGTGATTGGCTTTCTCCCCTTGCTTGGCTGGAACTGTGTGTGCACCCTGGACGGATGTTCCaccctccttcctctctacTCCAAGACCTacatctttttctctctcatcaTCTTCTTCATCATCCTCCTGGCTATCGGCGTGCTCTATGGTGCCATCTACTGCCACGTGCACAAGAGTGCACAGCTGGGCCCAAAGCGCAGTCGCAAACGCTCTTTGGATCTGCTTAAAACTGTGATCACCATTGTTGGGGTCTTTTTGCTCTGCTGGGGACCACTGTTCCTGCTGTTACTAGTGGATTTCTTCTGTTCCTCCCGCCAGTGTGCACTGCTGTTCAGCGCTGACTTTTGCATCTCCCTGGCTGTCCTCAACTCCGGCCTGAACCCCATCATCTACGCCCTGGGCAGCAGTGAGTTGAGAAAGGCTATTGCTGAgctgctgtgctgctgctgcctgaagGCTGGCCTCTGTCACCCAGACAAATTCACATCCAAGGAGACCAGCAGCACCTCAGAGAGCAGGAGGGACAGTCTGAGGAACAGTTTTAACAAGGTCAGGAATCTGAGCGTGGCCTCCCCACCATCAACTCCTAACAAGCCTCGCAGGGCACCCCGAAAATATAGGCTGAGCTCCACCACCAGCTGCCTGTCAGTTTCAAGTGGTTAAACCACAGCGTGGTCCCCTCCCAAGTAAACAAGACCTGTGTGCACTGATACGCATCTAACCGTTTCCTCTGAGTTTTGGTTTGAATGTACTTTTCCTGCAGGTACTTGCACTGATGATTACATCAGAAAACCTGTTAAATAACAATGTATCCTGTAATAAGCAGTTTTTTACATTACCAAACATTCCTTTTTGCAATG

Function

symbol description
s1pr4 Predicted to enable G protein-coupled receptor activity. Acts upstream of or within neutrophil chemotaxis. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm and plasma membrane. Is expressed in brain; eye; heart; intestine; and kidney. Orthologous to human S1PR4 (sphingosine-1-phosphate receptor 4).

NR:

description
PREDICTED: sphingosine 1-phosphate receptor 4-like

GO:

id name namespace
GO:0003376 sphingosine-1-phosphate receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0038036 sphingosine-1-phosphate receptor activity molecular_function

KEGG:

id description
K04293 S1PR4, EDG6; sphingosine 1-phosphate receptor 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039810145.1 True 1683 mRNA 0.52 2 21851042 21853412

Neighbor

gene id symbol gene type direction distance location
enc3 LOC103373679,LOC103393865,LOC104920233,LOC107100952,LOC100702697,LOC102237431 coding upstream 258892 21577394 ~ 21592150 (+)
tmprss9 tmprss9 coding upstream 279243 21559203 ~ 21571799 (+)
LOC120565175 NA coding upstream 298788 21539227 ~ 21552254 (+)
timm44 timm44,LOC100710737,LOC102216179,LOC102779393,LOC102311498,LOC101473596 coding upstream 458528 21384522 ~ 21392514 (+)
hnrnpm hnrnpm,LOC100701615,LOC102779678 coding upstream 466838 21376432 ~ 21384204 (+)
ncln ncln,LOC102776228 coding downstream 42058 21895470 ~ 21909198 (+)
tnfaip8l1 tnfaip8l1,LOC104918070,LOC103363933 coding downstream 92764 21946176 ~ 21962548 (+)
LOC120565695 NA coding downstream 113780 21967192 ~ 21979558 (+)
LOC120565765 NA coding downstream 144507 21997919 ~ 22000097 (+)
LOC120565766 LOC107080871,LOC107654361 coding downstream 146785 22000197 ~ 22002659 (+)
G97096 NA non-coding upstream 106361 21743413 ~ 21744681 (+)
G97064 NA non-coding upstream 174693 21658550 ~ 21676349 (+)
G97009 NA non-coding upstream 394242 21368118 ~ 21456800 (+)
G97011 dmap1 non-coding upstream 477509 21372941 ~ 21373533 (+)
G96963 LOC102235645,LOC103464121,LOC107392658,LOC103138531,LOC103371596,LOC106936986,LOC107100776,LOC101155672 non-coding upstream 536522 21310912 ~ 21314520 (+)
G97170 cope non-coding downstream 87693 21941105 ~ 21944561 (+)
G97181 NA non-coding downstream 144001 21997413 ~ 21997743 (+)
LOC120565815 NA non-coding downstream 152363 22005775 ~ 22007353 (+)
G97190 NA non-coding downstream 180385 22033797 ~ 22035674 (+)
G97263 NA non-coding downstream 237977 22091389 ~ 22093374 (+)
G97093 NA other upstream 69042 21690897 ~ 21782000 (+)
lsm7 lsm7,LOC102793261 other upstream 293311 21554894 ~ 21557731 (+)
LOC120565275 ctxn1,LOC108166259,LOC106954365,LOC103138526,LOC104947303,LOC105353898 other upstream 409484 21411336 ~ 21441558 (+)
prkacba prkacb other upstream 1286218 20548999 ~ 20564824 (+)
G96513 NA other upstream 2319365 19530767 ~ 19531677 (+)
G97321 NA other downstream 430234 22283646 ~ 22287272 (+)
LOC120565764 LOC103367403 other downstream 632099 22485511 ~ 22491235 (+)
soat1 soat1,LOC102796196 other downstream 639545 22492957 ~ 22501015 (+)
LOC120566218 NA other downstream 718342 22571754 ~ 22576548 (+)
LOC120566227 NA other downstream 719057 22572469 ~ 22572551 (+)

Expression


Co-expression Network