sox14 (sox14,LOC101484987,LOC103365676,LOC104926635,LOC100695210)


Basic Information

Item Value
gene id sox14
gene name sox14,LOC101484987,LOC103365676,LOC104926635,LOC100695210
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 29266362 ~ 29268436 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039810223.1
GCTTTTGGCTCGTATTCACGCTCTTCCGCTCATTTCCAAGCCAGGTGCTTGACGACAAAcctcagagagggagagagagagagagagagagagcgagagagagagagagagagggagagtgcgtcgcagaaaaaaaaataacacttttaCGACTCCTGCAAACTGACTGCGGAACATTGCTTTCACCTTTGTGGATTTCTTTACGTGTGTGCATcttacatgtatttttttctcctgtattgCCTGCCGCAGGTCTGAAAGAGAGTTGTAACCGGACTTGAACGAACGCGCATCAGTGTTTTAACTGGAAAAGCAAAAACCGGGCgctggatttttattttttttctcttttatttttgctgttttCCAGCCAGACTCAGAACATCTCAGACGTGGCATGACTGGTATCTGGCATCTAGACAGGTGAATAGTTTCCCTTCCTTCCGAAAAGAACTTTTCCTCGTCATTAAACATTGGGGATAAAAAAAGTAtaggctacttttttttttaaagatgtcaAAGCCTGCTGATCATATCAAGAGACCCATGAACGCGTTCATGGTTTGGTCCCGGGGCCAGAGGAGAAAAATGGCACAGGAGAATCCCAAAATGCACAACTCGGAGATCAGCAAAAGACTGGGCGCCGAGTGGAAGCTGCTGTCCGAGTCTGAGAAGAGACCTTACATCGACGAGGCCAAGAGGCTGCGCGCTCAGCACATGAAGGAGCACCCCGACTACAAGTACAGACCCAGGCGCAAGCCCAAAAATCTGCTCAAGAAGGACAGGTACGTTTTCCCTTTGCCTTACCTCGGGGACACCGACCACTTGAAGGGACTCCCCATGTCGGCCGCGGACTCTCTGTTGAGCCACTCCGAGAAAGCCCGAGCGTTTCTGCCGCCGACGAGCGCCCCGTACTCTTTCCTCGACCCGAGCCAGTTCAGCTCCAGCGCCATCCAGAAGATGACGGAGATGCCGCACGCGCTGAGCACCAGCACTTTGCCCTACGCGTCCTCTTTGGGATATCAGAACGGTGCGTTCGGCACCCTTGGGTGCCCCAGTCagcacacccacacccacccgTCGCCCACAAACCCGGGCTACGTCGTCCCGTGTAACTGCTCGGCCTGGTCCACGTCAAGTTTACAGCCCCCGGTGGCCTACATACTTTTTCCAGGTATGACCAAGACTGGGATAGACCCTTACTCATCCACACACGCCACTGCCATGTAACCCTCAAagactcttttttcttttctttttttttaattcacttgAATACTGAAATGCATGTAAATATAATATGGACAGCGCGCCCATTGAGAAGGCATGAACATTATTAGCTGCCTTGGACTTGTTAtggcaaaaaaagagagagagaaaaagaaacttTTCCAGAAATCCAACAAGTTCCTGAGTCGTGCAGAGGAGCTGGGATTTGGTGTAAAGGACGGTGCCCTGTGAACTGtaagaaatgtaaatgttatAACGTTTATGGCAGCCCGAAAAAGGAGGCCTTTAACTTTATTTATTGTGTACATTTCAATGCTGATATGCTGATTTGTGTTGATTATCGATAGGgaactctttttatttttgacaatttggctTGCACAATTAGCATTCTTATTTCCTGTATAGGCCTAAGTAGTTTACATTTTTGGCACTCGTAATTTTATGAAAAATCTCAATCTAAATCAGAACCTATAGGCTGGACTATATACGggtcatattgtttatattgatCAAAACCTGGCACATAAAACTAGACGGTCTATTTAAGAtgacaaagagaagaaaaaaaaacccatttacgttcaaatgttttattttgctttttttccctgTGGTTCAGTGCTAATATAGTCACacgcgttttgttttgttttcgtTTTTAAGGATAACTTCTATTTGAATTCAAGGagttatatatgtgtattatcATCCAAGATGGTAATTTAAAACCTGTCATGTTATGGAAAGGATAATGTATCTTGAAGGTTGATACCTCCTGCTCTTTGTTCAATTGCTGAGCAAAGGCATTTCGAATAAAGACAATCTGTCTTCAACGCTATCAA

