b4galt6 (b4galt6,LOC104925469)


Basic Information

Item Value
gene id b4galt6
gene name b4galt6,LOC104925469
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 36351943 ~ 36373606 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039810151.1
CTGTCTCTGCAGTGCCAGCAGAAAATGAAAAGGAGGCAGGCTCGACATCTCTTAGTTTATTTCTCATATCGATTATCCTGGCCGTTTGTGTTTTGAATGCCACAGTCGTGCGGAGACACCCGGTGGCATGACTGGACTCCCGAGTGCGCGGTTTGATGAAGTAGTGCGCCGCCTGAGCTGGAAACATCGCGCCGGCCGAGAGTAGAGCTGTGTGGGTGAAGGCAGAGCGTACCTGCCTCCTTCAATGACCAACCTTCAGTGCTGGCGATAAAAGCTTCGCTGGCGACACCGTAACCAACCATGGAAGGCTACCATGAGTACCCTTAATTAGCTTGCTGCCCAGCTCTTAGCCCGTAGGATAACGGTTTCACTATGGCCGGCCGGCGGTGCTCCATGCGCCTTTTAGTCGCCTGATATTAACCCGACAGGCCTGCTTTTTCCATCTGGAAGTTTCTTGGCAGGGGAAagcaggccagctagcatcgctagcgtttgCCTTTTCCGTGCTGCTTTCTCTGGGCTTTAACGGTGCAGATTTGCCCATGACCACACCGTTGACACTGCAGTCCAACAATTCGGGGACTTTTTAATTCCAAGAAGTATTTTATGGGATTTATATCGGCGAATGAGAGACGGGCCTAAGCCAAGATGGTGAACTGGAGGCGGCTGCTGCGAATGTCCAACCGATCGTTTCTGGCCTTCATATTCTTCTTCTCCATGTCCACCACTTGTCTCTACTTCATTTACGTGGCTCCTGGAATAGCCAACACGTACTTCTTCATGGTGCAGGCTCAGGGCATCATGTTGAGGGACAATGTGAGGACCATCGGCCAGATGATCCGGTTGTACACCAACAAGAACAGTACACTCAACGGGACGGACTATCCTGACGGCAGTAACTCCAGTGAATACCTGGTGCAGCCAACCACGTACCTCCCTGAGAACTTCACCTACGCCCAGAACCTCCCCTGCCCACAGCGATTACCTTCTATGAAGGGCCTTATGGAAGTGAACATGACAGAGATCCCTATGGAGGAGATAGAACTCCAGTTCTCCAAGTTCTTTGACATGGAGTTTGGAGGCCATTGGAAACCAAAGGACTGCAGACCTCGCTGGAAGGTGGCCATCCTGATTCCATTTAGAAACCGGCATGAACATCTCCCAATCCTATTCCAACACCTCATCCCCATGCTGCAGAGACAGCGGCTGCAGTTTGCCTTCTACGTCATCGAACAGagcGGGAGCCAGCCCTTCAACAGAGCTATGCTGTTTAACGTGGGCTTCCTGGAGGCCATGAAGGACTTGGACTGGGACTGCCTGATCTTCCACGATGTTGACCACATCCCAGAGAACGACCGAAACTACTACGGCTGTGGTCAGATGCCACGCCACTTTGCTGCCAAGCTGGACAAATACATGTACATTCTTCCATACAGCGAGTTCTTTGGCGGGGTGAGTGGACTCACTGTGGAGCAGTTTCGCAAGATTAACGGCTTTCCCAATGCATTCTGGGGCTGGGGAGGAGAGGATGACGACTTGTGGAACAGGGTTCACTATGCCGGTCTGAATGTCACGCGACCGGACGGAGAGATCGGCAAGTACAAGTCCATTCCTCACCACCACAGAGGGGAGGTGCAGTTCCTCGGGAGGTACAAGCTGCTGAGGTATTCCAAAGAGCGCCAACACCTGGACGGCCTCAACAACCTCCACTACAGCCCCCACATCTCCCTAAGCAGCCTCTACAAGAACGTCACGGTGGAGCTGTCCCCCGAGCTCGCCCCCATCATAGACTACTGAACTGCCCCCAGCCCCTCCTCCGCACCCCCAGGCCACCCAGCTCCCCTCCGGCCTGGCCTCACCAGCGTTCGGCCATTCAGAGGCAGAGAGGTGGGGAGGGCACAGGccgggaggggggagggggagacgAGGCGCACCATGTAATGCTGCCAAGAAATCTTagccaggaaaaaaaagaaaagaaaatccaaaCCGAAAAAATGAAGAGGCAGTGGCAAGTCTctcaaaggtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

