LOC120564889 (rgs2,LOC103367537)


Basic Information

Item Value
gene id LOC120564889
gene name rgs2,LOC103367537
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 9080859 ~ 9083857 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039810147.1
TATAAAGTTTCCTGACAAGtcaagagggagaaggagaagagaTTGAGCCATGAGAGAGAACCTTGCTTTTGTGTCATCCCAAAACATGGCGTTCACTGACTGTATGAAACCCACTGAGCTCTCCACAGACAAGAAGGGGATAAAGAGGAAAAACTGGAGGAACAAAATAGGATTTCTCTTGAAGTCAAACTCCTCCCAGTCGATAGTACATGGGATGAAAATCAGATCTTACAGGCCGACTGCTGATGACACGCACCAGTGGGCGCAGTCACTTGACAAACTACTGAGTCATAAATATGGGAAAGCTGCGTTTTGTATCTTCCTGAAGTCTGAGTTCTGTGAAGAGAACATTGAGTTTTGGACAGCCTGTGAGGATTTCAGGACCCTCACTTCGCACAAAGAGCTGGCGTCCAAGGCCACCAGTATTTACGAGGAGTTCATTAAAAATGAAGCACCCAAAGAGATAAACCTGGATTTCCCTACAAAGAATGCCATCGCCCAGAGCCTCCATGAGCCCACTACGGATAGCTTCCTGGTAGCTCAGAGGAAAGTCTACAGCCTGATGGAGAACAACTCCTACCCCAGATTTATCTACTCCGACCTCTACAAAGAACTGTGTGCAGCTGCCAGGGGGAGAGGGCAAGCACATTAAGTCCTAGTCAAACCAGACTCTCACTTCTGAAGTCATTTGTTTACCGTTGTAACTGTGTGAATAGACCGTTGATGGCCTTCATTCCGTGCACTGCCTCGGGATAACAGACCTTGAATGCAAATCCTGAGCATAAACAATAACGGCGAGTGCAGAAAATGCAAAAGCGAAGCCATTTTTAGCTCGTCCTGCTGAGAGCTCGCAACAATGACGTCAAGATGATTAGGCAGGATGTTATATGCTGCAGGAGGCAGAGCACAGAGCACTTCTACCGGATGGGATTAGGGTTACATTTACTTCACTGGGCCATTACCTGCTTTTTCTTCACTACGCTATTAGAACTTGGTATTTTGGGCAATGATGCGGTTTCAAGAAAATGCTGTTTAAGTGCAACTGCATTCAAAGCTGAGATGACTGTCAAAACACTTTACACTTAACTCCCATCTCTTACCGACAATCCTGTTAGAATGCGTTTCTGTGCTGATATCCACTTGAAGACTTTGCACAGTTGTCATATACACATGatgactttctctctctgtttctcggGTTTTCATTTTCACGGATGTGCTTGGATCTGTTTACACAAAAAGCGCAATTTTAACTTTTTGTGTTACTATTCACAATTTCCATCCAAGACTGTTTTGGATTGAAATTATTGACAATGttatttattgtaattattGCATTTGTTGACGGTGAATTTAAGTTTGCAGGCAGCTGGACTGCTcaagaaataaaacgtgttttttcAATTCTGAAA

Function

symbol description
rgs2 Predicted to enable GTPase activator activity. Acts upstream of or within negative regulation of neural crest formation and neural crest cell development. Is expressed in cephalic mesoderm; digestive system; nervous system; and neural crest cell. Orthologous to human RGS2 (regulator of G protein signaling 2).

NR:

description
PREDICTED: regulator of G-protein signaling 5-like

GO: NA

KEGG:

id description
K18154 RGS2; regulator of G-protein signaling 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039810147.1 True 1412 mRNA 0.43 5 9080859 9083857

Neighbor

gene id symbol gene type direction distance location
LOC120566074 LOC104935955,LOC103367504 coding upstream 10183 9067178 ~ 9070676 (+)
LOC120564878 NA coding upstream 18823 9057341 ~ 9062036 (+)
LOC120564973 LOC103367494,LOC104965670,LOC104935957 coding upstream 47179 9021517 ~ 9033680 (+)
rgs4 NA coding upstream 866359 8208453 ~ 8214500 (+)
LOC120565295 tsta3,LOC104953080 coding upstream 1206873 7868591 ~ 7873986 (+)
LOC120566012 NA coding downstream 322853 9406710 ~ 9505927 (+)
LOC120566014 NA coding downstream 378588 9462445 ~ 9473374 (+)
trnah-gug_12 NA coding downstream 488441 9572298 ~ 9572369 (+)
depdc1a depdc1 coding downstream 491401 9575258 ~ 9587669 (+)
LOC120566020 LOC103374322,LOC104940880,LOC103131468,LOC106964853 coding downstream 505299 9589156 ~ 9603575 (+)
G94169 NA non-coding upstream 79153 9001456 ~ 9001706 (+)
G94167 NA non-coding upstream 80399 9000163 ~ 9000460 (+)
G94153 NA non-coding upstream 427435 8653056 ~ 8653424 (+)
G94151 NA non-coding upstream 465225 8614911 ~ 8615634 (+)
G94075 LOC104926357,LOC103367455,LOC102788643 non-coding upstream 800887 8278804 ~ 8279972 (+)
G94192 uchl5 non-coding downstream 5971 9089828 ~ 9096292 (+)
G94201 NA non-coding downstream 85462 9169319 ~ 9169757 (+)
LOC120566015 NA non-coding downstream 350864 9434721 ~ 9437621 (+)
G94232 NA non-coding downstream 400146 9484003 ~ 9485965 (+)
LOC120566016 NA non-coding downstream 410124 9493981 ~ 9495357 (+)
G94073 rgs5,LOC107393027,LOC104951458,LOC100708109,LOC105932873 other upstream 794423 8237370 ~ 8286436 (+)
LOC120565614 NA other upstream 1175612 7896145 ~ 7905247 (+)
LOC120565294 pycrl other upstream 1190682 7878919 ~ 7890177 (+)
G93938 NA other upstream 1730272 7349810 ~ 7350587 (+)
rhpn1 rhpn1 other upstream 2699261 6354892 ~ 6381598 (+)
G94199 LOC103367571,LOC102312400,LOC100710958,LOC101467655 other downstream 63305 9147162 ~ 9168877 (+)
LOC120566011 NA other downstream 300648 9384505 ~ 9543535 (+)
G94239 NA other downstream 468439 9552296 ~ 9557568 (+)
G94281 NA other downstream 733764 9817621 ~ 9879198 (+)
LOC120565620 NA other downstream 760414 9844271 ~ 9846275 (+)

Expression


Co-expression Network