LOC120564940 (LOC106537324)


Basic Information

Item Value
gene id LOC120564940
gene name LOC106537324
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 39512710 ~ 39513658 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039810207.1
CTTCCTCTGGCCTCCTCTCAGTCTGTCCCTCTGCCTTTCCCCATGTCTCACGGCACCACCACCCTGGCCTTCATCTTTCAGGGCGGTGTGTTGGCTGCAGCGGACACTCGTTCCAGTTGCTCTGGGCTCGTGGCGTGCCCAGCCGCCCAGAAGATCCTGCCTGTTCACAGTCACTTGGTGGGCACTACTTCAGGTACTTCGGCTGACTGTGCCCTTTGGAAACGGATTCTGGCTCGAGAACTGCGGCTCTACCAACTCCGCCACGGCCGGCGGTTGTCCACGAACGGAGCTGCCAAATTGCTTTCTCACATGCTTCACCCGTTTAAGGGAACCGAGCTGTGTGTGGCTGCCACGTTGTGTGGGTGGGACGGAGGAGAGAGGCAAATGGCTGATCTTGGGAAGTCTGTAGATACAAGTCTTGAAAATGCCGCTCTGGCTCAGAGCACTTCTTCAACAATTGTTGGTCAACAGTGCTTTACTAGAAAGAAAGTGAGTTTATCTGGACCCAGTCTGTACTATGTGTGCAGTGATGGTACTCGCCTGCAGGGAACGCTCTTCTCCGTGGGCTCGGGATCACCCTATGCCTACTCCATTTTGGACCAAGGGGTTCAATGGGGGCTGACAGTGGACGAGGCCACATCAATAGCCAGAGAGGCTGTATACAGAGCcacacacagggatgcatacTCAGGAAACTGTGTAGACATCTATTACATCTCCTCAAAAGGGTGGACACGCAGGAGCAGAGAGGACTTGAAAGAGGAATAttacagagaaaaagaaagacaagagagagacaggacgTGACTTTGGCTGAGTAAAGACATGAAACATCAAAAATGgcaagagagaagaaaaggcaAACATCGGCGAGTATATTAGA

Function

NR:

description
PREDICTED: proteasome subunit beta type-11-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039810207.1 True 883 mRNA 0.52 2 39512710 39513658

Neighbor

gene id symbol gene type direction distance location
slc34a2b LOC106512275,LOC107396065,LOC108240151 coding upstream 25232 39478853 ~ 39487478 (+)
ndnf ndnf coding upstream 206472 39295336 ~ 39306238 (+)
fbxl5 fbxl5 coding upstream 300946 39202848 ~ 39211764 (+)
palld palld,LOC102787062 coding upstream 381870 39075297 ~ 39130840 (+)
fryl fryl coding upstream 497930 38951570 ~ 39014780 (+)
LOC120564941 LOC100699266,LOC102791790,LOC102212335,LOC102290083,LOC101480793 coding downstream 3215 39516873 ~ 39544466 (+)
nhsa LOC103369891 coding downstream 84046 39597704 ~ 39661492 (+)
LOC120566071 rai2 coding downstream 151563 39665221 ~ 39675560 (+)
LOC120565276 ap1s2,zgc:162858,LOC106942561,LOC107095773,LOC106921341,LOC103356955,LOC102795551,LOC101477195,LOC103463884,LOC102192022,LOC102311043 coding downstream 234090 39747748 ~ 39766179 (+)
shroom2a shroom2 coding downstream 262135 39775793 ~ 39816716 (+)
G101484 NA non-coding upstream 74645 39437654 ~ 39438065 (+)
G101464 NA non-coding upstream 233757 39278652 ~ 39278953 (+)
G101437 NA non-coding upstream 321929 39190066 ~ 39190781 (+)
G101427 NA non-coding upstream 333964 39178244 ~ 39178746 (+)
G101364 NA non-coding upstream 489130 39018380 ~ 39023580 (+)
G101519 LOC103356959,LOC104928288 non-coding downstream 166420 39680078 ~ 39680526 (+)
G101579 NA non-coding downstream 357998 39871656 ~ 39872173 (+)
G101600 NA non-coding downstream 391378 39905036 ~ 39908510 (+)
G101666 NA non-coding downstream 470812 39984470 ~ 40018693 (+)
G101674 rp2 non-coding downstream 487247 40000905 ~ 40003839 (+)
LOC120565708 LOC103369944,LOC100698021,LOC101482931,LOC102791229,LOC102291415,LOC102212992 other upstream 48260 39454120 ~ 39464450 (+)
prdm5 prdm5 other upstream 150977 39323584 ~ 39361733 (+)
usp46 usp46 other upstream 632105 38866435 ~ 38880605 (+)
G100843 NA other upstream 2022638 37463914 ~ 37490072 (+)
prrc2c NA other upstream 2554350 36932655 ~ 36958360 (+)
reps2 reps2,LOC102792668 other downstream 47403 39561061 ~ 39592762 (+)
LOC120565298 cdkl5,LOC103356958 other downstream 180254 39693912 ~ 39740277 (+)
atp10a atp10a other downstream 1001435 40515093 ~ 40559895 (+)
G102165 NA other downstream 1939016 41452674 ~ 41453306 (+)

Expression


Co-expression Network