ctns (ctns)


Basic Information

Item Value
gene id ctns
gene name ctns
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 36409868 ~ 36422475 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039810154.1
GCCGCAAACCCCCGGGAGTGAGAAACAGAACAAGATGCCACACTGcaacagaagaaagaagaagagtcATGTGACTGAGCAGCTGCGAAACAGGAAGCTGTCCACTCAACCCTCAACTCAGCTCCAACATGGCTGCTCTGGGCAGGTTGAACACATGGCTTCCTGcccacctgctgctgctgctgctgctgctggggacGCTGAGCTGCATCTCTGAGTCCAGAGTGTTCTTGTTTGCTCCAGAGTCTGTCACACTTGAGGAGAACTCTAAAGCCAACGTCACCATTACCACCAGtTCCCCTGTCAACCAGTCGGCTGTCATTTGGTTCAACGTGACCTTCAGCTCCAAGACAAACTACTCGTCTGTGATCAGCGTGCCTGAGCAGGTGTTGCTGCCCGCGCAGAAGTCCTCGCTCACCTTCGACGTGACGGCCCACGATGTCGGCCAGGTGACCACGTACCTGCTCAGCAACAGCACGGAGCTGGACAGcCCGTCCGTCAGGATCCACTTCCTGGTAGTCCATAGCGACATCCTGTCTGTGTTCAGTCAGGTGATTGGCTGGATTTACTTCCTGGCCTGGTCGGTGTCCTTCTATCCACAAGCCTGGGAGAACTGGAGGAGAAAAAGTGTTGTAGGTCTCAACTTTGACTTCCTGGCTCTCAACCTAACTGGCTTCATCGCCTACAGTGTCTTCAACATAGGACTGTTCTGGGTGCCCTATATAAAGGAGGAGTTCCTGACGAAGAACCCGAATGGAATCAACCCGGTCACCGCAAACGATGTCTTCTTCAGTCTCCACGCTGTGCTGCTCACTTTGGTCTACATCAGCCAGGCTGCTGTGTACGAGAGGGGGGGTCAACAGGTGTCCCGCACAGCCGTGTTCctgctggtgattggctggacCTTTGCCCTGGTCAGCTTGTTTCTTGCCGTGGCCAAACAGATCACCTGGTTGGATTACCTCTACTATTTCTCCTACATTAAACTAGCCGTCACTCTGATCAAATATGTGCCGCAGGCCTACATGAACTACATGAAACAGAGCACTGAGGGCTGGAGCATAGGCAACGTGCTGCTGGACTTCACAGGCGGAACCCTCAGTATCCTGCAGATGATCATACAGTCCTACAACAACGACGAGTGGAGGCTGATTTTTGGCGATCCTACGAAGTTTGGTCTGGGCCTGTTCTCCGTGGTGTTCGACGTCCTCTTCATGGCTCAGCACTACTGCCTGTACAGACAGCGAGCGGAGTACGAGCCTGTCGCCGGGCAACAGGAGGACTGATGTTGGCGCGGGACACACCGTCCAAAGACTCCCAATCACAAGACTCAGCTCCTCTGAGTCGACCAATCAACGACTGGGCTGAGGAGAAGTCACGCAGGTGTCACGATGATGTGTGGCAGAGGTCTCTGCAGCTTTTACACGTTTACACTGATTTGTATTGCCGCCTTCTTTTATATATCTGCAGCAGAACTTGTCTTTTTTTACCACTGTCTGAAAAGAAGAACAACTGATGTAATGATGACAATGTAAAAACGTTTAATTAAATGCAAtatcacaacaaaaaaa
>XM_039810155.1
gtgtgtgtatgtgttgcagACATGGCTGCTCTGGGCAGGTTGAACACATGGCTTCCTGcccacctgctgctgctgctgctgctgctggggacGCTGAGCTGCATCTCTGAGTCCAGAGTGTTCTTGTTTGCTCCAGAGTCTGTCACACTTGAGGAGAACTCTAAAGCCAACGTCACCATTACCACCAGtTCCCCTGTCAACCAGTCGGCTGTCATTTGGTTCAACGTGACCTTCAGCTCCAAGACAAACTACTCGTCTGTGATCAGCGTGCCTGAGCAGGTGTTGCTGCCCGCGCAGAAGTCCTCGCTCACCTTCGACGTGACGGCCCACGATGTCGGCCAGGTGACCACGTACCTGCTCAGCAACAGCACGGAGCTGGACAGcCCGTCCGTCAGGATCCACTTCCTGGTAGTCCATAGCGACATCCTGTCTGTGTTCAGTCAGGTGATTGGCTGGATTTACTTCCTGGCCTGGTCGGTGTCCTTCTATCCACAAGCCTGGGAGAACTGGAGGAGAAAAAGTGTTGTAGGTCTCAACTTTGACTTCCTGGCTCTCAACCTAACTGGCTTCATCGCCTACAGTGTCTTCAACATAGGACTGTTCTGGGTGCCCTATATAAAGGAGGAGTTCCTGACGAAGAACCCGAATGGAATCAACCCGGTCACCGCAAACGATGTCTTCTTCAGTCTCCACGCTGTGCTGCTCACTTTGGTCTACATCAGCCAGGCTGCTGTGTACGAGAGGGGGGGTCAACAGGTGTCCCGCACAGCCGTGTTCctgctggtgattggctggacCTTTGCCCTGGTCAGCTTGTTTCTTGCCGTGGCCAAACAGATCACCTGGTTGGATTACCTCTACTATTTCTCCTACATTAAACTAGCCGTCACTCTGATCAAATATGTGCCGCAGGCCTACATGAACTACATGAAACAGAGCACTGAGGGCTGGAGCATAGGCAACGTGCTGCTGGACTTCACAGGCGGAACCCTCAGTATCCTGCAGATGATCATACAGTCCTACAACAACGACGAGTGGAGGCTGATTTTTGGCGATCCTACGAAGTTTGGTCTGGGCCTGTTCTCCGTGGTGTTCGACGTCCTCTTCATGGCTCAGCACTACTGCCTGTACAGACAGCGAGCGGAGTACGAGCCTGTCGCCGGGCAACAGGAGGACTGATGTTGGCGCGGGACACACCGTCCAAAGACTCCCAATCACAAGACTCAGCTCCTCTGAGTCGACCAATCAACGACTGGGCTGAGGAGAAGTCACGCAGGTGTCACGATGATGTGTGGCAGAGGTCTCTGCAGCTTTTACACGTTTACACTGATTTGTATTGCCGCCTTCTTTTATATATCTGCAGCAGAACTTGTCTTTTTTTACCACTGTCTGAAAAGAAGAACAACTGATGTAATGATGACAATGTAAAAACGTTTAATTAAATGCAAtatcacaacaaaaaaa

