dmrta2 (dmrta2)


Basic Information

Item Value
gene id dmrta2
gene name dmrta2
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053120.1
NCBI id CM020917.1
chromosome length 41568296
location 22775008 ~ 22778191 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039810236.1
AATGAAAACGTAGGGGCAAcaatagagagggggagagagggatcTGTATCCACTGACAATCTCTGGAGGAAGTTAGTGTCTCAGGCTGCGGCGAGTAGCAACCTCGGCTCCTCCTGGACAGTTTAAACTTTCTGTCGGGGAGGAATGATCTCTCCTCTAGGCTCCTGCTCTTTTTGGATTTTAACTCGACAATATCTTCATATTTTTTGCTTCTTCTGCAGACTCCTCGAACAGTTTACTTTAGAGTTTCGGTCAtagttttttccttttcttcttgcACCATAATCTCATCAGTAGAAAGACATCGTTGACTTCACCTGTTGCCCAGAGATGTTGAGAATCGCCGAGCAGATGTGAACGGCTCAACACCAGCATAACTCAAACAAATCGTTCAAAAGAAAGCCGTTTTCTAGTTTCTAGTTCAGTTACATCAGTGAGGAACACGGGCATGGATCTGAGACCGGAGCACCCCACAGTCTCCTCTGCCTCTCAAGTCCACCCAggggcggcggcggcggcggcggcggcggcggcagccTCCATCCCGGTGTCCATGGCCAGCAGCCTTCTGCGCGGCCCTCCGCTCATCTTGCGCGCCGCGGACAAGTACCCGCGTACCCCGAAGTGTGCCCGCTGCAGGAACCACGGCGTGGTTTCCGCGCTGAAGGGTCACAAGCGCTACTGCCGCTGGAAGGACTGTATGTGCGCCAAGTGCACGCTGATCGCCGAGAGGCAGCGAGTGATGGCAGCGCAGGTGGCGCTGCGGCGGCAGCAGGCGCAGGAGGAGAACGAAGCCCGGGAGCTGCAGCTGCTCTACGGCACGGCGGAGGGACTGGCCCTGGCCGCCGCCAACGGCATCATCCCCCCGCGGCCAAACTACGAGGTCTTTACCTCTGTCAACAGCGAGAGTAACTCAGAGTCAAGTATCCAGAAGTATGAGCTGTTTTCTAAGAGCCAGCTGTCCGGATCCGCCAGCTCTCAGCAGTCTGCTATGGGGAAACCGGCGTCTACCGAAAATGACTCGGCCCCGGGCATGTCGTCCCCAGACGGCCGACATGGAGGCTCGGGTTCAGAGAACGGAGACAGCGAGTCTTTCATCAACTCGCCGGTCTCCAAGCCTTTAAAAGACGGAGGGGAAACTCCTGGCTCCGTCAGCTCCATTGCCTCTGATTCCGGCTCTGAGACCGACAAAGACGAGCAGGagccgtccccttcctctgcgGCCTCCCGGCACATGAACGCCATCGACATCCTGACCCGAGTGTTCCCCAGCCACAAGCGGAGCGTCCTGGAGCTCGTCCTGCAAGGCTGCGGTAAGGACGTGGTGCAGGCCATCGAGCAGATCCTCAACAACAGCGGCGCACAGAGCTCCAACAAGGCCGGGACAGCTGAGACGTGGACGGCCGAGCGGGTGCTCCAAAACGCACAGCAGCCTCCGCCGTCCTCCGCATCCACAACCGCCCCGACGAGGCCCATGTTACCCGGAGCCATGACGCTCAGTAACCGCTCTGCATTTTCTCCTCTCCAGCCAAACTCCCCGCACTTCGGCGCCGACCCCAGCACCTATCCTTTGGGCACCCACCTGGGACTGAACCCTCTGCGGCTGGCCTACTCTGCGCACAGCCGGGGACTGGCTTTCATGACGCCCTACTCCACCACCGGGTTGATGCCCACCCTGGGCTTCAGACCCCCGATAGACTATGCCTTTAGTGACCTGATAAGGGACAGGACAATGTTACACAAGGAGCAAGGCTATGCCAGCGGCCTGTACGGGCCCTTGGTCAACAACACGCCAGAAAAACAGTGAGGCTGGTGGACTGACCACAGAGACACATTACATTGTATTTGTAGCCACAAGTGTTGAATGTTCTGGCGAAATTCTGTGATGTGTTTTGACTACAGGCTGCTGTACATAATAGGATTATCTGGCTTGTAGTCAAATGGTCtgagataaataataataaaaaaaaaaaactaaactcacTTATGtgtaattttcaaaaataattttatatGTTTGACTAAGAAAGTTTGGATGACATTCCCCAGGTATGAAGTtgatcaataaaataaaagtgaagctgaaaagatatttatagatTCCAAAATAAATCACAACGAAGCTGggaaagtaaaaaagtaaaccCAGCAGAGTTATGACCTGTTTAAAGCCCATCACATTTCTCAGCTGGTTGGTGAAACTGAAGTGCATATGATGTTTAAAATCAaactttaaatatgcatttctctcacacactcgGGATATTAATTGAGTCAAAATTAAGTTATTATAACATGTAGATGACGGATATTAACCCTATTTCCTGATGTACAAGTTGAACTAATGATGTGTAAATGCCAcccctttttttcttgtcttatTTCACTTATCTCGTCTATTTGTTTAGTTAATTTCCAACTGCCTGTATTAAATATTGCATTTGGTAATATACTATATTTGACTTTCATTTATCCGCTAGTCagctcaatttttttttgtgacaaagTGCTGGATCAAGTCAGTTCATCTTCAAATGTTAAGCTGTGCTGTCACATTGTATGAATATGCtggaaataaatgttattttaacgaAA