Function

symbol description
sox14 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within hypothalamus development. Predicted to be located in nucleus. Orthologous to human SOX14 (SRY-box transcription factor 14).

NR:

description
PREDICTED: transcription factor SOX-14

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0021854 hypothalamus development biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function

KEGG:

id description
K09267 SOX1S; transcription factor SOX1/3/14/21 (SOX group B)

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039810223.1 True 2075 mRNA 0.45 1 29266362 29268436

Neighbor

gene id symbol gene type direction distance location
hdlbpa hdlbp coding upstream 201260 29042904 ~ 29065102 (+)
dtymk dtymk coding upstream 299779 28959154 ~ 28966583 (+)
agxta agxt,LOC102212595,LOC102798621 coding upstream 307266 28953375 ~ 28959096 (+)
fam20b fam20b,LOC102783880 coding upstream 379304 28865643 ~ 28887058 (+)
echdc2 echdc2 coding upstream 511340 28746989 ~ 28755022 (+)
LOC120565897 cldn18 coding downstream 58081 29326517 ~ 29331778 (+)
hs2st1b LOC103365674,LOC100712187 coding downstream 83966 29352402 ~ 29373466 (+)
lmo4b lmo4 coding downstream 153943 29422379 ~ 29436496 (+)
lrrc8c lrrc8c coding downstream 473957 29742393 ~ 29755409 (+)
lrrc8db LOC102192663,LOC101487848,LOC104931916,LOC103368774 coding downstream 495233 29763669 ~ 29772684 (+)
G99238 NA non-coding upstream 109255 29156684 ~ 29157107 (+)
G99217 NA non-coding upstream 231956 29019535 ~ 29034406 (+)
LOC120566147 NA non-coding upstream 273752 28992228 ~ 28992610 (+)
G99189 NA non-coding upstream 294276 28970487 ~ 28972086 (+)
G99108 NA non-coding upstream 578244 28687882 ~ 28688118 (+)
G99261 NA non-coding downstream 169726 29438162 ~ 29438722 (+)
G99292 NA non-coding downstream 324929 29593365 ~ 29593623 (+)
G99299 NA non-coding downstream 427171 29695607 ~ 29695933 (+)
G99327 NA non-coding downstream 491607 29760043 ~ 29760366 (+)
G99329 NA non-coding downstream 505881 29774317 ~ 29775080 (+)
ralgps2 ralgps2 other upstream 400875 28775375 ~ 28865487 (+)
LOC120565530 LOC100702602,LOC101154857,LOC107096371,LOC105928898,LOC101076602,LOC108230771 other upstream 491809 28772362 ~ 28774553 (+)
LOC120564865 NA other upstream 1120037 28137269 ~ 28146325 (+)
pip5k1ca pip5k1c,LOC106917759,LOC106949671,LOC107393349,LOC103370870 other upstream 1181975 28027964 ~ 28084387 (+)
ncanb ncan,LOC104966594,LOC107554802 other upstream 1433507 27659696 ~ 27832855 (+)
G99297 NA other downstream 395197 29663633 ~ 29665090 (+)
si:ch73-389b16.1 ccdc18 other downstream 1159067 30427503 ~ 30429291 (+)
G99545 NA other downstream 1542082 30810518 ~ 30811236 (+)
slc1a7b LOC103368436,LOC102788729,LOC102303821 other downstream 1827445 31095881 ~ 31302827 (+)
LOC120564930 NA other downstream 2345453 31613889 ~ 31643446 (+)

Expression


Co-expression Network