symbol description
b4galt6 Enables UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity. Acts upstream of or within glycosphingolipid metabolic process. Predicted to be located in Golgi cisterna membrane. Predicted to be integral component of membrane. Predicted to be active in Golgi apparatus. Orthologous to human B4GALT6 (beta-1,4-galactosyltransferase 6).

NR:

description
beta-1,4-galactosyltransferase 6-like isoform X1

GO:

id name namespace
GO:0006687 glycosphingolipid metabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0008489 UDP-galactose molecular_function

KEGG:

id description
K07553 B4GALT6; beta-1,4-galactosyltransferase 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039810151.1 True 2098 mRNA 0.54 9 36351943 36373606

Neighbor

gene id symbol gene type direction distance location
ttr ttr coding upstream 2213 36343295 ~ 36349730 (+)
LOC120565107 NA coding upstream 24565 36298542 ~ 36327378 (+)
LOC120565108 NA coding upstream 67137 36237852 ~ 36284806 (+)
LOC120565109 NA coding upstream 84128 36261939 ~ 36267815 (+)
LOC120566096 NA coding upstream 614933 35699825 ~ 35737010 (+)
ctns ctns coding downstream 36262 36409868 ~ 36422475 (+)
nfic nfic,LOC102792909 coding downstream 189848 36563454 ~ 36594440 (+)
dohh dohh,LOC102789931 coding downstream 330846 36704452 ~ 36712253 (+)
rsph4a LOC104961853 coding downstream 339769 36713375 ~ 36720899 (+)
lonp1 lonp1 coding downstream 351583 36725189 ~ 36741996 (+)
G100524 NA non-coding upstream 56450 36295138 ~ 36295493 (+)
G100523 NA non-coding upstream 59700 36292026 ~ 36292243 (+)
G100519 NA non-coding upstream 62257 36289449 ~ 36289686 (+)
G100492 NA non-coding upstream 207855 36143878 ~ 36144088 (+)
G100462 NA non-coding upstream 489616 35862007 ~ 35862327 (+)
G100535 NA non-coding downstream 49254 36422860 ~ 36423129 (+)
G100536 NA non-coding downstream 50986 36424592 ~ 36449148 (+)
G100557 NA non-coding downstream 85915 36459521 ~ 36461470 (+)
G100566 NA non-coding downstream 95922 36469528 ~ 36542174 (+)
G100537 NA non-coding downstream 109680 36483286 ~ 36485692 (+)
dsg2.1 NA other upstream 117344 36215464 ~ 36234599 (+)
G100174 calr3 other upstream 1844391 34504643 ~ 34507552 (+)
G100087 NA other upstream 2473612 33875209 ~ 33878331 (+)
LOC120566032 naaladl2,LOC102797677,LOC101487368 other upstream 2589024 33243213 ~ 33762919 (+)
nlgn1 nlgn1,LOC102797975 other upstream 3473310 32436847 ~ 32878633 (+)
G100568 lmnb2 other downstream 99932 36473538 ~ 36475195 (+)
smim24 NA other downstream 121878 36495484 ~ 36534582 (+)
sass6 sass6,LOC102776185 other downstream 222435 36596041 ~ 36611746 (+)
G100671 NA other downstream 321831 36695437 ~ 36698869 (+)
prrc2c NA other downstream 559049 36932655 ~ 36958360 (+)

Expression


Co-expression Network