Function

symbol description
dmrta2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within corticotropin hormone secreting cell differentiation and telencephalon development. Predicted to be active in nucleus. Is expressed in central nervous system; ectoderm; endocrine system; and neural keel. Orthologous to human DMRTA2 (DMRT like family A2).

NR:

description
PREDICTED: doublesex- and mab-3-related transcription factor A2 isoform X2

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K19491 DMRT4_5, DMRTA; doublesex- and mab-3-related transcription factor 4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039810236.1 True 2595 mRNA 0.51 2 22775008 22778191

Neighbor

gene id symbol gene type direction distance location
faf1 faf1,LOC102783815 coding upstream 10920 22698080 ~ 22764088 (+)
ttc39a ttc39a coding upstream 117982 22625085 ~ 22657026 (+)
eps15 LOC103370402 coding upstream 151473 22591643 ~ 22623535 (+)
calr LOC102308154,LOC102192544,LOC101484884,LOC100701980,LOC107393148,LOC108230540 coding upstream 185689 22584206 ~ 22589319 (+)
tor3a tor3a coding upstream 192353 22577197 ~ 22582655 (+)
agbl4 agbl4 coding downstream 38360 22816551 ~ 23246315 (+)
bend5 bend5,LOC102785035 coding downstream 398316 23176507 ~ 23191077 (+)
ccl44 LOC103365223,LOC103463524,LOC102231954,LOC103138454,LOC103397632 coding downstream 553587 23331778 ~ 23335697 (+)
si:ch1073-396h14.1 LOC103365213 coding downstream 641753 23419944 ~ 23454783 (+)
fam32a fam32a,LOC103365210 coding downstream 807610 23585801 ~ 23588140 (+)
G97410 NA non-coding upstream 179731 22594496 ~ 22595277 (+)
G97338 NA non-coding upstream 452153 22322492 ~ 22322855 (+)
G97335 NA non-coding upstream 458650 22313648 ~ 22316358 (+)
G97297 NA non-coding upstream 600615 22158057 ~ 22174393 (+)
G97295 NA non-coding upstream 617050 22156111 ~ 22157958 (+)
LOC120565733 NA non-coding downstream 2416 22780607 ~ 22800145 (+)
G97485 elavl4,LOC107657884 non-coding downstream 87636 22865827 ~ 22870448 (+)
G97489 NA non-coding downstream 136325 22914516 ~ 22918731 (+)
G97537 NA non-coding downstream 545781 23323972 ~ 23324176 (+)
G97538 NA non-coding downstream 546068 23324259 ~ 23324499 (+)
rnf11b rnf11 other upstream 98830 22657480 ~ 22676178 (+)
LOC120566217 NA other upstream 198806 22576129 ~ 22576202 (+)
LOC120566220 NA other upstream 199860 22575067 ~ 22575148 (+)
LOC120566221 NA other upstream 200084 22574843 ~ 22574924 (+)
LOC120566225 NA other upstream 200336 22574591 ~ 22574672 (+)
spata6 spata6 other downstream 470938 23249129 ~ 23282671 (+)
LOC120565086 NA other downstream 522615 23300806 ~ 23303691 (+)
pole4 NA other downstream 543273 23321464 ~ 23323484 (+)
LOC120565078 LOC104955513,LOC104923635,LOC103365215,LOC100690174 other downstream 600540 23378731 ~ 23380375 (+)
G97596 lpl,LOC108280930,LOC105906969 other downstream 696591 23474782 ~ 23477818 (+)

Expression


Co-expression Network