Function

symbol description
ctns Predicted to enable L-cystine transmembrane transporter activity. Acts upstream of or within glomerular filtration; regulation of autophagy; and renal absorption. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in lysosomal membrane. Used to study cystinosis. Human ortholog(s) of this gene implicated in cystinosis. Orthologous to human CTNS (cystinosin, lysosomal cystine transporter).

NR:

description
cystinosin-like

GO: NA

KEGG:

id description
K12386 CTNS; cystinosin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039810154.1 True 1571 mRNA 0.52 11 36409868 36422475
XM_039810155.1 False 1464 mRNA 0.52 10 36411869 36422475

Neighbor

gene id symbol gene type direction distance location
b4galt6 b4galt6,LOC104925469 coding upstream 36262 36351943 ~ 36373606 (+)
ttr ttr coding upstream 60138 36343295 ~ 36349730 (+)
LOC120565107 NA coding upstream 82490 36298542 ~ 36327378 (+)
LOC120565108 NA coding upstream 125062 36237852 ~ 36284806 (+)
LOC120565109 NA coding upstream 142053 36261939 ~ 36267815 (+)
nfic nfic,LOC102792909 coding downstream 140979 36563454 ~ 36594440 (+)
dohh dohh,LOC102789931 coding downstream 281977 36704452 ~ 36712253 (+)
rsph4a LOC104961853 coding downstream 290900 36713375 ~ 36720899 (+)
lonp1 lonp1 coding downstream 302714 36725189 ~ 36741996 (+)
plpp6 plpp6,LOC103354162,LOC102785296 coding downstream 453172 36875647 ~ 36882393 (+)
G100524 NA non-coding upstream 114375 36295138 ~ 36295493 (+)
G100523 NA non-coding upstream 117625 36292026 ~ 36292243 (+)
G100519 NA non-coding upstream 120182 36289449 ~ 36289686 (+)
G100492 NA non-coding upstream 265780 36143878 ~ 36144088 (+)
G100462 NA non-coding upstream 547541 35862007 ~ 35862327 (+)
G100535 NA non-coding downstream 385 36422860 ~ 36423129 (+)
G100536 NA non-coding downstream 2117 36424592 ~ 36449148 (+)
G100557 NA non-coding downstream 37046 36459521 ~ 36461470 (+)
G100566 NA non-coding downstream 47053 36469528 ~ 36542174 (+)
G100537 NA non-coding downstream 60811 36483286 ~ 36485692 (+)
dsg2.1 NA other upstream 175269 36215464 ~ 36234599 (+)
G100174 calr3 other upstream 1902316 34504643 ~ 34507552 (+)
G100087 NA other upstream 2531537 33875209 ~ 33878331 (+)
LOC120566032 naaladl2,LOC102797677,LOC101487368 other upstream 2646949 33243213 ~ 33762919 (+)
nlgn1 nlgn1,LOC102797975 other upstream 3531235 32436847 ~ 32878633 (+)
G100568 lmnb2 other downstream 51063 36473538 ~ 36475195 (+)
smim24 NA other downstream 73009 36495484 ~ 36534582 (+)
sass6 sass6,LOC102776185 other downstream 173566 36596041 ~ 36611746 (+)
G100671 NA other downstream 272962 36695437 ~ 36698869 (+)
prrc2c NA other downstream 510180 36932655 ~ 36958360 (+)

Expression


Co-expression Network